Wall clock time and date at job start Thu Mar 26 2020 21:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30837 * 125.89934 * 2 1 4 4 N 1.40080 * 108.20930 * 179.97438 * 3 2 1 5 5 C 1.46505 * 126.04085 * 179.97438 * 4 3 2 6 6 C 1.34953 * 107.92469 * 359.75784 * 4 3 2 7 7 C 1.50699 * 126.12881 * 180.23840 * 6 4 3 8 8 C 1.35316 * 107.74091 * 0.38910 * 6 4 3 9 9 C 1.50702 * 126.03702 * 179.87357 * 8 6 4 10 10 O 1.42909 * 109.47160 * 316.88786 * 9 8 6 11 11 Si 1.86293 * 109.47195 * 196.88606 * 9 8 6 12 12 H 1.48502 * 109.47229 * 296.02492 * 11 9 8 13 13 H 1.48498 * 109.47119 * 56.02448 * 11 9 8 14 14 H 1.48503 * 109.47215 * 176.02219 * 11 9 8 15 15 C 1.50696 * 109.47285 * 76.88523 * 9 8 6 16 16 O 1.21293 * 120.00330 * 235.12904 * 15 9 8 17 17 N 1.34776 * 120.00288 * 55.40189 * 15 9 8 18 18 C 1.39946 * 120.00530 * 185.47931 * 17 15 9 19 19 C 1.39004 * 120.09006 * 34.88161 * 18 17 15 20 20 C 1.38215 * 120.49093 * 180.08788 * 19 18 17 21 21 C 1.38136 * 120.14776 * 359.92334 * 20 19 18 22 22 C 1.39495 * 119.45147 * 359.94874 * 21 20 19 23 23 C 1.38775 * 120.65051 * 359.89455 * 22 21 20 24 Xx 1.57615 * 118.34542 * 180.29268 * 22 21 20 25 24 O 1.42005 * 122.03361 * 171.33820 * 24 22 21 26 25 O 1.43352 * 115.93748 * 351.35675 * 24 22 21 27 26 C 1.43322 * 111.34142 * 41.24246 * 26 24 22 28 27 C 1.50453 * 120.25961 * 179.76908 * 21 20 19 29 28 H 1.09001 * 109.47337 * 260.33542 * 1 2 3 30 29 H 1.08999 * 109.47392 * 20.33718 * 1 2 3 31 30 H 1.09003 * 109.46968 * 140.33292 * 1 2 3 32 31 H 1.09003 * 109.46923 * 90.02229 * 5 4 3 33 32 H 1.08993 * 109.47432 * 210.02542 * 5 4 3 34 33 H 1.08999 * 109.46983 * 330.02893 * 5 4 3 35 34 H 1.08999 * 109.47318 * 270.17763 * 7 6 4 36 35 H 1.09003 * 109.46906 * 30.17742 * 7 6 4 37 36 H 1.08996 * 109.47031 * 150.17482 * 7 6 4 38 37 H 0.97009 * 119.99289 * 5.48248 * 17 15 9 39 38 H 1.07997 * 119.75395 * 0.06991 * 19 18 17 40 39 H 1.07995 * 119.92709 * 179.90002 * 20 19 18 41 40 H 1.08005 * 120.27668 * 180.11690 * 23 22 21 42 41 H 0.96699 * 114.00103 * 180.02562 * 25 24 22 43 42 H 1.08998 * 109.32386 * 174.09016 * 27 26 24 44 43 H 1.08997 * 109.32906 * 54.61732 * 27 26 24 45 44 H 1.09004 * 109.13370 * 277.44456 * 28 21 20 46 45 H 1.09002 * 109.13550 * 36.62640 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7899 1.5009 0.0003 6 6 3.6142 -0.7153 0.0064 7 6 4.8350 -1.5988 0.0141 8 6 2.3271 -1.1330 0.0006 9 6 1.8599 -2.5657 0.0013 10 8 2.6521 -3.3255 -0.9138 11 14 0.0722 -2.6362 -0.5180 12 1 -0.7629 -1.9278 0.4849 13 1 -0.0846 -1.9834 -1.8426 14 1 -0.3609 -4.0537 -0.6105 15 6 2.0035 -3.1403 1.3870 16 8 2.6425 -4.1568 1.5589 17 7 1.4172 -2.5277 2.4346 18 6 1.6440 -2.9940 3.7345 19 6 2.8858 -3.5129 4.0820 20 6 3.1183 -3.9774 5.3629 21 6 2.1153 -3.9280 6.3115 22 6 0.8692 -3.4051 5.9655 23 6 0.6311 -2.9344 4.6819 24 8 -1.4855 -2.6790 6.8617 25 8 0.0432 -4.0322 8.2979 26 6 1.3989 -3.8055 8.7037 27 6 2.3640 -4.4377 7.7050 28 1 -0.3634 -0.1725 1.0131 29 1 -0.3634 0.9636 -0.3571 30 1 -0.3633 -0.7911 -0.6560 31 1 5.0828 1.7162 1.0279 32 1 5.6093 0.9982 -0.5134 33 1 4.5563 2.4332 -0.5138 34 1 5.1346 -1.8137 -1.0117 35 1 5.6485 -1.0899 0.5312 36 1 4.6050 -2.5319 0.5285 37 1 0.8380 -1.7635 2.2875 38 1 3.6748 -3.5538 3.3457 39 1 4.0860 -4.3803 5.6225 40 1 -0.3354 -2.5290 4.4211 41 1 -2.0897 -2.7212 7.6155 42 1 1.5591 -4.2454 9.6881 43 1 1.5853 -2.7329 8.7561 44 1 2.2339 -5.5198 7.7182 45 1 3.3865 -4.1972 7.9963 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584912767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 21:26:33 Heat of formation + Delta-G solvation = 119.735686 kcal Electronic energy + Delta-G solvation = -31126.313670 eV Core-core repulsion = 26812.763001 eV Total energy + Delta-G solvation = -4313.550668 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 4.77 seconds Orbital eigenvalues (eV) -42.33371 -41.62133 -39.85442 -37.01106 -35.64867 -35.25861 -34.22800 -32.70859 -32.32662 -31.98995 -31.55245 -30.80349 -29.22427 -28.13217 -26.60346 -25.54265 -24.15961 -23.78437 -22.22127 -21.33416 -20.42000 -20.07765 -18.55056 -17.77104 -17.60810 -17.13533 -16.85200 -16.45927 -16.12069 -16.01575 -15.61297 -15.41217 -15.10970 -14.88627 -14.75057 -14.73991 -14.60676 -14.46949 -14.23687 -14.06577 -13.87072 -13.59286 -13.40815 -13.38878 -13.07798 -12.95394 -12.86104 -12.82162 -12.72054 -12.04734 -11.97229 -11.56477 -11.48098 -11.02545 -10.84052 -10.76092 -10.74413 -10.57179 -9.85268 -9.66852 -9.40727 -9.04253 -8.28551 -7.70514 -6.46152 -2.79345 -0.43702 -0.32696 0.96839 1.21733 1.31425 1.41078 1.65834 1.76260 1.92596 2.03060 2.22023 2.58163 3.05303 3.28935 3.51021 3.58369 3.66794 3.76233 3.90159 4.07667 4.17323 4.19362 4.29029 4.32619 4.45024 4.45861 4.46210 4.54154 4.55852 4.61879 4.66753 4.71176 4.79826 4.83610 4.86556 4.92912 4.97849 4.98598 5.08302 5.11126 5.22676 5.35949 5.50316 5.59528 5.84439 6.31477 6.32656 6.84796 6.84923 7.19661 7.83324 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.012725 B = 0.003533 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.871415 B = 7924.473537 C = 8250.342240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.049 3.951 3 N -0.314 5.314 4 N -0.381 5.381 5 C 0.095 3.905 6 C 0.094 3.906 7 C -0.058 4.058 8 C -0.248 4.248 9 C 0.040 3.960 10 O -0.872 6.872 11 Si 0.945 3.055 12 H -0.214 1.214 13 H -0.280 1.280 14 H -0.325 1.325 15 C 0.498 3.502 16 O -0.544 6.544 17 N -0.671 5.671 18 C 0.193 3.807 19 C -0.122 4.122 20 C -0.022 4.022 21 C -0.095 4.095 22 C 0.266 3.734 23 C -0.157 4.157 24 O -0.815 6.815 25 O -0.435 6.435 26 C 0.024 3.976 27 C -0.102 4.102 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.418 0.582 38 H 0.152 0.848 39 H 0.223 0.777 40 H 0.164 0.836 41 H 0.312 0.688 42 H 0.175 0.825 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.929 5.660 12.733 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 N -0.138 5.138 4 N -0.165 5.165 5 C -0.044 4.044 6 C -0.033 4.033 7 C -0.117 4.117 8 C -0.260 4.260 9 C -0.063 4.063 10 O -0.817 6.817 11 Si 0.776 3.224 12 H -0.139 1.139 13 H -0.208 1.208 14 H -0.256 1.256 15 C 0.291 3.709 16 O -0.420 6.420 17 N -0.321 5.321 18 C 0.096 3.904 19 C -0.142 4.142 20 C -0.040 4.040 21 C -0.097 4.097 22 C 0.256 3.744 23 C -0.177 4.177 24 O -0.641 6.641 25 O -0.379 6.379 26 C -0.057 4.057 27 C -0.138 4.138 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.256 0.744 38 H 0.170 0.830 39 H 0.239 0.761 40 H 0.181 0.819 41 H 0.143 0.857 42 H 0.190 0.810 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.144 6.168 11.602 16.599 hybrid contribution -1.535 -0.553 0.217 1.646 sum 8.608 5.615 11.819 15.662 Atomic orbital electron populations 1.21052 0.86468 1.04273 1.03905 1.22360 0.97332 0.90527 1.01341 1.77006 0.87219 1.22260 1.27335 1.48618 1.05739 1.04114 1.58067 1.22122 0.83118 0.94619 1.04565 1.20962 0.97665 0.84279 1.00365 1.20124 0.91925 0.97099 1.02521 1.20889 0.92983 0.96711 1.15386 1.22165 1.06923 0.89095 0.88138 1.95008 1.65455 1.67904 1.53373 0.86911 0.78492 0.74929 0.82046 1.13892 1.20786 1.25594 1.24397 0.75693 0.83234 0.87597 1.90435 1.40939 1.25268 1.85313 1.44466 1.50829 1.33982 1.02792 1.17787 0.90746 0.97691 0.84193 1.21807 0.95536 0.98484 0.98362 1.21429 0.98137 0.96637 0.87775 1.20728 0.85898 1.01803 1.01253 1.29514 0.66726 1.04681 0.73518 1.21080 1.01566 1.06096 0.88995 1.93531 1.45837 1.85690 1.39003 1.95129 1.25314 1.70825 1.46611 1.23312 0.85902 0.99299 0.97236 1.21578 1.03624 1.02928 0.85687 0.87608 0.88171 0.92346 0.89191 0.88082 0.88547 0.91808 0.89091 0.92207 0.74377 0.82999 0.76054 0.81905 0.85689 0.80996 0.89742 0.87372 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 78. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.25 8.17 71.23 0.58 -2.67 16 2 C 0.05 1.97 6.97 43.10 0.30 2.27 16 3 N -0.31 -11.95 12.58 -47.39 -0.60 -12.55 16 4 N -0.38 -13.31 4.01 -356.02 -1.43 -14.74 16 5 C 0.10 2.07 11.09 127.77 1.42 3.49 16 6 C 0.09 3.89 6.87 41.40 0.28 4.18 16 7 C -0.06 -2.21 8.90 71.24 0.63 -1.58 16 8 C -0.25 -11.37 4.39 -20.14 -0.09 -11.46 16 9 C 0.04 2.08 0.46 29.10 0.01 2.10 16 10 O -0.87 -57.81 15.80 -129.99 -2.05 -59.86 16 11 Si 0.95 44.28 21.47 68.60 1.47 45.76 16 12 H -0.21 -7.44 5.28 99.48 0.53 -6.91 16 13 H -0.28 -13.38 6.81 99.48 0.68 -12.70 16 14 H -0.33 -17.08 7.11 99.48 0.71 -16.37 16 15 C 0.50 23.64 5.27 87.66 0.46 24.10 16 16 O -0.54 -28.61 14.32 15.92 0.23 -28.38 16 17 N -0.67 -24.92 4.90 -303.43 -1.49 -26.40 16 18 C 0.19 6.12 6.25 38.17 0.24 6.35 16 19 C -0.12 -3.22 8.64 22.45 0.19 -3.03 16 20 C -0.02 -0.36 9.72 22.24 0.22 -0.14 16 21 C -0.10 -1.84 5.79 -19.66 -0.11 -1.95 16 22 C 0.27 7.98 9.44 22.70 0.21 8.20 16 23 C -0.16 -4.91 9.79 22.54 0.22 -4.69 16 24 O -0.81 -39.71 17.84 -127.95 -2.28 -42.00 16 25 O -0.44 -14.90 14.34 -127.95 -1.83 -16.73 16 26 C 0.02 0.43 7.08 71.85 0.51 0.94 16 27 C -0.10 -1.18 5.95 29.63 0.18 -1.00 16 28 H 0.11 2.85 7.30 -2.39 -0.02 2.83 16 29 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.06 2.10 2.65 -2.39 -0.01 2.10 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 1.80 7.68 -2.39 -0.02 1.78 16 33 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 2.54 8.14 -2.39 -0.02 2.53 16 35 H 0.09 2.46 7.74 -2.39 -0.02 2.44 16 36 H 0.06 2.70 7.13 -2.39 -0.02 2.68 16 37 H 0.42 13.90 7.87 -92.70 -0.73 13.17 16 38 H 0.15 4.58 6.54 -2.91 -0.02 4.56 16 39 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.16 5.37 8.01 -2.91 -0.02 5.35 16 41 H 0.31 14.13 9.26 -74.06 -0.69 13.45 16 42 H 0.18 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.15 0.26 8.12 -2.39 -0.02 0.24 16 Total: -1.00 -100.70 376.60 -2.53 -103.23 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.20 Total: 26.57 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 5.26 Total: 25.11 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -3.51 Total: -53.69 kcal Atomic # 8 Polarization: -141.03 SS G_CDS: -5.94 Total: -146.97 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.47 Total: 45.76 kcal Total: -100.70 -2.53 -103.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584912767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.964 kcal (2) G-P(sol) polarization free energy of solvation -100.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.77 seconds