Wall clock time and date at job start Thu Mar 26 2020 23:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38258 * 119.99912 * 2 1 4 4 C 1.38213 * 120.00170 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99552 * 359.69580 * 4 3 2 6 6 C 1.38214 * 120.00007 * 0.55547 * 5 4 3 7 7 C 1.50695 * 119.99665 * 179.74412 * 6 5 4 8 8 O 1.42904 * 109.46983 * 154.72350 * 7 6 5 9 9 Si 1.86302 * 109.47323 * 34.72694 * 7 6 5 10 10 H 1.48503 * 109.47125 * 299.99601 * 9 7 6 11 11 H 1.48497 * 109.47234 * 59.99845 * 9 7 6 12 12 H 1.48506 * 109.47261 * 180.02562 * 9 7 6 13 13 C 1.50698 * 109.47357 * 274.72442 * 7 6 5 14 14 O 1.21280 * 120.00185 * 240.00380 * 13 7 6 15 15 N 1.34781 * 120.00088 * 59.99790 * 13 7 6 16 16 C 1.46495 * 120.00057 * 180.02562 * 15 13 7 17 17 H 1.09001 * 109.57640 * 325.15993 * 16 15 13 18 18 C 1.53115 * 109.52368 * 85.32035 * 16 15 13 19 19 C 1.53034 * 109.27975 * 177.55970 * 18 16 15 20 20 N 1.46851 * 109.52219 * 300.81769 * 19 18 16 21 21 C 1.38588 * 111.00022 * 185.83546 * 20 19 18 22 22 C 1.39365 * 119.52929 * 55.79708 * 21 20 19 23 23 C 1.36889 * 119.38639 * 179.72028 * 22 21 20 24 24 C 1.40351 * 118.48594 * 359.97438 * 23 22 21 25 25 C 1.43198 * 120.48202 * 180.02562 * 24 23 22 26 26 N 9.39070 * 131.66511 * 227.08610 * 16 1 2 27 27 C 1.39580 * 119.03896 * 0.02562 * 24 23 22 28 28 N 1.31708 * 120.51614 * 0.02562 * 27 24 23 29 29 C 1.46855 * 111.19579 * 61.74531 * 20 19 18 30 30 C 1.53040 * 109.51967 * 298.25831 * 29 20 19 31 31 C 1.38214 * 120.00150 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47471 * 270.02407 * 1 2 3 33 33 H 1.09002 * 109.47318 * 30.02323 * 1 2 3 34 34 H 1.09005 * 109.47131 * 150.02936 * 1 2 3 35 35 H 1.07997 * 120.00033 * 359.96960 * 3 2 1 36 36 H 1.08002 * 120.00043 * 179.97438 * 4 3 2 37 37 H 1.08001 * 119.99393 * 180.29767 * 5 4 3 38 38 H 0.96994 * 119.99546 * 0.02562 * 15 13 7 39 39 H 1.09008 * 109.50407 * 297.49979 * 18 16 15 40 40 H 1.09002 * 109.50092 * 57.61773 * 18 16 15 41 41 H 1.08997 * 109.46212 * 180.80868 * 19 18 16 42 42 H 1.09000 * 109.46423 * 60.83491 * 19 18 16 43 43 H 1.08000 * 120.30454 * 359.69656 * 22 21 20 44 44 H 1.07998 * 120.75840 * 179.97438 * 23 22 21 45 45 H 1.08010 * 119.74337 * 180.02562 * 27 24 23 46 46 H 1.08995 * 109.46048 * 58.26839 * 29 20 19 47 47 H 1.08998 * 109.45898 * 178.24315 * 29 20 19 48 48 H 1.09001 * 109.50063 * 179.12185 * 30 29 20 49 49 H 1.09000 * 109.49776 * 299.19735 * 30 29 20 50 50 H 1.08003 * 119.99699 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2716 0.0000 0.0053 6 6 3.5806 -1.1969 0.0000 7 6 4.3341 -2.5019 0.0006 8 8 3.5149 -3.5248 0.5704 9 14 5.8907 -2.3199 1.0080 10 1 6.7421 -1.2570 0.4158 11 1 5.5375 -1.9517 2.4025 12 1 6.6336 -3.6058 1.0080 13 6 4.6925 -2.8757 -1.4147 14 8 4.2864 -3.9155 -1.8887 15 7 5.4644 -2.0543 -2.1537 16 6 5.8123 -2.4173 -3.5296 17 1 5.9371 -3.4978 -3.6019 18 6 4.6959 -1.9668 -4.4757 19 6 5.0923 -2.2939 -5.9171 20 7 6.3467 -1.6064 -6.2491 21 6 6.6666 -1.7753 -7.5870 22 6 5.7468 -1.4030 -8.5655 23 6 6.0681 -1.5657 -9.8861 24 6 7.3229 -2.1057 -10.2081 25 6 7.7034 -2.2939 -11.5758 26 7 8.0085 -2.4431 -12.6599 27 6 8.1946 -2.4565 -9.1760 28 7 7.8452 -2.2841 -7.9179 29 6 7.4446 -2.0579 -5.3845 30 6 7.1182 -1.7238 -3.9271 31 6 2.1981 -1.1970 0.0005 32 1 -0.3634 0.0004 1.0276 33 1 -0.3634 0.8898 -0.5142 34 1 -0.3634 -0.8903 -0.5134 35 1 1.6582 2.1326 -0.0005 36 1 4.1203 2.1328 -0.0010 37 1 5.3516 0.0001 0.0097 38 1 5.7894 -1.2228 -1.7745 39 1 3.7729 -2.4897 -4.2245 40 1 4.5450 -0.8920 -4.3747 41 1 4.3057 -1.9614 -6.5944 42 1 5.2296 -3.3703 -6.0207 43 1 4.7892 -0.9902 -8.2844 44 1 5.3719 -1.2851 -10.6626 45 1 9.1633 -2.8725 -9.4109 46 1 7.5708 -3.1353 -5.4906 47 1 8.3663 -1.5539 -5.6751 48 1 7.9261 -2.0730 -3.2841 49 1 7.0061 -0.6451 -3.8175 50 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931728085.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 23:33:31 Heat of formation + Delta-G solvation = 7.250940 kcal Electronic energy + Delta-G solvation = -34056.581708 eV Core-core repulsion = 29627.993888 eV Total energy + Delta-G solvation = -4428.587820 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 379.168 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.26171 -39.39789 -38.65784 -37.72314 -36.79103 -34.68473 -33.21921 -32.99595 -31.79623 -31.47136 -30.97228 -29.73003 -28.73215 -26.43165 -25.43982 -24.70512 -23.95883 -22.76803 -22.47010 -21.18235 -20.33034 -19.96896 -19.44216 -18.63350 -17.89396 -17.08882 -16.07092 -15.83914 -15.42705 -15.31381 -14.97026 -14.75419 -14.70182 -14.48360 -14.29498 -14.09152 -13.84883 -13.61938 -13.47168 -13.38744 -13.25346 -13.20384 -13.05454 -12.96106 -12.59291 -12.48284 -12.37377 -12.21967 -11.89302 -11.71589 -11.47281 -11.29399 -11.19652 -10.81902 -10.61799 -10.48456 -10.39921 -10.36613 -10.27415 -10.18972 -9.93984 -9.81566 -9.53573 -8.82333 -8.45818 -8.18800 -7.92150 -7.67740 -5.99752 -5.46675 0.20391 0.81265 2.11287 2.26882 2.27832 2.53189 3.11832 3.18773 3.31647 3.40078 3.46654 3.52859 3.89482 3.97009 4.05793 4.29457 4.48085 4.50943 4.67342 4.69810 4.79950 4.84904 5.06000 5.11790 5.22131 5.28472 5.38634 5.45307 5.45924 5.50665 5.56139 5.58763 5.68243 5.73534 5.76506 5.78200 5.85606 5.92387 6.02316 6.07104 6.09353 6.22218 6.24841 6.38839 6.45849 6.52134 6.55705 6.78179 6.83046 6.91984 6.96421 7.09202 7.22806 7.36916 7.44138 7.48989 7.71707 7.94019 8.51357 9.42235 9.97044 Molecular weight = 379.17amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.002076 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.958581 B =13483.224969 C =14391.625626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.103 4.103 3 C -0.147 4.147 4 C -0.123 4.123 5 C -0.160 4.160 6 C -0.054 4.054 7 C 0.024 3.976 8 O -0.811 6.811 9 Si 0.930 3.070 10 H -0.295 1.295 11 H -0.272 1.272 12 H -0.279 1.279 13 C 0.495 3.505 14 O -0.535 6.535 15 N -0.745 5.745 16 C 0.140 3.860 17 H 0.081 0.919 18 C -0.128 4.128 19 C 0.064 3.936 20 N -0.473 5.473 21 C 0.351 3.649 22 C -0.190 4.190 23 C -0.003 4.003 24 C -0.127 4.127 25 C 0.264 3.736 26 N -0.423 5.423 27 C 0.188 3.812 28 N -0.520 5.520 29 C 0.070 3.930 30 C -0.130 4.130 31 C -0.079 4.079 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.392 0.608 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.166 0.834 46 H 0.057 0.943 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 9.435 -14.412 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.103 4.103 3 C -0.165 4.165 4 C -0.141 4.141 5 C -0.178 4.178 6 C -0.056 4.056 7 C -0.079 4.079 8 O -0.755 6.755 9 Si 0.758 3.242 10 H -0.225 1.225 11 H -0.197 1.197 12 H -0.205 1.205 13 C 0.284 3.716 14 O -0.409 6.409 15 N -0.402 5.402 16 C 0.034 3.966 17 H 0.099 0.901 18 C -0.167 4.167 19 C -0.062 4.062 20 N -0.189 5.189 21 C 0.117 3.883 22 C -0.213 4.213 23 C -0.031 4.031 24 C -0.134 4.134 25 C -0.051 4.051 26 N -0.098 5.098 27 C 0.026 3.974 28 N -0.234 5.234 29 C -0.056 4.056 30 C -0.169 4.169 31 C -0.097 4.097 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.226 0.774 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.183 0.817 46 H 0.075 0.925 47 H 0.110 0.890 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.600 8.518 -14.890 18.046 hybrid contribution -0.480 0.245 -0.350 0.642 sum 5.121 8.763 -15.240 18.311 Atomic orbital electron populations 1.20706 0.92232 1.01827 1.01602 1.19958 0.95439 0.93606 1.01296 1.20731 0.94172 0.96631 1.04944 1.20870 0.94163 0.97147 1.01896 1.21197 0.99566 0.92769 1.04285 1.21415 0.95181 0.96067 0.92897 1.22544 1.02558 0.93016 0.89812 1.95076 1.60682 1.45364 1.74354 0.86625 0.78058 0.76560 0.82958 1.22479 1.19654 1.20485 1.23752 0.75254 0.83065 0.89481 1.90441 1.52479 1.25370 1.72647 1.46716 1.55621 1.25265 1.12598 1.20824 0.92561 0.99975 0.83258 0.90084 1.22056 1.00161 1.02831 0.91644 1.22342 0.88505 0.96640 0.98665 1.58861 1.06681 1.53513 0.99806 1.20197 0.89300 0.87926 0.90827 1.21301 1.02134 1.05935 0.91905 1.21183 0.93655 0.91466 0.96768 1.16864 0.98005 1.11919 0.86639 1.25398 0.93831 0.93497 0.92410 1.81287 1.07748 1.09288 1.11504 1.22746 0.97847 0.90876 0.85934 1.67856 1.18780 1.16575 1.20210 1.22017 0.92663 0.99992 0.90959 1.21993 0.97924 1.01969 0.94970 1.21011 0.94397 0.97007 0.97287 0.91884 0.92478 0.91862 0.87503 0.87256 0.86721 0.77396 0.89844 0.90581 0.89483 0.92758 0.83390 0.83784 0.81700 0.92492 0.89040 0.90168 0.90468 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 36.00 0.36 -1.25 16 2 C -0.10 -1.94 5.88 -104.63 -0.62 -2.56 16 3 C -0.15 -2.48 9.70 -39.58 -0.38 -2.86 16 4 C -0.12 -2.08 10.05 -39.58 -0.40 -2.48 16 5 C -0.16 -3.14 7.75 -39.58 -0.31 -3.45 16 6 C -0.05 -1.29 4.46 -104.63 -0.47 -1.76 16 7 C 0.02 0.67 0.72 -29.04 -0.02 0.65 16 8 O -0.81 -27.77 16.04 -55.14 -0.88 -28.65 16 9 Si 0.93 22.31 24.18 -169.99 -4.11 18.20 16 10 H -0.30 -5.76 6.36 56.52 0.36 -5.40 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 13 C 0.49 12.52 5.97 -10.98 -0.07 12.45 16 14 O -0.53 -15.53 16.16 -14.35 -0.23 -15.76 16 15 N -0.74 -14.25 4.60 -53.69 -0.25 -14.49 16 16 C 0.14 2.16 2.52 -67.81 -0.17 1.99 16 17 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 18 C -0.13 -1.75 5.67 -26.65 -0.15 -1.90 16 19 C 0.06 0.67 5.24 -3.83 -0.02 0.65 16 20 N -0.47 -4.83 4.67 -173.24 -0.81 -5.63 16 21 C 0.35 3.27 6.40 -155.19 -0.99 2.28 16 22 C -0.19 -1.36 9.11 -39.65 -0.36 -1.72 16 23 C 0.00 -0.02 9.85 -39.28 -0.39 -0.41 16 24 C -0.13 -0.90 5.75 -106.68 -0.61 -1.51 16 25 C 0.26 2.28 15.37 -22.47 -0.35 1.93 16 26 N -0.42 -4.68 18.54 41.84 0.78 -3.90 16 27 C 0.19 1.39 10.92 -17.10 -0.19 1.20 16 28 N -0.52 -4.87 8.64 -12.11 -0.10 -4.98 16 29 C 0.07 0.74 4.64 -3.83 -0.02 0.73 16 30 C -0.13 -1.53 5.57 -26.65 -0.15 -1.68 16 31 C -0.08 -1.84 9.01 -39.59 -0.36 -2.20 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.12 2.05 5.14 -52.49 -0.27 1.78 16 38 H 0.39 6.75 6.40 -40.82 -0.26 6.49 16 39 H 0.08 1.36 8.14 -51.92 -0.42 0.93 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 0.74 6.64 -51.93 -0.34 0.39 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.15 0.84 7.11 -52.49 -0.37 0.47 16 44 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 45 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 46 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 47 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 48 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.13 3.36 7.35 -52.48 -0.39 2.97 16 LS Contribution 411.25 15.07 6.20 6.20 Total: -1.00 -36.99 411.25 -11.82 -48.80 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.75 Total: 2.12 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -5.65 Total: -1.90 kcal Atomic # 7 Polarization: -28.62 SS G_CDS: -0.38 Total: -29.01 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -1.12 Total: -44.41 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.11 Total: 18.20 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.99 -11.82 -48.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931728085.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.053 kcal (2) G-P(sol) polarization free energy of solvation -36.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds