Wall clock time and date at job start Thu Mar 26 2020 21:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47483 * 2 1 4 4 C 1.53000 * 109.47124 * 239.99898 * 2 1 3 5 5 N 1.46505 * 109.47272 * 120.00409 * 2 1 3 6 6 C 1.34944 * 126.04145 * 75.25846 * 5 2 1 7 7 C 1.35312 * 107.74737 * 180.15015 * 6 5 2 8 8 C 1.50704 * 126.04167 * 179.87618 * 7 6 5 9 9 O 1.42900 * 109.46865 * 334.71018 * 8 7 6 10 10 Si 1.86294 * 109.46924 * 214.71292 * 8 7 6 11 11 H 1.48495 * 109.47468 * 59.99980 * 10 8 7 12 12 H 1.48506 * 109.47078 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47312 * 299.99385 * 10 8 7 14 14 C 1.50700 * 109.47070 * 94.70932 * 8 7 6 15 15 O 1.21289 * 119.99912 * 239.99690 * 14 8 7 16 16 N 1.34773 * 120.00294 * 60.00546 * 14 8 7 17 17 C 1.39944 * 120.00486 * 174.73239 * 16 14 8 18 18 C 1.39004 * 120.09250 * 146.90009 * 17 16 14 19 19 C 1.38214 * 120.48822 * 180.09233 * 18 17 16 20 20 C 1.38130 * 120.15147 * 359.91944 * 19 18 17 21 21 C 1.39504 * 119.45038 * 359.94856 * 20 19 18 22 22 C 1.38771 * 120.65068 * 359.89740 * 21 20 19 23 Xx 1.57615 * 118.34121 * 180.29334 * 21 20 19 24 23 O 1.42004 * 122.02603 * 171.37332 * 23 21 20 25 24 O 1.43344 * 115.94165 * 351.35466 * 23 21 20 26 25 C 1.43326 * 111.34349 * 41.24292 * 25 23 21 27 26 C 1.50461 * 120.26260 * 179.76776 * 20 19 18 28 27 C 1.39866 * 107.92004 * 359.60894 * 7 6 5 29 28 N 1.30840 * 108.20598 * 0.24176 * 28 7 6 30 29 H 1.09000 * 109.46904 * 299.99490 * 1 2 3 31 30 H 1.08993 * 109.47534 * 60.00058 * 1 2 3 32 31 H 1.09001 * 109.47198 * 180.02562 * 1 2 3 33 32 H 1.08998 * 109.47834 * 180.02562 * 3 2 1 34 33 H 1.08997 * 109.47152 * 300.00423 * 3 2 1 35 34 H 1.09005 * 109.47064 * 59.99769 * 3 2 1 36 35 H 1.09003 * 109.47417 * 300.00161 * 4 2 1 37 36 H 1.09004 * 109.47073 * 60.00074 * 4 2 1 38 37 H 1.08995 * 109.47445 * 179.97438 * 4 2 1 39 38 H 1.08008 * 126.12606 * 359.97438 * 6 5 2 40 39 H 0.97005 * 119.99565 * 354.73276 * 16 14 8 41 40 H 1.07998 * 119.75603 * 0.10770 * 18 17 16 42 41 H 1.08004 * 119.92556 * 179.89819 * 19 18 17 43 42 H 1.07993 * 120.27887 * 180.11929 * 22 21 20 44 43 H 0.96700 * 113.99749 * 179.97438 * 24 23 21 45 44 H 1.08999 * 109.32378 * 174.09256 * 26 25 23 46 45 H 1.08994 * 109.32424 * 54.61742 * 26 25 23 47 46 H 1.09001 * 109.13392 * 277.44909 * 27 20 19 48 47 H 1.09004 * 109.13402 * 36.62072 * 27 20 19 49 48 H 1.08001 * 125.90199 * 180.27004 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1961 6 6 2.0212 -2.0251 1.3969 7 6 2.5483 -2.2569 2.6214 8 6 2.7422 -3.6071 3.2622 9 8 1.8053 -4.5348 2.7111 10 14 2.4697 -3.4670 5.0998 11 1 1.0881 -2.9892 5.3604 12 1 2.6601 -4.7976 5.7312 13 1 3.4432 -2.5031 5.6725 14 6 4.1443 -4.0920 2.9977 15 8 4.3236 -5.1300 2.3965 16 7 5.1989 -3.3724 3.4293 17 6 6.4966 -3.8752 3.2819 18 6 7.5584 -3.0076 3.0537 19 6 8.8430 -3.4954 2.9049 20 6 9.0829 -4.8534 2.9838 21 6 8.0191 -5.7256 3.2155 22 6 6.7277 -5.2413 3.3688 23 8 7.3396 -8.2078 3.7168 24 8 9.6539 -7.6683 2.9530 25 6 10.6287 -6.7563 3.4748 26 6 10.4796 -5.3876 2.8171 27 6 2.8872 -1.0224 3.1847 28 7 2.5699 -0.0827 2.3313 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2495 38 1 1.6640 -2.7739 0.7053 39 1 5.0585 -2.5060 3.8423 40 1 7.3783 -1.9445 2.9924 41 1 9.6611 -2.8132 2.7263 42 1 5.9089 -5.9217 3.5499 43 1 7.6511 -9.1231 3.7315 44 1 11.6279 -7.1445 3.2774 45 1 10.4893 -6.6564 4.5512 46 1 10.7040 -5.4756 1.7540 47 1 11.1846 -4.6935 3.2746 48 1 3.3340 -0.8708 4.1562 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584912563.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 21:24:21 Heat of formation + Delta-G solvation = 93.155838 kcal Electronic energy + Delta-G solvation = -32619.356252 eV Core-core repulsion = 28149.115376 eV Total energy + Delta-G solvation = -4470.240876 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.164 amu Computer time = 5.64 seconds Orbital eigenvalues (eV) -42.25065 -41.66914 -39.92843 -37.68830 -37.05240 -35.54525 -34.08366 -32.68551 -32.28164 -32.00123 -31.42767 -30.12943 -29.14095 -28.36914 -28.18167 -26.34380 -24.20659 -24.13292 -23.30016 -21.98179 -21.62454 -20.50008 -20.08811 -18.50398 -18.01041 -17.56753 -17.06233 -16.63618 -16.27703 -16.13283 -15.96685 -15.68035 -15.39091 -15.20185 -15.06380 -14.94968 -14.85653 -14.61396 -14.50098 -14.33496 -14.18788 -13.76805 -13.62352 -13.35951 -13.18588 -13.15347 -13.03705 -13.02433 -12.87026 -12.73343 -12.42966 -12.20816 -12.15046 -12.01042 -11.87223 -11.60565 -11.35300 -11.09790 -10.84804 -10.67838 -10.55775 -10.13903 -9.70419 -9.42845 -9.14921 -8.40658 -7.78575 -6.50179 -2.72769 -0.47730 -0.29568 1.04844 1.21654 1.25466 1.45938 1.66076 1.73769 1.87650 2.18916 2.24086 2.60746 2.99270 3.25347 3.45525 3.53269 3.65567 3.81638 3.82684 3.93632 4.08502 4.13360 4.15066 4.20707 4.37128 4.44372 4.54172 4.55961 4.57741 4.61578 4.71209 4.75635 4.76934 4.79123 4.84452 4.87296 4.90063 4.92873 4.97502 4.99441 5.07751 5.14735 5.23152 5.34473 5.35741 5.49794 5.56221 5.89973 6.29480 6.37829 6.88186 6.89025 7.22882 7.83171 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.002873 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.036786 B = 9741.909066 C =10650.917302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.167 3.833 3 C -0.129 4.129 4 C -0.156 4.156 5 N -0.364 5.364 6 C 0.068 3.932 7 C -0.243 4.243 8 C 0.022 3.978 9 O -0.899 6.899 10 Si 0.951 3.049 11 H -0.277 1.277 12 H -0.321 1.321 13 H -0.188 1.188 14 C 0.485 3.515 15 O -0.567 6.567 16 N -0.662 5.662 17 C 0.190 3.810 18 C -0.111 4.111 19 C -0.013 4.013 20 C -0.093 4.093 21 C 0.267 3.733 22 C -0.170 4.170 23 O -0.864 6.864 24 O -0.440 6.440 25 C 0.016 3.984 26 C -0.101 4.101 27 C 0.026 3.974 28 N -0.293 5.293 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.112 0.888 37 H 0.058 0.942 38 H 0.140 0.860 39 H 0.433 0.567 40 H 0.212 0.788 41 H 0.249 0.751 42 H 0.118 0.882 43 H 0.301 0.699 44 H 0.182 0.818 45 H 0.091 0.909 46 H 0.111 0.889 47 H 0.164 0.836 48 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.529 24.237 -2.899 30.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.085 3.915 3 C -0.187 4.187 4 C -0.214 4.214 5 N -0.149 5.149 6 C -0.078 4.078 7 C -0.255 4.255 8 C -0.080 4.080 9 O -0.845 6.845 10 Si 0.775 3.225 11 H -0.202 1.202 12 H -0.249 1.249 13 H -0.112 1.112 14 C 0.277 3.723 15 O -0.443 6.443 16 N -0.314 5.314 17 C 0.093 3.907 18 C -0.130 4.130 19 C -0.030 4.030 20 C -0.094 4.094 21 C 0.257 3.743 22 C -0.190 4.190 23 O -0.689 6.689 24 O -0.384 6.384 25 C -0.065 4.065 26 C -0.137 4.137 27 C -0.159 4.159 28 N -0.114 5.114 29 H 0.074 0.926 30 H 0.128 0.872 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.158 0.842 39 H 0.274 0.726 40 H 0.228 0.772 41 H 0.265 0.735 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.196 0.804 45 H 0.107 0.893 46 H 0.129 0.871 47 H 0.181 0.819 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 16.650 25.315 -3.052 30.453 hybrid contribution -1.165 -4.274 0.152 4.433 sum 15.485 21.041 -2.900 26.285 Atomic orbital electron populations 1.22255 0.92751 1.02267 1.04113 1.21101 0.94864 0.94619 0.80887 1.21834 1.01639 0.91343 1.03857 1.22232 1.01793 1.00519 0.96826 1.49083 1.48066 1.03207 1.14533 1.21831 1.01211 0.85965 0.98768 1.21082 1.10967 0.96303 0.97163 1.22653 0.87313 0.91045 1.06968 1.95001 1.52513 1.56782 1.80210 0.86288 0.81765 0.77788 0.76699 1.20224 1.24945 1.11173 1.24706 0.89235 0.83453 0.74902 1.90529 1.86265 1.26720 1.40824 1.44240 1.02506 1.23523 1.61096 1.17996 0.87922 0.86968 0.97812 1.22056 0.90099 1.02687 0.98193 1.21774 0.98733 0.87431 0.95034 1.21036 0.96308 0.89393 1.02712 1.29488 0.93861 0.42331 1.08585 1.21290 0.96563 0.95544 1.05644 1.93620 1.55802 1.23329 1.96131 1.95195 1.23873 1.48024 1.71307 1.23496 0.94064 0.90975 0.97979 1.21608 0.90024 0.96797 1.05311 1.24125 1.01936 0.89122 1.00712 1.77005 1.18098 1.21811 0.94519 0.92596 0.87188 0.93908 0.92196 0.88056 0.91948 0.93661 0.86918 0.92263 0.84241 0.72575 0.77157 0.73525 0.86436 0.86929 0.80363 0.89288 0.87124 0.81882 0.76981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 77. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.73 71.98 0.63 -2.94 16 2 C 0.17 4.16 1.24 3.60 0.00 4.16 16 3 C -0.13 -2.41 8.09 71.98 0.58 -1.83 16 4 C -0.16 -3.49 8.29 71.98 0.60 -2.89 16 5 N -0.36 -12.60 3.43 -307.85 -1.06 -13.66 16 6 C 0.07 3.04 10.02 83.54 0.84 3.88 16 7 C -0.24 -11.15 4.40 -20.14 -0.09 -11.23 16 8 C 0.02 1.22 0.78 29.10 0.02 1.24 16 9 O -0.90 -66.63 16.76 -129.94 -2.18 -68.81 16 10 Si 0.95 44.52 24.78 68.60 1.70 46.22 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 12 H -0.32 -17.44 7.11 99.48 0.71 -16.74 16 13 H -0.19 -5.67 6.83 99.48 0.68 -4.99 16 14 C 0.48 25.73 5.74 87.66 0.50 26.23 16 15 O -0.57 -37.05 14.20 15.98 0.23 -36.82 16 16 N -0.66 -23.96 4.82 -303.43 -1.46 -25.42 16 17 C 0.19 5.92 6.28 38.17 0.24 6.16 16 18 C -0.11 -1.56 9.94 22.45 0.22 -1.33 16 19 C -0.01 -0.10 9.72 22.24 0.22 0.12 16 20 C -0.09 -1.71 5.79 -19.66 -0.11 -1.82 16 21 C 0.27 9.78 9.44 22.70 0.21 10.00 16 22 C -0.17 -7.19 8.47 22.54 0.19 -7.00 16 23 O -0.86 -55.36 17.84 -127.95 -2.28 -57.65 16 24 O -0.44 -17.73 14.34 -127.95 -1.83 -19.56 16 25 C 0.02 0.33 7.08 71.84 0.51 0.84 16 26 C -0.10 -1.07 5.95 29.63 0.18 -0.89 16 27 C 0.03 0.91 9.87 85.23 0.84 1.75 16 28 N -0.29 -9.76 11.66 -57.02 -0.66 -10.43 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.28 8.04 -2.38 -0.02 1.26 16 35 H 0.04 1.22 7.36 -2.39 -0.02 1.20 16 36 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.14 6.98 7.53 -2.91 -0.02 6.96 16 39 H 0.43 11.42 7.30 -92.70 -0.68 10.74 16 40 H 0.21 0.89 8.06 -2.91 -0.02 0.86 16 41 H 0.25 -1.62 8.06 -2.91 -0.02 -1.64 16 42 H 0.12 6.79 6.39 -2.91 -0.02 6.77 16 43 H 0.30 17.88 9.26 -74.06 -0.69 17.20 16 44 H 0.18 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.16 -0.31 8.12 -2.38 -0.02 -0.33 16 48 H 0.21 5.23 6.99 -2.91 -0.02 5.21 16 Total: -1.00 -132.10 407.23 -1.60 -133.70 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.37 Total: 27.99 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: 5.58 Total: 24.44 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -3.18 Total: -49.51 kcal Atomic # 8 Polarization: -176.77 SS G_CDS: -6.07 Total: -182.84 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.70 Total: 46.22 kcal Total: -132.10 -1.60 -133.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584912563.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.855 kcal (2) G-P(sol) polarization free energy of solvation -132.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -133.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.64 seconds