Wall clock time and date at job start Thu Mar 26 2020 18:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 120.00370 * 2 1 4 4 C 1.38209 * 119.99907 * 179.97438 * 3 2 1 5 5 C 1.38264 * 120.00326 * 359.74651 * 4 3 2 6 6 C 1.38218 * 119.99417 * 0.50874 * 5 4 3 7 7 C 1.50700 * 119.99504 * 179.76536 * 6 5 4 8 8 O 1.42901 * 109.47057 * 29.72608 * 7 6 5 9 9 Si 1.86301 * 109.46745 * 149.72315 * 7 6 5 10 10 H 1.48504 * 109.46917 * 180.02562 * 9 7 6 11 11 H 1.48497 * 109.47509 * 300.00067 * 9 7 6 12 12 H 1.48499 * 109.46976 * 60.00308 * 9 7 6 13 13 C 1.50694 * 109.47328 * 269.72288 * 7 6 5 14 14 O 1.21278 * 120.00017 * 124.99836 * 13 7 6 15 15 N 1.34776 * 119.99929 * 305.00360 * 13 7 6 16 16 C 1.39596 * 119.99890 * 184.22160 * 15 13 7 17 17 C 1.39083 * 119.92381 * 325.22592 * 16 15 13 18 18 C 1.37700 * 120.09225 * 179.75986 * 17 16 15 19 19 C 1.39778 * 119.93945 * 0.53740 * 18 17 16 20 20 C 1.43205 * 120.07162 * 179.69685 * 19 18 17 21 21 N 9.54587 * 104.08251 * 246.69004 * 6 1 2 22 22 C 1.39749 * 119.85373 * 359.72365 * 19 18 17 23 23 C 1.37823 * 119.90257 * 359.97438 * 22 19 18 24 24 Cl 1.73596 * 119.96944 * 180.02562 * 23 22 19 25 25 C 1.38219 * 119.99732 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46809 * 270.02367 * 1 2 3 27 27 H 1.08998 * 109.46822 * 30.02002 * 1 2 3 28 28 H 1.08997 * 109.47346 * 150.01847 * 1 2 3 29 29 H 1.07994 * 120.00130 * 0.02562 * 3 2 1 30 30 H 1.08006 * 119.99772 * 180.02562 * 4 3 2 31 31 H 1.08000 * 120.00137 * 180.27433 * 5 4 3 32 32 H 0.97000 * 120.00023 * 4.49947 * 15 13 7 33 33 H 1.08007 * 119.95453 * 0.02705 * 17 16 15 34 34 H 1.08003 * 120.02519 * 180.25852 * 18 17 16 35 35 H 1.07999 * 120.05392 * 180.02562 * 22 19 18 36 36 H 1.08005 * 119.99754 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0064 6 6 3.5805 -1.1971 0.0010 7 6 4.3340 -2.5022 0.0020 8 8 5.5824 -2.3310 0.6761 9 14 3.3268 -3.8000 0.8807 10 1 4.0695 -5.0860 0.8823 11 1 3.0787 -3.3706 2.2804 12 1 2.0295 -3.9779 0.1802 13 6 4.5857 -2.9381 -1.4184 14 8 5.7159 -3.1751 -1.7887 15 7 3.5547 -3.0645 -2.2772 16 6 3.7759 -3.5524 -3.5662 17 6 4.9590 -3.2466 -4.2303 18 6 5.1830 -3.7301 -5.5001 19 6 4.2148 -4.5201 -6.1265 20 6 4.4420 -5.0190 -7.4495 21 7 4.6216 -5.4157 -8.4986 22 6 3.0245 -4.8214 -5.4592 23 6 2.8096 -4.3393 -4.1860 24 17 1.3319 -4.7132 -3.3552 25 6 2.1980 -1.1970 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6585 2.1326 0.0004 30 1 4.1205 2.1325 0.0010 31 1 5.3517 -0.0002 0.0113 32 1 2.6596 -2.8127 -2.0009 33 1 5.7051 -2.6325 -3.7478 34 1 6.1039 -3.4953 -6.0131 35 1 2.2745 -5.4319 -5.9400 36 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001457795092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 18:14:14 Heat of formation + Delta-G solvation = -41.242004 kcal Electronic energy + Delta-G solvation = -24827.070892 eV Core-core repulsion = 21073.346525 eV Total energy + Delta-G solvation = -3753.724367 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71005 -40.29152 -39.51724 -37.88206 -37.27036 -35.72180 -34.72293 -33.01657 -32.05504 -31.24626 -30.92533 -27.48539 -26.82996 -24.54621 -24.07033 -22.93562 -22.22950 -20.50332 -20.15878 -18.81437 -17.97029 -17.21560 -16.95641 -16.46846 -16.11951 -15.83719 -15.57798 -15.38860 -15.16918 -14.91903 -14.76168 -14.61238 -14.33482 -14.19534 -13.98935 -13.91956 -13.63594 -13.52217 -13.00262 -12.76327 -12.65281 -12.52016 -12.33711 -12.26226 -12.07990 -12.01914 -11.75336 -11.50485 -11.36969 -10.92621 -10.00867 -9.60025 -9.34042 -9.24083 -8.43070 -7.85974 -0.46968 0.06170 0.55260 0.62578 0.92251 1.17667 1.25961 1.38853 1.59713 1.61484 1.92409 2.13529 2.47911 2.71946 2.77650 3.03998 3.62298 3.89078 3.98113 4.07771 4.15139 4.21923 4.29171 4.47881 4.52173 4.63639 4.67747 4.80424 4.84338 4.96798 4.99566 5.05442 5.06750 5.11632 5.28933 5.32139 5.45517 5.67280 5.72132 5.79200 6.03488 6.30818 6.36135 6.38744 7.19163 7.73857 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.004448 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.531625 B = 6293.798971 C = 6607.897937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.082 4.082 3 C -0.133 4.133 4 C -0.119 4.119 5 C -0.127 4.127 6 C -0.086 4.086 7 C -0.019 4.019 8 O -0.889 6.889 9 Si 0.949 3.051 10 H -0.302 1.302 11 H -0.272 1.272 12 H -0.214 1.214 13 C 0.493 3.507 14 O -0.550 6.550 15 N -0.672 5.672 16 C 0.182 3.818 17 C -0.138 4.138 18 C -0.026 4.026 19 C -0.044 4.044 20 C 0.290 3.710 21 N -0.453 5.453 22 C -0.020 4.020 23 C -0.080 4.080 24 Cl -0.047 7.047 25 C -0.165 4.165 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.137 0.863 31 H 0.082 0.918 32 H 0.418 0.582 33 H 0.130 0.870 34 H 0.163 0.837 35 H 0.176 0.824 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.984 2.153 -8.640 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.082 4.082 3 C -0.151 4.151 4 C -0.137 4.137 5 C -0.145 4.145 6 C -0.087 4.087 7 C -0.120 4.120 8 O -0.834 6.834 9 Si 0.773 3.227 10 H -0.229 1.229 11 H -0.197 1.197 12 H -0.138 1.138 13 C 0.285 3.715 14 O -0.426 6.426 15 N -0.321 5.321 16 C 0.084 3.916 17 C -0.159 4.159 18 C -0.047 4.047 19 C -0.049 4.049 20 C -0.024 4.024 21 N -0.129 5.129 22 C -0.042 4.042 23 C -0.110 4.110 24 Cl -0.018 7.018 25 C -0.183 4.183 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.172 0.828 30 H 0.154 0.846 31 H 0.100 0.900 32 H 0.257 0.743 33 H 0.148 0.852 34 H 0.180 0.820 35 H 0.194 0.806 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.243 0.806 -9.756 17.283 hybrid contribution 0.836 0.359 0.997 1.349 sum -13.407 1.165 -8.759 16.057 Atomic orbital electron populations 1.20849 0.88214 1.04120 1.03310 1.20248 0.97826 0.92079 0.98016 1.21279 0.93208 0.98631 1.01945 1.21383 0.95505 0.96959 0.99877 1.20940 0.99273 0.93242 1.01045 1.21029 0.94123 0.96922 0.96597 1.23343 1.01425 0.97823 0.89365 1.95012 1.26342 1.91582 1.70510 0.86226 0.76852 0.77543 0.82102 1.22919 1.19653 1.13846 1.24019 0.83997 0.74099 0.89384 1.90416 1.24473 1.49382 1.78338 1.44205 1.13205 1.64177 1.10515 1.18270 0.95033 0.93177 0.85159 1.21174 0.97360 1.02640 0.94700 1.21275 0.98546 0.92375 0.92527 1.15645 0.96767 1.04556 0.87965 1.25309 0.92702 0.92393 0.92026 1.81280 1.08753 1.10389 1.12515 1.21008 0.96160 0.96291 0.90698 1.20485 0.90984 1.03564 0.95917 1.98372 1.32013 1.93181 1.78263 1.21231 0.92570 0.99467 1.05040 0.90221 0.89528 0.90593 0.82771 0.84555 0.89995 0.74296 0.85236 0.81987 0.80639 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 10.01 71.24 0.71 -1.32 16 2 C -0.08 -2.37 5.88 -19.86 -0.12 -2.49 16 3 C -0.13 -3.80 9.70 22.27 0.22 -3.58 16 4 C -0.12 -4.20 10.05 22.27 0.22 -3.98 16 5 C -0.13 -5.98 9.35 22.27 0.21 -5.77 16 6 C -0.09 -4.05 4.37 -19.87 -0.09 -4.14 16 7 C -0.02 -1.06 0.70 29.10 0.02 -1.04 16 8 O -0.89 -63.90 16.18 -129.99 -2.10 -66.00 16 9 Si 0.95 44.77 24.37 68.60 1.67 46.44 16 10 H -0.30 -15.49 7.11 99.48 0.71 -14.79 16 11 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.21 -7.40 6.38 99.48 0.63 -6.76 16 13 C 0.49 25.34 5.78 87.66 0.51 25.84 16 14 O -0.55 -32.10 13.91 15.97 0.22 -31.88 16 15 N -0.67 -26.18 4.55 -303.38 -1.38 -27.56 16 16 C 0.18 6.01 6.30 38.33 0.24 6.25 16 17 C -0.14 -4.46 8.67 22.35 0.19 -4.27 16 18 C -0.03 -0.62 9.75 22.52 0.22 -0.40 16 19 C -0.04 -0.93 5.74 -21.29 -0.12 -1.05 16 20 C 0.29 6.39 15.33 88.33 1.35 7.74 16 21 N -0.45 -11.83 18.54 19.00 0.35 -11.47 16 22 C -0.02 -0.40 9.52 22.54 0.21 -0.19 16 23 C -0.08 -2.03 6.33 22.40 0.14 -1.88 16 24 Cl -0.05 -1.09 27.93 -2.72 -0.08 -1.17 16 25 C -0.17 -6.03 7.23 22.27 0.16 -5.87 16 26 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16 28 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 29 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 31 H 0.08 4.52 7.48 -2.91 -0.02 4.50 16 32 H 0.42 14.30 6.32 -92.71 -0.59 13.71 16 33 H 0.13 5.09 6.19 -2.91 -0.02 5.07 16 34 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.13 4.25 5.28 -2.91 -0.02 4.23 16 Total: -1.00 -82.00 332.60 4.03 -77.96 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.26 Total: 9.82 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 4.09 Total: 3.85 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: -1.03 Total: -39.03 kcal Atomic # 8 Polarization: -96.00 SS G_CDS: -1.88 Total: -97.88 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.67 Total: 46.44 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -82.00 4.03 -77.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457795092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.722 kcal (2) G-P(sol) polarization free energy of solvation -81.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds