Wall clock time and date at job start Thu Mar 26 2020 23:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99646 * 2 1 4 4 C 1.38218 * 119.99970 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00009 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00047 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00455 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.47626 * 210.00580 * 7 6 5 9 9 Si 1.86302 * 109.46871 * 330.00282 * 7 6 5 10 10 H 1.48496 * 109.47329 * 179.97438 * 9 7 6 11 11 H 1.48504 * 109.47311 * 300.00033 * 9 7 6 12 12 H 1.48506 * 109.47018 * 59.99924 * 9 7 6 13 13 C 1.50698 * 109.47195 * 90.00027 * 7 6 5 14 14 O 1.21284 * 120.00141 * 125.00081 * 13 7 6 15 15 N 1.34778 * 119.99991 * 305.00479 * 13 7 6 16 16 C 1.46500 * 119.99803 * 179.97438 * 15 13 7 17 17 H 1.09004 * 109.52501 * 325.12440 * 16 15 13 18 18 C 1.53118 * 109.52664 * 85.31672 * 16 15 13 19 19 C 1.53034 * 109.28359 * 177.55790 * 18 16 15 20 20 N 1.46845 * 109.51955 * 300.82297 * 19 18 16 21 21 C 1.38590 * 111.00104 * 185.83747 * 20 19 18 22 22 C 1.39359 * 119.53025 * 55.78387 * 21 20 19 23 23 C 1.36895 * 119.38657 * 180.02562 * 22 21 20 24 24 C 1.40360 * 118.48639 * 0.02562 * 23 22 21 25 25 C 1.43194 * 120.47760 * 179.97438 * 24 23 22 26 26 N 9.38786 * 144.57865 * 136.39784 * 16 1 2 27 27 C 1.39580 * 119.03427 * 359.97438 * 24 23 22 28 28 N 1.31710 * 120.51307 * 0.02562 * 27 24 23 29 29 C 1.46845 * 111.20237 * 61.74368 * 20 19 18 30 30 C 1.53039 * 109.52023 * 298.25314 * 29 20 19 31 31 C 1.38208 * 120.00162 * 180.26628 * 2 1 3 32 32 H 1.09002 * 109.46968 * 90.00858 * 1 2 3 33 33 H 1.09005 * 109.47121 * 210.00223 * 1 2 3 34 34 H 1.09004 * 109.47715 * 330.00517 * 1 2 3 35 35 H 1.08000 * 120.00174 * 359.97438 * 3 2 1 36 36 H 1.08001 * 119.99881 * 179.97438 * 4 3 2 37 37 H 1.07996 * 119.99983 * 179.97438 * 5 4 3 38 38 H 0.97001 * 120.00114 * 359.97438 * 15 13 7 39 39 H 1.09004 * 109.50382 * 297.50059 * 18 16 15 40 40 H 1.09009 * 109.50242 * 57.61429 * 18 16 15 41 41 H 1.08993 * 109.46457 * 180.80359 * 19 18 16 42 42 H 1.09000 * 109.45787 * 60.83468 * 19 18 16 43 43 H 1.08000 * 120.31032 * 0.05129 * 22 21 20 44 44 H 1.07999 * 120.75622 * 179.72959 * 23 22 21 45 45 H 1.08007 * 119.73917 * 179.97438 * 27 24 23 46 46 H 1.08998 * 109.46583 * 58.26855 * 29 20 19 47 47 H 1.09006 * 109.46576 * 178.25529 * 29 20 19 48 48 H 1.08998 * 109.50677 * 179.12269 * 30 29 20 49 49 H 1.09003 * 109.50408 * 299.24087 * 30 29 20 50 50 H 1.07997 * 120.00273 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5807 -1.1968 0.0005 7 6 4.3342 -2.5019 0.0000 8 8 3.5618 -3.4977 -0.6737 9 14 5.9617 -2.2789 -0.8788 10 1 6.7045 -3.5647 -0.8789 11 1 5.7137 -1.8498 -2.2787 12 1 6.7645 -1.2440 -0.1787 13 6 4.5859 -2.9373 1.4205 14 8 4.2260 -4.0345 1.7914 15 7 5.2109 -2.1073 2.2790 16 6 5.4551 -2.5304 3.6602 17 1 4.6270 -3.1509 4.0030 18 6 6.7583 -3.3313 3.7273 19 6 7.0394 -3.7182 5.1810 20 7 7.1474 -2.5041 5.9998 21 6 7.5306 -2.8114 7.2957 22 6 8.7024 -3.5339 7.5125 23 6 9.0778 -3.8363 8.7937 24 6 8.2612 -3.4040 9.8503 25 6 8.6130 -3.6972 11.2070 26 7 8.8928 -3.9298 12.2832 27 6 7.1012 -2.6843 9.5592 28 7 6.7769 -2.4148 8.3115 29 6 5.8918 -1.7428 5.9890 30 6 5.5764 -1.2969 4.5593 31 6 2.1980 -1.1969 -0.0056 32 1 -0.3633 -0.0002 -1.0277 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3635 0.8900 0.5138 35 1 1.6582 2.1327 -0.0004 36 1 4.1203 2.1328 0.0001 37 1 5.3517 0.0002 0.0005 38 1 5.4990 -1.2298 1.9824 39 1 6.6627 -4.2333 3.1227 40 1 7.5793 -2.7231 3.3473 41 1 7.9741 -4.2764 5.2340 42 1 6.2248 -4.3378 5.5559 43 1 9.3089 -3.8520 6.6774 44 1 9.9793 -4.3988 8.9869 45 1 6.4643 -2.3465 10.3635 46 1 5.0825 -2.3716 6.3601 47 1 5.9930 -0.8659 6.6286 48 1 4.6364 -0.7452 4.5491 49 1 6.3788 -0.6567 4.1925 50 1 1.6581 -2.1322 -0.0103 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931728085.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 23:33:22 Heat of formation + Delta-G solvation = 7.262127 kcal Electronic energy + Delta-G solvation = -33945.408358 eV Core-core repulsion = 29516.821023 eV Total energy + Delta-G solvation = -4428.587335 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 379.168 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.26601 -39.39741 -38.66634 -37.72295 -36.79556 -34.68242 -33.22214 -33.00724 -31.79158 -31.47136 -30.97564 -29.72123 -28.74258 -26.43239 -25.44695 -24.70894 -23.95553 -22.76803 -22.47637 -21.21769 -20.34212 -19.95455 -19.44660 -18.61485 -17.89637 -17.09390 -16.11848 -15.82780 -15.36200 -15.34290 -14.95103 -14.81621 -14.73298 -14.47639 -14.27130 -14.08984 -13.84738 -13.62946 -13.47864 -13.39495 -13.23200 -13.21151 -13.08868 -12.94009 -12.56970 -12.47864 -12.39307 -12.23416 -11.90535 -11.71730 -11.49973 -11.30237 -11.20770 -10.80696 -10.62247 -10.48702 -10.40094 -10.36034 -10.26075 -10.18982 -9.94147 -9.81835 -9.53212 -8.81393 -8.46331 -8.19793 -7.93224 -7.68316 -5.99289 -5.47111 0.19967 0.80850 2.10899 2.26454 2.27640 2.52795 3.11507 3.19173 3.31513 3.39664 3.46556 3.52748 3.89038 3.96850 4.06438 4.29100 4.49050 4.50307 4.66441 4.68691 4.78318 4.85665 5.05322 5.12811 5.21901 5.28760 5.38004 5.45186 5.45456 5.50742 5.55553 5.58487 5.67806 5.74406 5.75733 5.77948 5.84542 5.92316 6.02112 6.07640 6.09061 6.21377 6.24176 6.36284 6.44571 6.51184 6.55348 6.78087 6.83088 6.91476 6.95390 7.08936 7.22140 7.37727 7.42619 7.48829 7.70289 7.92614 8.52348 9.42922 9.96905 Molecular weight = 379.17amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.002001 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.032812 B =13992.467292 C =14851.248981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.102 4.102 3 C -0.147 4.147 4 C -0.121 4.121 5 C -0.163 4.163 6 C -0.053 4.053 7 C 0.024 3.976 8 O -0.811 6.811 9 Si 0.931 3.069 10 H -0.279 1.279 11 H -0.271 1.271 12 H -0.295 1.295 13 C 0.494 3.506 14 O -0.536 6.536 15 N -0.744 5.744 16 C 0.140 3.860 17 H 0.081 0.919 18 C -0.132 4.132 19 C 0.064 3.936 20 N -0.474 5.474 21 C 0.351 3.649 22 C -0.190 4.190 23 C -0.003 4.003 24 C -0.127 4.127 25 C 0.264 3.736 26 N -0.422 5.422 27 C 0.188 3.812 28 N -0.520 5.520 29 C 0.071 3.929 30 C -0.128 4.128 31 C -0.080 4.080 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.392 0.608 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.166 0.834 46 H 0.057 0.943 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.388 6.886 13.903 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.102 4.102 3 C -0.165 4.165 4 C -0.140 4.140 5 C -0.181 4.181 6 C -0.055 4.055 7 C -0.080 4.080 8 O -0.754 6.754 9 Si 0.760 3.240 10 H -0.205 1.205 11 H -0.196 1.196 12 H -0.225 1.225 13 C 0.284 3.716 14 O -0.410 6.410 15 N -0.401 5.401 16 C 0.034 3.966 17 H 0.099 0.901 18 C -0.171 4.171 19 C -0.061 4.061 20 N -0.189 5.189 21 C 0.118 3.882 22 C -0.213 4.213 23 C -0.031 4.031 24 C -0.134 4.134 25 C -0.051 4.051 26 N -0.098 5.098 27 C 0.026 3.974 28 N -0.234 5.234 29 C -0.056 4.056 30 C -0.167 4.167 31 C -0.098 4.098 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.226 0.774 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.183 0.817 46 H 0.075 0.925 47 H 0.109 0.891 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.662 6.337 14.689 17.738 hybrid contribution 0.279 -0.164 0.047 0.327 sum 7.941 6.173 14.736 17.841 Atomic orbital electron populations 1.20710 0.92219 1.01839 1.01625 1.19953 0.95444 0.93602 1.01189 1.20732 0.94171 0.96633 1.04964 1.20873 0.94154 0.97151 1.01782 1.21220 0.99639 0.92784 1.04466 1.21453 0.95161 0.96179 0.92670 1.22573 1.03017 0.92741 0.89629 1.95082 1.64025 1.47681 1.68651 0.86582 0.78608 0.76524 0.82333 1.20517 1.19613 1.22452 1.23759 0.74221 0.84596 0.89044 1.90442 1.50407 1.22228 1.77970 1.46689 1.63145 1.20156 1.10103 1.20821 0.96766 0.95120 0.83863 0.90076 1.22107 0.98960 1.02107 0.93940 1.22327 1.02227 0.88169 0.93380 1.58848 1.32994 1.21159 1.05945 1.20188 0.90375 0.88220 0.89455 1.21300 0.98246 1.03668 0.98075 1.21186 0.97439 0.93595 0.90865 1.16867 1.00764 1.09357 0.86423 1.25390 0.93784 0.93529 0.92435 1.81282 1.07977 1.09076 1.11477 1.22750 0.91627 0.89573 0.93439 1.67852 1.31382 1.24777 0.99376 1.22019 0.87983 0.98402 0.97214 1.21972 1.02859 0.98116 0.93714 1.20983 0.94370 0.96959 0.97489 0.91855 0.91877 0.92448 0.87466 0.87220 0.86632 0.77359 0.89789 0.90607 0.89463 0.92704 0.83398 0.83789 0.81684 0.92497 0.89054 0.90077 0.90562 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 10.01 36.00 0.36 -1.26 16 2 C -0.10 -1.93 5.88 -104.63 -0.62 -2.54 16 3 C -0.15 -2.49 9.70 -39.58 -0.38 -2.87 16 4 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 5 C -0.16 -3.21 7.64 -39.58 -0.30 -3.52 16 6 C -0.05 -1.27 4.39 -104.62 -0.46 -1.73 16 7 C 0.02 0.66 0.70 -29.04 -0.02 0.64 16 8 O -0.81 -27.84 16.18 -55.09 -0.89 -28.73 16 9 Si 0.93 22.34 24.29 -169.99 -4.13 18.21 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -5.80 6.38 56.52 0.36 -5.44 16 13 C 0.49 12.51 5.92 -10.99 -0.06 12.44 16 14 O -0.54 -15.56 16.17 -14.31 -0.23 -15.79 16 15 N -0.74 -14.26 4.62 -53.68 -0.25 -14.51 16 16 C 0.14 2.17 2.52 -67.81 -0.17 2.00 16 17 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 18 C -0.13 -1.79 5.67 -26.65 -0.15 -1.94 16 19 C 0.06 0.67 5.24 -3.84 -0.02 0.65 16 20 N -0.47 -4.82 4.67 -173.25 -0.81 -5.63 16 21 C 0.35 3.26 6.40 -155.20 -0.99 2.27 16 22 C -0.19 -1.35 9.10 -39.65 -0.36 -1.71 16 23 C 0.00 -0.02 9.85 -39.27 -0.39 -0.41 16 24 C -0.13 -0.90 5.75 -106.68 -0.61 -1.51 16 25 C 0.26 2.27 15.37 -22.48 -0.35 1.93 16 26 N -0.42 -4.67 18.54 41.84 0.78 -3.90 16 27 C 0.19 1.39 10.92 -17.10 -0.19 1.20 16 28 N -0.52 -4.87 8.64 -12.11 -0.10 -4.97 16 29 C 0.07 0.75 4.64 -3.83 -0.02 0.73 16 30 C -0.13 -1.52 5.57 -26.65 -0.15 -1.67 16 31 C -0.08 -1.87 9.00 -39.58 -0.36 -2.22 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 34 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 35 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.12 2.09 5.26 -52.49 -0.28 1.81 16 38 H 0.39 6.79 6.85 -40.82 -0.28 6.51 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 41 H 0.09 0.72 6.64 -51.93 -0.34 0.38 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.15 0.82 7.12 -52.49 -0.37 0.45 16 44 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 46 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 47 H 0.09 0.93 7.70 -51.93 -0.40 0.53 16 48 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.13 3.30 7.48 -52.49 -0.39 2.91 16 LS Contribution 412.02 15.07 6.21 6.21 Total: -1.00 -37.11 412.02 -11.85 -48.96 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.79 Total: 2.12 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -5.64 Total: -1.98 kcal Atomic # 7 Polarization: -28.62 SS G_CDS: -0.39 Total: -29.01 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.12 Total: -44.52 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.13 Total: 18.21 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -37.11 -11.85 -48.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931728085.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.222 kcal (2) G-P(sol) polarization free energy of solvation -37.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds