Wall clock time and date at job start Fri Mar 27 2020 00:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38261 * 119.99583 * 2 1 4 4 C 1.38211 * 119.99714 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99893 * 359.75024 * 4 3 2 6 6 C 1.38212 * 120.00492 * 0.50691 * 5 4 3 7 7 C 1.50695 * 120.00659 * 179.76834 * 6 5 4 8 8 O 1.42902 * 109.47057 * 29.72233 * 7 6 5 9 9 Si 1.86296 * 109.47266 * 149.72332 * 7 6 5 10 10 H 1.48503 * 109.47117 * 179.97438 * 9 7 6 11 11 H 1.48497 * 109.47274 * 300.00147 * 9 7 6 12 12 H 1.48497 * 109.47035 * 60.00296 * 9 7 6 13 13 C 1.50697 * 109.47133 * 269.72498 * 7 6 5 14 14 O 1.21284 * 120.00102 * 124.99715 * 13 7 6 15 15 N 1.34778 * 119.99766 * 304.99995 * 13 7 6 16 16 C 1.46507 * 119.99784 * 179.97438 * 15 13 7 17 17 C 1.50692 * 109.47145 * 179.97438 * 16 15 13 18 18 C 1.38241 * 120.00184 * 89.99897 * 17 16 15 19 19 C 1.38231 * 120.00264 * 180.02562 * 18 17 16 20 20 C 1.38237 * 119.99963 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00011 * 179.97438 * 20 19 18 22 22 C 1.47206 * 109.46910 * 90.00171 * 21 20 19 23 23 N 9.59032 * 82.80949 * 254.47904 * 12 1 2 24 24 C 1.38236 * 119.99837 * 0.25880 * 20 19 18 25 25 C 1.38235 * 119.99920 * 270.02571 * 17 16 15 26 26 C 1.38209 * 120.00035 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.46782 * 270.01838 * 1 2 3 28 28 H 1.08992 * 109.47060 * 30.02298 * 1 2 3 29 29 H 1.09001 * 109.46699 * 150.01916 * 1 2 3 30 30 H 1.07998 * 120.00122 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.99709 * 180.02562 * 4 3 2 32 32 H 1.08006 * 119.99840 * 180.27604 * 5 4 3 33 33 H 0.96996 * 120.00575 * 359.97438 * 15 13 7 34 34 H 1.09001 * 109.46714 * 60.00043 * 16 15 13 35 35 H 1.09000 * 109.47291 * 299.99785 * 16 15 13 36 36 H 1.08004 * 119.99568 * 0.02562 * 18 17 16 37 37 H 1.07997 * 119.99953 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47258 * 329.99919 * 21 20 19 39 39 H 1.09000 * 109.47247 * 210.00079 * 21 20 19 40 40 H 1.07999 * 119.99872 * 179.72857 * 24 20 19 41 41 H 1.07993 * 120.00529 * 359.97438 * 25 17 16 42 42 H 1.07994 * 120.00020 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0063 6 6 3.5808 -1.1969 0.0009 7 6 4.3342 -2.5019 0.0019 8 8 5.5826 -2.3307 0.6759 9 14 3.3271 -3.7998 0.8805 10 1 4.0694 -5.0860 0.8809 11 1 3.0791 -3.3704 2.2802 12 1 2.0299 -3.9778 0.1800 13 6 4.5860 -2.9377 -1.4185 14 8 5.7163 -3.1746 -1.7889 15 7 3.5549 -3.0641 -2.2773 16 6 3.7997 -3.4873 -3.6585 17 6 2.4916 -3.5499 -4.4039 18 6 2.0232 -2.4346 -5.0731 19 6 0.8230 -2.4919 -5.7565 20 6 0.0914 -3.6647 -5.7713 21 6 -1.2173 -3.7270 -6.5158 22 6 -0.9724 -4.1515 -7.9039 23 7 -0.7836 -4.4791 -8.9746 24 6 0.5574 -4.7786 -5.0982 25 6 1.7597 -4.7225 -4.4183 26 6 2.1981 -1.1969 0.0005 27 1 -0.3633 0.0003 1.0276 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5136 30 1 1.6583 2.1327 0.0004 31 1 4.1203 2.1328 0.0010 32 1 5.3517 0.0002 0.0112 33 1 2.6509 -2.8750 -1.9811 34 1 4.2656 -4.4727 -3.6593 35 1 4.4621 -2.7717 -4.1457 36 1 2.5951 -1.5184 -5.0618 37 1 0.4569 -1.6204 -6.2788 38 1 -1.6836 -2.7418 -6.5141 39 1 -1.8790 -4.4430 -6.0283 40 1 -0.0163 -5.6935 -5.1061 41 1 2.1256 -5.5939 -3.8956 42 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586010341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 00:22:13 Heat of formation + Delta-G solvation = -26.672071 kcal Electronic energy + Delta-G solvation = -26208.505400 eV Core-core repulsion = 22504.137387 eV Total energy + Delta-G solvation = -3704.368013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.82739 -38.89990 -37.85137 -36.89389 -34.56571 -32.95078 -32.41940 -31.40694 -31.07070 -29.06751 -28.86929 -26.17541 -25.51207 -23.47914 -22.87727 -21.46258 -21.00078 -20.40441 -18.62430 -18.04040 -16.51249 -15.98656 -15.93974 -15.54603 -15.19278 -14.89365 -14.77050 -14.35173 -14.21200 -13.85046 -13.67708 -13.43172 -13.35177 -13.24838 -13.10831 -12.65858 -12.53378 -12.35026 -12.24676 -12.07777 -11.94146 -11.87386 -11.58913 -11.19846 -11.11962 -11.06331 -10.52536 -10.36479 -10.25955 -9.84798 -9.53781 -9.05997 -9.03699 -8.66451 -8.17201 -7.99517 -7.63023 -5.98821 -5.46710 1.03156 1.29635 2.15203 2.22439 2.49620 2.50142 3.19722 3.31949 3.40369 3.43349 3.91060 3.91428 4.33935 4.44681 4.53575 4.58856 4.75125 4.84664 4.88754 4.95284 5.12181 5.36525 5.40084 5.44710 5.45861 5.72321 5.74888 5.75602 5.81973 5.90024 6.01191 6.05251 6.12697 6.18845 6.24776 6.32463 6.40906 6.51339 6.61755 6.79625 6.83348 6.89282 6.94076 7.27195 7.27341 7.34007 7.40051 7.73085 7.92561 8.52458 9.42974 9.97098 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.003888 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.915988 B = 7199.046737 C = 8165.303758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.128 4.128 5 C -0.087 4.087 6 C -0.053 4.053 7 C 0.025 3.975 8 O -0.810 6.810 9 Si 0.931 3.069 10 H -0.279 1.279 11 H -0.270 1.270 12 H -0.295 1.295 13 C 0.491 3.509 14 O -0.535 6.535 15 N -0.744 5.744 16 C 0.153 3.847 17 C -0.085 4.085 18 C -0.099 4.099 19 C -0.106 4.106 20 C -0.099 4.099 21 C 0.019 3.981 22 C 0.210 3.790 23 N -0.437 5.437 24 C -0.107 4.107 25 C -0.103 4.103 26 C -0.156 4.156 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.393 0.607 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.829 1.564 -8.894 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.096 4.096 3 C -0.165 4.165 4 C -0.146 4.146 5 C -0.105 4.105 6 C -0.054 4.054 7 C -0.079 4.079 8 O -0.754 6.754 9 Si 0.759 3.241 10 H -0.204 1.204 11 H -0.195 1.195 12 H -0.224 1.224 13 C 0.281 3.719 14 O -0.410 6.410 15 N -0.403 5.403 16 C 0.029 3.971 17 C -0.085 4.085 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.101 4.101 21 C -0.021 4.021 22 C -0.107 4.107 23 N -0.113 5.113 24 C -0.125 4.125 25 C -0.121 4.121 26 C -0.174 4.174 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.145 0.855 33 H 0.227 0.773 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.851 0.332 -10.165 18.833 hybrid contribution -0.397 0.424 0.396 0.703 sum -16.249 0.756 -9.769 18.974 Atomic orbital electron populations 1.20710 0.92237 1.01874 1.01567 1.19683 0.95061 0.93331 1.01494 1.20732 0.94198 0.96576 1.04946 1.21126 0.94143 0.97772 1.01565 1.21101 1.01099 0.90997 0.97258 1.21442 0.92417 0.98899 0.92640 1.22575 1.02018 0.93823 0.89452 1.95082 1.22358 1.89409 1.68506 0.86585 0.74054 0.81159 0.82319 1.20438 1.19470 1.22433 1.23846 0.84045 0.75011 0.88981 1.90455 1.23147 1.49284 1.78066 1.46732 1.11299 1.72571 1.09717 1.20114 0.92406 1.00952 0.83617 1.20177 0.96829 0.93861 0.97673 1.21144 0.95920 0.98263 0.96463 1.21019 0.94848 0.97298 0.99271 1.19373 0.95833 0.94836 1.00049 1.18161 0.96454 1.04568 0.82935 1.29075 0.93430 0.93484 0.94754 1.81216 1.08269 1.09085 1.12761 1.21016 0.96345 0.97709 0.97452 1.21147 0.94435 0.97947 0.98593 1.21108 0.94499 0.97190 1.04583 0.91941 0.92271 0.92040 0.87460 0.87228 0.85463 0.77271 0.91414 0.91382 0.85435 0.85685 0.86367 0.86386 0.85691 0.85459 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 36.01 0.36 -1.00 16 2 C -0.10 -1.64 5.88 -104.62 -0.62 -2.26 16 3 C -0.15 -2.48 9.70 -39.58 -0.38 -2.87 16 4 C -0.13 -2.43 10.05 -39.59 -0.40 -2.83 16 5 C -0.09 -2.04 9.35 -39.59 -0.37 -2.41 16 6 C -0.05 -1.27 4.39 -104.62 -0.46 -1.73 16 7 C 0.03 0.70 0.70 -29.04 -0.02 0.68 16 8 O -0.81 -28.22 16.18 -55.09 -0.89 -29.11 16 9 Si 0.93 22.73 24.29 -169.99 -4.13 18.60 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -5.92 6.38 56.52 0.36 -5.56 16 13 C 0.49 12.92 5.95 -10.99 -0.07 12.86 16 14 O -0.53 -16.16 16.51 -14.31 -0.24 -16.39 16 15 N -0.74 -15.01 5.09 -61.47 -0.31 -15.32 16 16 C 0.15 2.56 5.80 -5.19 -0.03 2.53 16 17 C -0.08 -1.11 5.25 -104.63 -0.55 -1.66 16 18 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 19 C -0.11 -0.97 9.70 -39.58 -0.38 -1.35 16 20 C -0.10 -0.80 5.09 -104.62 -0.53 -1.34 16 21 C 0.02 0.09 5.83 -30.67 -0.18 -0.09 16 22 C 0.21 1.83 15.41 -20.77 -0.32 1.51 16 23 N -0.44 -5.32 18.53 42.13 0.78 -4.54 16 24 C -0.11 -0.97 9.70 -39.58 -0.38 -1.35 16 25 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 26 C -0.16 -3.12 7.30 -39.58 -0.29 -3.41 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.13 3.32 7.48 -52.48 -0.39 2.92 16 33 H 0.39 7.20 6.71 -40.82 -0.27 6.92 16 34 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 36 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.30 8.09 -51.93 -0.42 -0.12 16 39 H 0.12 0.30 8.08 -51.93 -0.42 -0.12 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.12 2.15 5.26 -52.49 -0.28 1.88 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -38.67 365.16 -9.93 -48.60 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.26 Total: 0.45 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -5.39 Total: -7.80 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.47 Total: -19.86 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -1.13 Total: -45.50 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.13 Total: 18.60 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.67 -9.93 -48.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586010341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.930 kcal (2) G-P(sol) polarization free energy of solvation -38.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds