Wall clock time and date at job start Thu Mar 26 2020 21:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34949 * 126.03757 * 2 1 4 4 C 1.35313 * 107.74401 * 180.14453 * 3 2 1 5 5 C 1.50701 * 126.03811 * 179.87116 * 4 3 2 6 6 O 1.42897 * 109.47499 * 334.71846 * 5 4 3 7 7 Si 1.86306 * 109.47233 * 214.71505 * 5 4 3 8 8 H 1.48501 * 109.47189 * 300.00510 * 7 5 4 9 9 H 1.48502 * 109.46686 * 60.00293 * 7 5 4 10 10 H 1.48495 * 109.47174 * 180.02562 * 7 5 4 11 11 C 1.50703 * 109.46713 * 94.72105 * 5 4 3 12 12 O 1.21286 * 119.99659 * 239.99633 * 11 5 4 13 13 N 1.34771 * 120.00664 * 60.27295 * 11 5 4 14 14 C 1.39946 * 120.00186 * 174.45888 * 13 11 5 15 15 C 1.39010 * 120.09041 * 146.90127 * 14 13 11 16 16 C 1.38209 * 120.48955 * 180.08606 * 15 14 13 17 17 C 1.38139 * 120.15424 * 359.92652 * 16 15 14 18 18 C 1.39499 * 119.44297 * 359.94768 * 17 16 15 19 19 C 1.38770 * 120.65698 * 359.88913 * 18 17 16 20 Xx 1.57615 * 118.34053 * 180.29278 * 18 17 16 21 20 O 1.42008 * 122.03312 * 171.33711 * 20 18 17 22 21 O 1.43353 * 115.94059 * 351.35404 * 20 18 17 23 22 C 1.43323 * 111.33965 * 41.24264 * 22 20 18 24 23 C 1.53000 * 109.32746 * 174.08944 * 23 22 20 25 24 C 1.52995 * 109.32872 * 54.61859 * 23 22 20 26 25 C 1.50451 * 120.26232 * 179.76733 * 17 16 15 27 26 C 1.39868 * 107.92305 * 359.61066 * 4 3 2 28 27 N 1.30842 * 108.20014 * 0.24307 * 27 4 3 29 28 H 1.08998 * 109.47454 * 270.26250 * 1 2 3 30 29 H 1.09000 * 109.46922 * 30.26325 * 1 2 3 31 30 H 1.08999 * 109.47255 * 150.26161 * 1 2 3 32 31 H 1.08001 * 126.13070 * 359.97438 * 3 2 1 33 32 H 0.97006 * 119.99663 * 354.46574 * 13 11 5 34 33 H 1.08001 * 119.75217 * 0.11594 * 15 14 13 35 34 H 1.07998 * 119.92504 * 179.97438 * 16 15 14 36 35 H 1.08001 * 120.28431 * 180.11691 * 19 18 17 37 36 H 0.96698 * 113.99748 * 180.02562 * 21 20 18 38 37 H 1.08999 * 109.47381 * 180.87502 * 24 23 22 39 38 H 1.08997 * 109.47019 * 300.87554 * 24 23 22 40 39 H 1.09003 * 109.47092 * 60.87451 * 24 23 22 41 40 H 1.09003 * 109.47014 * 299.12502 * 25 23 22 42 41 H 1.08998 * 109.47600 * 59.12142 * 25 23 22 43 42 H 1.08999 * 109.47927 * 179.12607 * 25 23 22 44 43 H 1.09003 * 109.13317 * 277.43902 * 26 17 16 45 44 H 1.08994 * 109.13844 * 36.62681 * 26 17 16 46 45 H 1.08002 * 125.90178 * 180.26118 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0072 6 8 4.4431 2.8123 -0.5825 7 14 6.1117 0.7337 -1.0107 8 1 6.4493 -0.5830 -0.4128 9 1 5.6385 0.5378 -2.4046 10 1 7.3183 1.5993 -1.0140 11 6 5.2481 1.7440 1.4074 12 8 5.3063 2.8609 1.8767 13 7 5.6180 0.6814 2.1492 14 6 6.1725 0.8737 3.4197 15 6 5.9372 -0.0514 4.4302 16 6 6.4793 0.1313 5.6883 17 6 7.2630 1.2378 5.9522 18 6 7.5025 2.1660 4.9388 19 6 6.9637 1.9860 3.6727 20 8 8.8491 4.3100 4.2567 21 8 8.7539 3.5930 6.6457 22 6 9.0800 2.3431 7.2667 23 6 9.5842 2.6002 8.6882 24 6 10.1801 1.6491 6.4610 25 6 7.8500 1.4418 7.3224 26 6 3.5347 -0.7321 0.0037 27 7 2.2891 -1.1328 0.0056 28 1 -0.3634 0.0047 1.0276 29 1 -0.3633 0.8876 -0.5179 30 1 -0.3634 -0.8923 -0.5098 31 1 1.9282 2.1194 -0.0004 32 1 5.5001 -0.2169 1.8024 33 1 5.3268 -0.9197 4.2304 34 1 6.2902 -0.5930 6.4668 35 1 7.1545 2.7075 2.8920 36 1 9.3971 5.0351 4.5866 37 1 9.8477 1.6522 9.1573 38 1 10.4631 3.2438 8.6511 39 1 8.8011 3.0877 9.2689 40 1 9.8230 1.4567 5.4493 41 1 11.0601 2.2909 6.4196 42 1 10.4409 0.7053 6.9398 43 1 7.1003 1.8999 7.9676 44 1 8.1350 0.4748 7.7367 45 1 4.4054 -1.3711 0.0073 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584919889.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 21:29:01 Heat of formation + Delta-G solvation = 97.940076 kcal Electronic energy + Delta-G solvation = -30521.464728 eV Core-core repulsion = 26206.968931 eV Total energy + Delta-G solvation = -4314.495797 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 5.65 seconds Orbital eigenvalues (eV) -42.14563 -41.63416 -40.07888 -38.24674 -35.87543 -34.78608 -33.32840 -32.72955 -32.41131 -32.05219 -31.40396 -30.25589 -28.40745 -28.28930 -27.35718 -25.53457 -24.10666 -22.86497 -21.95996 -21.65976 -20.64570 -20.24952 -18.54348 -18.01744 -17.54631 -17.08082 -16.64657 -16.29403 -16.23406 -15.96772 -15.54340 -15.38770 -15.25929 -15.11435 -14.94903 -14.84730 -14.48928 -14.43595 -14.05690 -13.61836 -13.52430 -13.39482 -13.37345 -13.28799 -13.10133 -12.86416 -12.79405 -12.59360 -12.42550 -12.37356 -12.13810 -11.99115 -11.56200 -11.43774 -11.09325 -10.81562 -10.65868 -10.56297 -10.19355 -9.73646 -9.42208 -9.17378 -8.41689 -7.79372 -6.55191 -2.71664 -0.46307 -0.28954 1.00880 1.22890 1.26114 1.47611 1.71433 1.79677 1.86998 2.18876 2.23777 2.60893 3.00077 3.23058 3.45840 3.64466 3.75880 3.81258 3.89683 4.01767 4.05780 4.20489 4.24873 4.37414 4.41566 4.48321 4.57540 4.62341 4.64538 4.67819 4.69584 4.72611 4.80511 4.81722 4.86868 4.92361 4.95520 5.00309 5.12741 5.21474 5.27459 5.50054 5.52110 5.67389 5.84285 6.22266 6.38232 6.76294 6.82463 7.22904 7.82403 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.016370 B = 0.003005 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.060426 B = 9314.450079 C = 9997.899862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.383 5.383 3 C 0.063 3.937 4 C -0.244 4.244 5 C 0.021 3.979 6 O -0.900 6.900 7 Si 0.951 3.049 8 H -0.188 1.188 9 H -0.276 1.276 10 H -0.320 1.320 11 C 0.484 3.516 12 O -0.566 6.566 13 N -0.662 5.662 14 C 0.190 3.810 15 C -0.111 4.111 16 C -0.015 4.015 17 C -0.095 4.095 18 C 0.271 3.729 19 C -0.170 4.170 20 O -0.820 6.820 21 O -0.438 6.438 22 C 0.063 3.937 23 C -0.111 4.111 24 C -0.153 4.153 25 C -0.089 4.089 26 C 0.032 3.968 27 N -0.302 5.302 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.151 0.849 32 H 0.433 0.567 33 H 0.212 0.788 34 H 0.247 0.753 35 H 0.119 0.881 36 H 0.307 0.693 37 H 0.123 0.877 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.041 0.959 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.160 0.840 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 -22.867 18.810 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.167 5.167 3 C -0.083 4.083 4 C -0.256 4.256 5 C -0.081 4.081 6 O -0.845 6.845 7 Si 0.775 3.225 8 H -0.111 1.111 9 H -0.201 1.201 10 H -0.248 1.248 11 C 0.277 3.723 12 O -0.443 6.443 13 N -0.314 5.314 14 C 0.093 3.907 15 C -0.131 4.131 16 C -0.032 4.032 17 C -0.097 4.097 18 C 0.261 3.739 19 C -0.190 4.190 20 O -0.646 6.646 21 O -0.384 6.384 22 C 0.014 3.986 23 C -0.168 4.168 24 C -0.210 4.210 25 C -0.125 4.125 26 C -0.154 4.154 27 N -0.125 5.125 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.169 0.831 32 H 0.274 0.726 33 H 0.229 0.771 34 H 0.263 0.737 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.178 0.822 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.363 -23.533 18.028 29.739 hybrid contribution 1.369 4.020 -1.000 4.363 sum -0.994 -19.513 17.029 25.917 Atomic orbital electron populations 1.22125 0.72170 1.05507 1.04504 1.48737 1.07617 1.02874 1.57458 1.22100 0.91757 0.92829 1.01589 1.21140 0.96238 0.94208 1.14042 1.22679 0.98506 0.98450 0.88436 1.95002 1.88749 1.25043 1.75716 0.86279 0.75954 0.78122 0.82181 1.11108 1.20077 1.24837 1.24692 0.73882 0.83581 0.90175 1.90527 1.53667 1.27329 1.72744 1.44232 1.60760 1.11798 1.14576 1.17973 0.91156 0.92682 0.88903 1.22038 1.00477 1.00491 0.90060 1.21751 0.91330 0.92016 0.98082 1.21015 1.00786 0.91261 0.96608 1.29357 0.88641 0.62013 0.93886 1.21273 0.99601 1.01155 0.97020 1.93614 1.74107 1.47985 1.48887 1.95170 1.89416 1.23000 1.30770 1.22340 0.94665 0.88087 0.93491 1.22331 1.01286 1.05018 0.88156 1.22536 0.97854 1.01562 0.99090 1.21566 0.96522 1.03921 0.90484 1.24160 0.96376 0.93470 1.01365 1.77048 1.01532 1.08683 1.25232 0.89396 0.88754 0.87845 0.83140 0.72557 0.77105 0.73699 0.86326 0.86262 0.85846 0.92794 0.91102 0.94858 0.93940 0.86745 0.87378 0.82216 0.76740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 92. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.07 11.47 127.77 1.47 3.53 16 2 N -0.38 -12.95 4.01 -369.56 -1.48 -14.43 16 3 C 0.06 2.75 10.91 83.54 0.91 3.66 16 4 C -0.24 -11.02 4.40 -20.14 -0.09 -11.11 16 5 C 0.02 1.14 0.78 29.10 0.02 1.17 16 6 O -0.90 -65.90 16.76 -129.94 -2.18 -68.08 16 7 Si 0.95 43.75 24.77 68.60 1.70 45.45 16 8 H -0.19 -5.50 6.83 99.48 0.68 -4.82 16 9 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 10 H -0.32 -17.11 7.11 99.48 0.71 -16.40 16 11 C 0.48 25.39 5.74 87.66 0.50 25.89 16 12 O -0.57 -36.55 14.20 15.99 0.23 -36.33 16 13 N -0.66 -23.65 4.81 -303.43 -1.46 -25.11 16 14 C 0.19 5.89 6.28 38.17 0.24 6.13 16 15 C -0.11 -1.59 9.94 22.45 0.22 -1.36 16 16 C -0.01 -0.13 9.72 22.24 0.22 0.09 16 17 C -0.10 -1.88 5.24 -19.66 -0.10 -1.98 16 18 C 0.27 9.99 8.12 22.70 0.18 10.18 16 19 C -0.17 -7.15 8.47 22.54 0.19 -6.96 16 20 O -0.82 -50.80 17.84 -127.95 -2.28 -53.09 16 21 O -0.44 -18.11 13.61 -127.95 -1.74 -19.85 16 22 C 0.06 1.48 1.09 -10.93 -0.01 1.46 16 23 C -0.11 -1.68 8.81 71.98 0.63 -1.04 16 24 C -0.15 -3.50 8.56 71.98 0.62 -2.88 16 25 C -0.09 -1.20 4.67 29.63 0.14 -1.06 16 26 C 0.03 1.07 9.88 85.24 0.84 1.91 16 27 N -0.30 -10.06 12.58 -57.02 -0.72 -10.78 16 28 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.15 7.14 8.04 -2.91 -0.02 7.12 16 32 H 0.43 11.19 7.31 -92.70 -0.68 10.52 16 33 H 0.21 0.90 8.06 -2.91 -0.02 0.88 16 34 H 0.25 -1.37 8.06 -2.91 -0.02 -1.40 16 35 H 0.12 6.75 6.39 -2.91 -0.02 6.73 16 36 H 0.31 17.63 9.26 -74.06 -0.69 16.95 16 37 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.03 0.95 6.39 -2.39 -0.02 0.94 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.16 0.17 8.12 -2.39 -0.02 0.15 16 45 H 0.22 5.14 7.00 -2.91 -0.02 5.12 16 Total: -1.00 -128.23 385.63 -1.54 -129.78 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.41 Total: 24.82 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 5.98 Total: 27.62 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -3.66 Total: -50.32 kcal Atomic # 8 Polarization: -171.37 SS G_CDS: -5.98 Total: -177.35 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.70 Total: 45.45 kcal Total: -128.23 -1.54 -129.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584919889.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.715 kcal (2) G-P(sol) polarization free energy of solvation -128.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -129.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.65 seconds