removed `/scratch/xiaobo/94192/xbh-8058115.34/working/protonate/xbh-protonated-manual.ism' removed `/scratch/xiaobo/94192/xbh-8058115.34/working/protonate/xbh-protomers-expanded.ism' removed `/scratch/xiaobo/94192/xbh-8058115.34/working/protonate/xbh-protomers.ism' removed directory: `/scratch/xiaobo/94192/xbh-8058115.34/working/protonate' removed `/scratch/xiaobo/94192/xbh-8058115.34/working/input-smiles.ism'