Wall clock time and date at job start Fri Mar 27 2020 01:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 120.00568 * 2 1 4 4 C 1.38232 * 120.00420 * 179.97438 * 3 2 1 5 5 C 1.38242 * 119.99925 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00051 * 180.02562 * 5 4 3 7 7 O 1.42902 * 109.47189 * 334.99673 * 6 5 4 8 8 Si 1.86299 * 109.46968 * 214.99972 * 6 5 4 9 9 H 1.48493 * 109.47290 * 300.00117 * 8 6 5 10 10 H 1.48506 * 109.46926 * 59.99828 * 8 6 5 11 11 H 1.48497 * 109.47144 * 179.97438 * 8 6 5 12 12 C 1.50699 * 109.47553 * 94.99687 * 6 5 4 13 13 O 1.21278 * 120.00437 * 240.00032 * 12 6 5 14 14 N 1.34774 * 119.99452 * 60.00226 * 12 6 5 15 15 C 1.39955 * 119.99982 * 185.10704 * 14 12 6 16 16 C 1.38994 * 120.09207 * 213.03584 * 15 14 12 17 17 C 1.38220 * 120.48743 * 179.79411 * 16 15 14 18 18 C 1.38134 * 120.15013 * 0.58375 * 17 16 15 19 19 C 1.39498 * 119.44823 * 359.58193 * 18 17 16 20 20 C 1.38765 * 120.65116 * 0.15064 * 19 18 17 21 Xx 1.57614 * 118.34192 * 180.32004 * 19 18 17 22 21 O 1.42003 * 122.03049 * 171.35238 * 21 19 18 23 22 O 1.43354 * 115.94229 * 351.36620 * 21 19 18 24 23 C 1.43322 * 111.33677 * 41.24092 * 23 21 19 25 24 C 1.53005 * 109.32600 * 54.60898 * 24 23 21 26 25 C 1.52998 * 109.32845 * 174.08328 * 24 23 21 27 26 C 1.50459 * 120.26216 * 179.44049 * 18 17 16 28 27 C 1.38234 * 119.99868 * 0.27544 * 5 4 3 29 28 C 1.38239 * 119.99954 * 359.51768 * 28 5 4 30 29 H 1.08996 * 109.46855 * 89.99592 * 1 2 3 31 30 H 1.08993 * 109.47114 * 209.99727 * 1 2 3 32 31 H 1.08996 * 109.46652 * 330.00035 * 1 2 3 33 32 H 1.08007 * 119.99472 * 359.97438 * 3 2 1 34 33 H 1.08001 * 120.00079 * 180.02562 * 4 3 2 35 34 H 0.97002 * 120.00658 * 5.38153 * 14 12 6 36 35 H 1.08000 * 119.75642 * 0.07043 * 16 15 14 37 36 H 1.08001 * 119.92438 * 180.29124 * 17 16 15 38 37 H 1.07996 * 120.27632 * 179.97438 * 20 19 18 39 38 H 0.96700 * 114.00252 * 179.97438 * 22 21 19 40 39 H 1.08998 * 109.47269 * 59.99620 * 25 24 23 41 40 H 1.09001 * 109.46939 * 179.97438 * 25 24 23 42 41 H 1.08998 * 109.46801 * 299.99549 * 25 24 23 43 42 H 1.09000 * 109.47083 * 59.99849 * 26 24 23 44 43 H 1.08996 * 109.47438 * 180.02562 * 26 24 23 45 44 H 1.09002 * 109.47093 * 300.00311 * 26 24 23 46 45 H 1.08999 * 109.14016 * 36.52986 * 27 18 17 47 46 H 1.09000 * 109.09030 * 277.37545 * 27 18 17 48 47 H 1.08001 * 120.00344 * 179.72489 * 28 5 4 49 48 H 1.07999 * 120.00114 * 180.27210 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2718 -0.0002 0.0016 6 6 5.7787 -0.0003 0.0028 7 8 6.2556 1.2205 -0.5669 8 14 6.4004 -1.4396 -1.0036 9 1 5.9049 -2.7081 -0.4117 10 1 5.9064 -1.3181 -2.3988 11 1 7.8854 -1.4393 -1.0030 12 6 6.2801 -0.1234 1.4186 13 8 6.9770 0.7483 1.8931 14 7 5.9539 -1.2024 2.1574 15 6 6.3288 -1.2676 3.5042 16 6 6.6417 -2.4924 4.0820 17 6 7.0170 -2.5657 5.4102 18 6 7.0727 -1.4199 6.1798 19 6 6.7558 -0.1901 5.6026 20 6 6.3837 -0.1098 4.2682 21 8 6.7070 2.4071 5.9591 22 8 7.0455 0.8781 7.9029 23 6 8.0076 -0.1604 8.1267 24 6 9.2988 0.1757 7.3778 25 6 8.3061 -0.2599 9.6240 26 6 7.4688 -1.4985 7.6291 27 6 3.5805 -1.1973 -0.0036 28 6 2.1982 -1.1972 0.0002 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 1.6583 2.1324 -0.0004 33 1 4.1207 2.1323 0.0010 34 1 5.4628 -1.9356 1.7547 35 1 6.5955 -3.3929 3.4876 36 1 7.2628 -3.5217 5.8487 37 1 6.1392 0.8454 3.8277 38 1 6.7736 3.1144 6.6150 39 1 9.6941 1.1238 7.7424 40 1 10.0325 -0.6125 7.5469 41 1 9.0898 0.2553 6.3110 42 1 7.3875 -0.4915 10.1630 43 1 9.0381 -1.0488 9.7969 44 1 8.7058 0.6901 9.9787 45 1 8.2390 -2.2604 7.7484 46 1 6.5974 -1.7756 8.2223 47 1 4.1204 -2.1327 -0.0073 48 1 1.6581 -2.1325 0.0005 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584918511.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 01:30:47 Heat of formation + Delta-G solvation = 35.772979 kcal Electronic energy + Delta-G solvation = -31855.953393 eV Core-core repulsion = 27541.387510 eV Total energy + Delta-G solvation = -4314.565883 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.158 amu Computer time = 5.38 seconds Orbital eigenvalues (eV) -41.94148 -40.51721 -39.78208 -38.29151 -35.95836 -35.01849 -32.83855 -32.43031 -32.18342 -32.07169 -31.73071 -31.39280 -28.52056 -28.35530 -27.39529 -25.41542 -24.15434 -23.44058 -22.88665 -21.95341 -20.97737 -20.31953 -18.61264 -18.07115 -17.23277 -17.05021 -16.77462 -16.38988 -16.26838 -15.91171 -15.70697 -15.46321 -15.37569 -15.10006 -14.97721 -14.84171 -14.60879 -14.40107 -14.35034 -14.21060 -13.80182 -13.54788 -13.43201 -13.25820 -13.07128 -12.93685 -12.83796 -12.76869 -12.65677 -12.44878 -12.34249 -12.29125 -12.02277 -11.79150 -11.65383 -11.39316 -11.07058 -10.81856 -10.73435 -10.59212 -9.78175 -9.75301 -9.45853 -9.27908 -8.51363 -7.89180 -6.58211 -2.74077 -0.49750 -0.32564 0.47987 0.59123 1.14606 1.25825 1.45096 1.67332 1.99755 2.16373 2.50781 2.94124 2.99130 3.19546 3.41290 3.61763 3.72289 3.85532 3.98393 4.01403 4.03340 4.10448 4.19933 4.24597 4.32866 4.40711 4.53427 4.57616 4.58593 4.61360 4.63093 4.70841 4.75846 4.77915 4.85245 4.89703 4.91791 4.95058 4.96398 5.05267 5.09672 5.18250 5.22785 5.26869 5.37940 5.45131 5.60615 5.62465 5.76182 5.98948 6.25962 6.32076 6.75228 7.14218 7.73104 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.012477 B = 0.002985 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.551213 B = 9376.851217 C = 9863.026896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.108 4.108 3 C -0.134 4.134 4 C -0.128 4.128 5 C -0.099 4.099 6 C -0.041 4.041 7 O -0.903 6.903 8 Si 0.974 3.026 9 H -0.173 1.173 10 H -0.278 1.278 11 H -0.303 1.303 12 C 0.482 3.518 13 O -0.567 6.567 14 N -0.661 5.661 15 C 0.188 3.812 16 C -0.109 4.109 17 C -0.013 4.013 18 C -0.094 4.094 19 C 0.270 3.730 20 C -0.170 4.170 21 O -0.831 6.831 22 O -0.431 6.431 23 C 0.063 3.937 24 C -0.156 4.156 25 C -0.110 4.110 26 C -0.087 4.087 27 C -0.147 4.147 28 C -0.106 4.106 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.066 0.934 34 H 0.433 0.567 35 H 0.220 0.780 36 H 0.252 0.748 37 H 0.113 0.887 38 H 0.304 0.696 39 H 0.040 0.960 40 H 0.114 0.886 41 H 0.023 0.977 42 H 0.076 0.924 43 H 0.124 0.876 44 H 0.052 0.948 45 H 0.160 0.840 46 H 0.118 0.882 47 H 0.157 0.843 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.304 -27.815 13.934 31.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 C -0.152 4.152 4 C -0.146 4.146 5 C -0.100 4.100 6 C -0.140 4.140 7 O -0.849 6.849 8 Si 0.795 3.205 9 H -0.096 1.096 10 H -0.204 1.204 11 H -0.230 1.230 12 C 0.274 3.726 13 O -0.443 6.443 14 N -0.314 5.314 15 C 0.091 3.909 16 C -0.129 4.129 17 C -0.030 4.030 18 C -0.095 4.095 19 C 0.261 3.739 20 C -0.190 4.190 21 O -0.657 6.657 22 O -0.376 6.376 23 C 0.014 3.986 24 C -0.213 4.213 25 C -0.166 4.166 26 C -0.123 4.123 27 C -0.165 4.165 28 C -0.123 4.123 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.085 0.915 34 H 0.275 0.725 35 H 0.237 0.763 36 H 0.268 0.732 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.060 0.940 40 H 0.132 0.868 41 H 0.042 0.958 42 H 0.095 0.905 43 H 0.142 0.858 44 H 0.071 0.929 45 H 0.177 0.823 46 H 0.136 0.864 47 H 0.174 0.826 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.717 -27.912 12.995 31.012 hybrid contribution 0.277 4.483 0.089 4.492 sum -3.439 -23.429 13.084 27.054 Atomic orbital electron populations 1.20763 0.88282 1.03672 1.03103 1.20305 0.97895 0.92394 1.00212 1.21207 0.92574 0.99357 1.02096 1.20962 0.94718 0.98207 1.00737 1.21092 0.97089 0.94179 0.97603 1.23959 0.91639 1.08473 0.89883 1.95014 1.83439 1.30241 1.76207 0.86024 0.77963 0.75458 0.81089 1.09588 1.20390 1.23029 1.24560 0.77910 0.79449 0.90643 1.90536 1.38649 1.41793 1.73296 1.44210 1.57168 1.23187 1.06822 1.17996 0.97870 0.90691 0.84352 1.22126 0.97409 0.96155 0.97184 1.21821 0.95145 0.95416 0.90639 1.21085 1.02346 0.84595 1.01520 1.29370 1.07391 0.56277 0.80902 1.21256 1.05447 1.01177 0.91154 1.93635 1.98524 1.34898 1.38608 1.95162 1.60312 1.54191 1.27954 1.22360 0.90800 0.90356 0.95060 1.22564 0.97554 1.03043 0.98178 1.22337 1.03788 1.03924 0.86595 1.21581 1.05411 0.98310 0.87020 1.21449 0.95639 0.96793 1.02611 1.21400 0.93013 0.98703 0.99207 0.90232 0.89159 0.91871 0.86044 0.91529 0.72481 0.76338 0.73250 0.86954 0.86534 0.94038 0.86758 0.95783 0.90541 0.85827 0.92925 0.82266 0.86372 0.82575 0.81158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 78. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 10.01 71.24 0.71 -1.37 16 2 C -0.11 -3.33 5.88 -19.86 -0.12 -3.45 16 3 C -0.13 -5.44 9.70 22.27 0.22 -5.23 16 4 C -0.13 -6.75 9.35 22.27 0.21 -6.54 16 5 C -0.10 -4.83 4.46 -19.87 -0.09 -4.91 16 6 C -0.04 -2.35 0.72 29.10 0.02 -2.33 16 7 O -0.90 -69.10 16.04 -129.94 -2.08 -71.18 16 8 Si 0.97 41.89 24.12 68.60 1.65 43.54 16 9 H -0.17 -4.21 6.29 99.48 0.63 -3.58 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 12 C 0.48 26.03 5.74 87.66 0.50 26.53 16 13 O -0.57 -37.89 14.18 16.01 0.23 -37.66 16 14 N -0.66 -23.87 4.90 -303.44 -1.49 -25.36 16 15 C 0.19 5.86 6.28 38.17 0.24 6.10 16 16 C -0.11 -1.45 9.94 22.45 0.22 -1.23 16 17 C -0.01 -0.10 9.72 22.24 0.22 0.11 16 18 C -0.09 -1.83 5.26 -19.66 -0.10 -1.93 16 19 C 0.27 10.14 8.11 22.70 0.18 10.32 16 20 C -0.17 -7.33 8.47 22.54 0.19 -7.14 16 21 O -0.83 -53.37 17.84 -127.95 -2.28 -55.66 16 22 O -0.43 -17.80 13.61 -127.95 -1.74 -19.54 16 23 C 0.06 1.52 1.09 -10.93 -0.01 1.50 16 24 C -0.16 -4.05 8.55 71.98 0.62 -3.43 16 25 C -0.11 -1.65 8.81 71.98 0.63 -1.01 16 26 C -0.09 -1.13 4.67 29.64 0.14 -0.99 16 27 C -0.15 -5.00 7.86 22.27 0.18 -4.83 16 28 C -0.11 -2.92 9.70 22.27 0.22 -2.70 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 31 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 32 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.07 4.24 7.35 -2.91 -0.02 4.22 16 34 H 0.43 10.99 6.58 -92.71 -0.61 10.38 16 35 H 0.22 0.39 8.06 -2.91 -0.02 0.37 16 36 H 0.25 -1.78 8.06 -2.91 -0.02 -1.80 16 37 H 0.11 6.66 6.38 -2.91 -0.02 6.65 16 38 H 0.30 18.12 9.26 -74.06 -0.69 17.43 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.02 0.80 6.40 -2.39 -0.02 0.79 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 43 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.16 0.15 8.12 -2.39 -0.02 0.13 16 46 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.16 3.85 5.14 -2.91 -0.01 3.83 16 48 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -136.50 400.17 -1.15 -137.66 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.39 Total: 30.73 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 4.17 Total: -2.53 kcal Atomic # 7 Polarization: -23.87 SS G_CDS: -1.49 Total: -25.36 kcal Atomic # 8 Polarization: -178.16 SS G_CDS: -5.88 Total: -184.04 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.65 Total: 43.54 kcal Total: -136.50 -1.15 -137.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584918511.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.432 kcal (2) G-P(sol) polarization free energy of solvation -136.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -137.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.38 seconds