Wall clock time and date at job start Thu Mar 26 2020 18:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 120.00370 * 2 1 4 4 C 1.38209 * 119.99907 * 179.97438 * 3 2 1 5 5 C 1.38264 * 120.00326 * 359.74651 * 4 3 2 6 6 C 1.38218 * 119.99417 * 0.50874 * 5 4 3 7 7 C 1.50700 * 119.99504 * 179.76536 * 6 5 4 8 8 O 1.42901 * 109.47057 * 29.72608 * 7 6 5 9 9 Si 1.86301 * 109.46745 * 149.72315 * 7 6 5 10 10 H 1.48504 * 109.46917 * 180.02562 * 9 7 6 11 11 H 1.48497 * 109.47509 * 300.00067 * 9 7 6 12 12 H 1.48499 * 109.46976 * 60.00308 * 9 7 6 13 13 C 1.50694 * 109.47328 * 269.72288 * 7 6 5 14 14 O 1.21278 * 120.00017 * 124.99836 * 13 7 6 15 15 N 1.34776 * 119.99929 * 305.00360 * 13 7 6 16 16 C 1.39596 * 119.99890 * 184.22160 * 15 13 7 17 17 C 1.39083 * 119.92381 * 325.22592 * 16 15 13 18 18 C 1.37700 * 120.09225 * 179.75986 * 17 16 15 19 19 C 1.39778 * 119.93945 * 0.53740 * 18 17 16 20 20 C 1.43205 * 120.07162 * 179.69685 * 19 18 17 21 21 N 9.54587 * 104.08251 * 246.69004 * 6 1 2 22 22 C 1.39749 * 119.85373 * 359.72365 * 19 18 17 23 23 C 1.37823 * 119.90257 * 359.97438 * 22 19 18 24 24 Cl 1.73596 * 119.96944 * 180.02562 * 23 22 19 25 25 C 1.38219 * 119.99732 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46809 * 270.02367 * 1 2 3 27 27 H 1.08998 * 109.46822 * 30.02002 * 1 2 3 28 28 H 1.08997 * 109.47346 * 150.01847 * 1 2 3 29 29 H 1.07994 * 120.00130 * 0.02562 * 3 2 1 30 30 H 1.08006 * 119.99772 * 180.02562 * 4 3 2 31 31 H 1.08000 * 120.00137 * 180.27433 * 5 4 3 32 32 H 0.97000 * 120.00023 * 4.49947 * 15 13 7 33 33 H 1.08007 * 119.95453 * 0.02705 * 17 16 15 34 34 H 1.08003 * 120.02519 * 180.25852 * 18 17 16 35 35 H 1.07999 * 120.05392 * 180.02562 * 22 19 18 36 36 H 1.08005 * 119.99754 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0064 6 6 3.5805 -1.1971 0.0010 7 6 4.3340 -2.5022 0.0020 8 8 5.5824 -2.3310 0.6761 9 14 3.3268 -3.8000 0.8807 10 1 4.0695 -5.0860 0.8823 11 1 3.0787 -3.3706 2.2804 12 1 2.0295 -3.9779 0.1802 13 6 4.5857 -2.9381 -1.4184 14 8 5.7159 -3.1751 -1.7887 15 7 3.5547 -3.0645 -2.2772 16 6 3.7759 -3.5524 -3.5662 17 6 4.9590 -3.2466 -4.2303 18 6 5.1830 -3.7301 -5.5001 19 6 4.2148 -4.5201 -6.1265 20 6 4.4420 -5.0190 -7.4495 21 7 4.6216 -5.4157 -8.4986 22 6 3.0245 -4.8214 -5.4592 23 6 2.8096 -4.3393 -4.1860 24 17 1.3319 -4.7132 -3.3552 25 6 2.1980 -1.1970 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6585 2.1326 0.0004 30 1 4.1205 2.1325 0.0010 31 1 5.3517 -0.0002 0.0113 32 1 2.6596 -2.8127 -2.0009 33 1 5.7051 -2.6325 -3.7478 34 1 6.1039 -3.4953 -6.0131 35 1 2.2745 -5.4319 -5.9400 36 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001457795092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 18:14:14 Heat of formation + Delta-G solvation = -20.558538 kcal Electronic energy + Delta-G solvation = -24826.173990 eV Core-core repulsion = 21073.346525 eV Total energy + Delta-G solvation = -3752.827465 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.26993 -38.89589 -38.03502 -36.75477 -36.13033 -34.17529 -33.11791 -31.61308 -30.93724 -29.81412 -29.22509 -26.27050 -25.16010 -23.19824 -22.87270 -21.50411 -20.71835 -19.10081 -18.85141 -17.41225 -16.41229 -15.71270 -15.50026 -15.14047 -14.86430 -14.43454 -14.18715 -14.03960 -13.89959 -13.57800 -13.42419 -13.32989 -13.01606 -12.87953 -12.81242 -12.49384 -12.32649 -12.05355 -11.95193 -11.57547 -11.39547 -11.32282 -10.99869 -10.67768 -10.48589 -10.39879 -10.10334 -9.97956 -9.67098 -9.17648 -8.87334 -8.13236 -7.93785 -7.78233 -6.22110 -5.70053 0.68941 1.14809 2.01547 2.03514 2.09558 2.65374 2.80872 3.08755 3.15865 3.28757 3.57820 3.62271 3.82988 3.88904 4.29447 4.53515 4.71244 4.91947 5.20520 5.31867 5.34374 5.36651 5.62511 5.67193 5.74128 5.84438 5.86603 6.02528 6.10045 6.12211 6.18536 6.28762 6.33587 6.48674 6.54653 6.75093 6.80826 7.06952 7.16157 7.25901 7.42861 7.57524 7.78482 7.95507 8.95822 9.67269 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.004448 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.531625 B = 6293.798971 C = 6607.897937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.126 4.126 5 C -0.085 4.085 6 C -0.061 4.061 7 C 0.027 3.973 8 O -0.801 6.801 9 Si 0.927 3.073 10 H -0.274 1.274 11 H -0.264 1.264 12 H -0.289 1.289 13 C 0.490 3.510 14 O -0.504 6.504 15 N -0.683 5.683 16 C 0.214 3.786 17 C -0.122 4.122 18 C -0.040 4.040 19 C -0.063 4.063 20 C 0.268 3.732 21 N -0.431 5.431 22 C -0.038 4.038 23 C -0.087 4.087 24 Cl -0.059 7.059 25 C -0.159 4.159 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.410 0.590 33 H 0.162 0.838 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.167 1.903 -6.651 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.161 4.161 4 C -0.144 4.144 5 C -0.103 4.103 6 C -0.062 4.062 7 C -0.076 4.076 8 O -0.744 6.744 9 Si 0.754 3.246 10 H -0.200 1.200 11 H -0.189 1.189 12 H -0.218 1.218 13 C 0.282 3.718 14 O -0.376 6.376 15 N -0.332 5.332 16 C 0.113 3.887 17 C -0.143 4.143 18 C -0.062 4.062 19 C -0.068 4.068 20 C -0.047 4.047 21 N -0.107 5.107 22 C -0.060 4.060 23 C -0.116 4.116 24 Cl -0.030 7.030 25 C -0.176 4.176 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.147 0.853 32 H 0.248 0.752 33 H 0.179 0.821 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.336 0.552 -7.700 12.114 hybrid contribution -0.626 0.385 0.510 0.895 sum -9.962 0.937 -7.189 12.321 Atomic orbital electron populations 1.20732 0.92078 1.02056 1.01725 1.19706 0.95202 0.93272 1.01185 1.20781 0.94242 0.96686 1.04354 1.21153 0.94141 0.97852 1.01301 1.21106 1.01142 0.90918 0.97097 1.21369 0.92438 0.98687 0.93753 1.22624 1.02470 0.94256 0.88295 1.95116 1.22028 1.89514 1.67724 0.86576 0.74474 0.80845 0.82717 1.19959 1.18874 1.21793 1.24638 0.83740 0.74392 0.89063 1.90455 1.22645 1.46966 1.77497 1.44852 1.14330 1.64215 1.09816 1.18116 0.93480 0.91094 0.86021 1.21381 0.97812 1.01780 0.93325 1.21152 0.97559 0.93480 0.93977 1.15702 0.96993 1.05665 0.88405 1.25543 0.93482 0.93126 0.92504 1.81229 1.08016 1.09670 1.11790 1.20701 0.95916 0.97452 0.91906 1.20530 0.91284 1.04355 0.95478 1.98369 1.33054 1.93380 1.78246 1.21148 0.94468 0.97400 1.04630 0.91784 0.92124 0.91941 0.87249 0.87016 0.85270 0.75192 0.82092 0.84320 0.84052 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 36.00 0.36 -0.98 16 2 C -0.09 -1.53 5.88 -104.62 -0.62 -2.15 16 3 C -0.14 -2.29 9.70 -39.58 -0.38 -2.67 16 4 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 5 C -0.08 -1.86 9.35 -39.58 -0.37 -2.23 16 6 C -0.06 -1.39 4.37 -104.62 -0.46 -1.85 16 7 C 0.03 0.72 0.70 -29.04 -0.02 0.70 16 8 O -0.80 -26.22 16.18 -55.09 -0.89 -27.11 16 9 Si 0.93 21.67 24.37 -169.99 -4.14 17.53 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.29 -5.57 6.38 56.52 0.36 -5.21 16 13 C 0.49 11.81 5.78 -10.99 -0.06 11.75 16 14 O -0.50 -13.46 13.91 -14.30 -0.20 -13.66 16 15 N -0.68 -13.10 4.55 -9.82 -0.04 -13.15 16 16 C 0.21 3.54 6.30 -83.66 -0.53 3.02 16 17 C -0.12 -1.92 8.67 -39.46 -0.34 -2.27 16 18 C -0.04 -0.50 9.75 -39.20 -0.38 -0.89 16 19 C -0.06 -0.75 5.74 -106.83 -0.61 -1.36 16 20 C 0.27 3.38 15.33 -22.47 -0.34 3.04 16 21 N -0.43 -6.21 18.54 41.83 0.78 -5.44 16 22 C -0.04 -0.44 9.52 -39.17 -0.37 -0.82 16 23 C -0.09 -1.20 6.33 -39.38 -0.25 -1.45 16 24 Cl -0.06 -0.78 27.93 -51.86 -1.45 -2.23 16 25 C -0.16 -3.02 7.23 -39.58 -0.29 -3.30 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 28 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.13 3.12 7.48 -52.49 -0.39 2.73 16 32 H 0.41 7.19 6.32 -40.82 -0.26 6.94 16 33 H 0.16 2.88 6.19 -52.48 -0.32 2.55 16 34 H 0.14 1.41 8.06 -52.48 -0.42 0.98 16 35 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.12 2.07 5.28 -52.48 -0.28 1.79 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -32.57 332.60 -9.05 -41.61 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -3.04 Total: 1.55 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -5.07 Total: -4.12 kcal Atomic # 7 Polarization: -19.31 SS G_CDS: 0.73 Total: -18.58 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -1.09 Total: -40.77 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.53 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.45 Total: -2.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.57 -9.05 -41.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457795092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.055 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds