Wall clock time and date at job start Fri Mar 27 2020 00:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30831 * 125.90147 * 2 1 4 4 N 1.40085 * 108.20600 * 179.97438 * 3 2 1 5 5 C 1.46501 * 126.03889 * 180.02562 * 4 3 2 6 6 C 1.34955 * 107.92654 * 359.75834 * 4 3 2 7 7 C 1.50700 * 126.12902 * 180.23750 * 6 4 3 8 8 C 1.35317 * 107.74048 * 0.39258 * 6 4 3 9 9 C 1.50706 * 126.03709 * 179.87343 * 8 6 4 10 10 O 1.42902 * 109.46743 * 316.89659 * 9 8 6 11 11 Si 1.86296 * 109.47083 * 196.89843 * 9 8 6 12 12 H 1.48507 * 109.47019 * 296.00131 * 11 9 8 13 13 H 1.48493 * 109.47230 * 55.99872 * 11 9 8 14 14 H 1.48497 * 109.47092 * 176.00270 * 11 9 8 15 15 C 1.50698 * 109.46896 * 76.89680 * 9 8 6 16 16 O 1.21288 * 119.99693 * 235.12839 * 15 9 8 17 17 N 1.34767 * 120.00317 * 55.40456 * 15 9 8 18 18 C 1.39960 * 120.00268 * 185.46943 * 17 15 9 19 19 C 1.38991 * 120.08756 * 34.85434 * 18 17 15 20 20 C 1.38217 * 120.48785 * 180.09203 * 19 18 17 21 21 C 1.38141 * 120.15028 * 359.91744 * 20 19 18 22 22 C 1.39501 * 119.44662 * 359.95720 * 21 20 19 23 23 C 1.38767 * 120.65294 * 359.88692 * 22 21 20 24 Xx 1.57611 * 118.34108 * 180.28867 * 22 21 20 25 24 O 1.41996 * 122.03051 * 171.33213 * 24 22 21 26 25 O 1.43355 * 115.93803 * 351.35933 * 24 22 21 27 26 C 1.43321 * 111.34732 * 41.23694 * 26 24 22 28 27 C 1.52995 * 109.32589 * 174.09070 * 27 26 24 29 28 C 1.53001 * 109.32241 * 54.62061 * 27 26 24 30 29 C 1.50456 * 120.25946 * 179.77066 * 21 20 19 31 30 H 1.08993 * 109.47169 * 260.33660 * 1 2 3 32 31 H 1.08998 * 109.46791 * 20.33605 * 1 2 3 33 32 H 1.08998 * 109.47078 * 140.33280 * 1 2 3 34 33 H 1.09000 * 109.47427 * 90.02788 * 5 4 3 35 34 H 1.09001 * 109.47348 * 210.02228 * 5 4 3 36 35 H 1.09003 * 109.47072 * 330.02809 * 5 4 3 37 36 H 1.09000 * 109.46876 * 270.18270 * 7 6 4 38 37 H 1.08998 * 109.47347 * 30.17830 * 7 6 4 39 38 H 1.09001 * 109.46762 * 150.17887 * 7 6 4 40 39 H 0.97003 * 120.00017 * 5.47086 * 17 15 9 41 40 H 1.08003 * 119.76338 * 0.10709 * 19 18 17 42 41 H 1.08001 * 119.92863 * 179.97438 * 20 19 18 43 42 H 1.08004 * 120.28350 * 180.12291 * 23 22 21 44 43 H 0.96701 * 114.00464 * 180.02562 * 25 24 22 45 44 H 1.08999 * 109.47009 * 180.87943 * 28 27 26 46 45 H 1.09002 * 109.47280 * 300.88091 * 28 27 26 47 46 H 1.09005 * 109.47230 * 60.88080 * 28 27 26 48 47 H 1.09006 * 109.46936 * 299.12029 * 29 27 26 49 48 H 1.08993 * 109.47574 * 59.12417 * 29 27 26 50 49 H 1.09003 * 109.46479 * 179.12498 * 29 27 26 51 50 H 1.08997 * 109.13494 * 277.44778 * 30 21 20 52 51 H 1.08995 * 109.13381 * 36.63067 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7899 1.5006 0.0013 6 6 3.6142 -0.7156 0.0064 7 6 4.8349 -1.5991 0.0141 8 6 2.3270 -1.1331 0.0005 9 6 1.8597 -2.5659 0.0011 10 8 2.6521 -3.3257 -0.9137 11 14 0.0721 -2.6362 -0.5187 12 1 -0.7633 -1.9281 0.4844 13 1 -0.0844 -1.9829 -1.8429 14 1 -0.3609 -4.0536 -0.6116 15 6 2.0029 -3.1403 1.3870 16 8 2.6419 -4.1568 1.5590 17 7 1.4165 -2.5276 2.4343 18 6 1.6428 -2.9940 3.7344 19 6 2.8841 -3.5136 4.0820 20 6 3.1161 -3.9782 5.3630 21 6 2.1131 -3.9281 6.3115 22 6 0.8673 -3.4046 5.9652 23 6 0.6297 -2.9337 4.6816 24 8 -1.4870 -2.6770 6.8610 25 8 0.0406 -4.0310 8.2976 26 6 1.3964 -3.8052 8.7036 27 6 1.6207 -4.4226 10.0854 28 6 1.6588 -2.2996 8.7770 29 6 2.3613 -4.4379 7.7051 30 1 -0.3633 -0.1725 1.0130 31 1 -0.3633 0.9636 -0.3571 32 1 -0.3633 -0.7910 -0.6560 33 1 5.0827 1.7149 1.0292 34 1 5.6095 0.9982 -0.5125 35 1 4.5565 2.4334 -0.5120 36 1 5.1345 -1.8139 -1.0117 37 1 5.6485 -1.0904 0.5311 38 1 4.6048 -2.5322 0.5284 39 1 0.8374 -1.7634 2.2872 40 1 3.6735 -3.5544 3.3460 41 1 4.0840 -4.3805 5.6232 42 1 -0.3365 -2.5277 4.4205 43 1 -2.0915 -2.7188 7.6147 44 1 2.6469 -4.2386 10.4033 45 1 0.9324 -3.9722 10.8006 46 1 1.4425 -5.4968 10.0366 47 1 1.5079 -1.8561 7.7928 48 1 0.9708 -1.8452 9.4898 49 1 2.6850 -2.1251 9.1007 50 1 2.2305 -5.5199 7.7183 51 1 3.3838 -4.1980 7.9964 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584918876.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 00:10:10 Heat of formation + Delta-G solvation = 116.979396 kcal Electronic energy + Delta-G solvation = -35533.245860 eV Core-core repulsion = 30908.500432 eV Total energy + Delta-G solvation = -4624.745428 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.180 amu Computer time = 9.85 seconds Orbital eigenvalues (eV) -42.33438 -41.65439 -40.03144 -38.20933 -35.87542 -35.36208 -34.23313 -32.74791 -32.45435 -32.04255 -31.60509 -31.31110 -30.79255 -28.50294 -28.28735 -27.46906 -26.46515 -25.16794 -24.08317 -22.82343 -21.59452 -20.49638 -20.30848 -19.99046 -18.54332 -17.74475 -17.60736 -17.16486 -16.81326 -16.44166 -16.24837 -16.04973 -15.69616 -15.46120 -15.37013 -14.98308 -14.95898 -14.74875 -14.63507 -14.46206 -14.42579 -14.22483 -13.88553 -13.77202 -13.48042 -13.39914 -13.34290 -13.11447 -13.05517 -12.89685 -12.85312 -12.73263 -12.71960 -12.57634 -12.38610 -12.04016 -11.96987 -11.54438 -11.46416 -11.02035 -10.89537 -10.76058 -10.64689 -10.56843 -9.85275 -9.72208 -9.39325 -9.04112 -8.28452 -7.70349 -6.50880 -2.78929 -0.42718 -0.32613 0.96844 1.21607 1.31463 1.41149 1.65993 1.76278 1.92784 2.03299 2.22204 2.58404 3.05635 3.25112 3.51290 3.56632 3.66779 3.73415 3.89206 3.91021 3.97447 4.08180 4.17342 4.23535 4.28992 4.31978 4.45383 4.46046 4.53163 4.60049 4.61941 4.62630 4.66067 4.66659 4.72443 4.79802 4.82390 4.84080 4.89212 4.93565 4.96081 4.98372 5.07377 5.09675 5.21110 5.22981 5.28881 5.50539 5.59585 5.67784 5.84539 6.31440 6.33095 6.73339 6.84798 7.20115 7.83598 Molecular weight = 375.18amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.002792 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.953980 B =10024.961169 C =10347.862744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.049 3.951 3 N -0.314 5.314 4 N -0.381 5.381 5 C 0.095 3.905 6 C 0.093 3.907 7 C -0.058 4.058 8 C -0.247 4.247 9 C 0.040 3.960 10 O -0.872 6.872 11 Si 0.945 3.055 12 H -0.214 1.214 13 H -0.281 1.281 14 H -0.325 1.325 15 C 0.498 3.502 16 O -0.544 6.544 17 N -0.670 5.670 18 C 0.193 3.807 19 C -0.121 4.121 20 C -0.025 4.025 21 C -0.096 4.096 22 C 0.268 3.732 23 C -0.158 4.158 24 O -0.771 6.771 25 O -0.433 6.433 26 C 0.071 3.929 27 C -0.115 4.115 28 C -0.155 4.155 29 C -0.089 4.089 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.418 0.582 40 H 0.153 0.847 41 H 0.221 0.779 42 H 0.165 0.835 43 H 0.318 0.682 44 H 0.114 0.886 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.037 0.963 48 H 0.048 0.952 49 H 0.101 0.899 50 H 0.106 0.894 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.654 5.474 15.265 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 N -0.137 5.137 4 N -0.166 5.166 5 C -0.044 4.044 6 C -0.033 4.033 7 C -0.117 4.117 8 C -0.259 4.259 9 C -0.063 4.063 10 O -0.817 6.817 11 Si 0.776 3.224 12 H -0.139 1.139 13 H -0.208 1.208 14 H -0.256 1.256 15 C 0.290 3.710 16 O -0.419 6.419 17 N -0.320 5.320 18 C 0.096 3.904 19 C -0.141 4.141 20 C -0.042 4.042 21 C -0.098 4.098 22 C 0.257 3.743 23 C -0.179 4.179 24 O -0.597 6.597 25 O -0.377 6.377 26 C 0.023 3.977 27 C -0.171 4.171 28 C -0.213 4.213 29 C -0.126 4.126 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.256 0.744 40 H 0.170 0.830 41 H 0.237 0.763 42 H 0.182 0.818 43 H 0.150 0.850 44 H 0.132 0.868 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.068 0.932 49 H 0.120 0.880 50 H 0.124 0.876 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.876 5.980 14.159 18.269 hybrid contribution -1.727 -0.498 0.120 1.802 sum 8.148 5.482 14.279 17.330 Atomic orbital electron populations 1.21049 0.86452 1.04268 1.03906 1.22367 0.97348 0.90536 1.01369 1.77005 0.87200 1.22244 1.27300 1.48618 1.05747 1.04109 1.58080 1.22120 0.83122 0.94624 1.04552 1.20968 0.97682 0.84288 1.00401 1.20124 0.91926 0.97106 1.02516 1.20890 0.92962 0.96713 1.15341 1.22165 1.06918 0.89082 0.88125 1.95007 1.65443 1.67909 1.53386 0.86913 0.78494 0.74930 0.82047 1.13866 1.20795 1.25594 1.24397 0.75708 0.83244 0.87601 1.90436 1.40919 1.25264 1.85298 1.44460 1.50836 1.33959 1.02757 1.17771 0.90716 0.97666 0.84232 1.21777 0.95622 0.98525 0.98212 1.21406 0.98161 0.96755 0.87882 1.20715 0.86282 1.01878 1.00887 1.29422 0.67430 1.04250 0.73159 1.21075 1.01597 1.06307 0.88900 1.93530 1.43471 1.84835 1.37891 1.95105 1.24033 1.76210 1.42387 1.22116 0.86861 0.94628 0.94084 1.22292 1.04219 1.00922 0.89706 1.22511 1.03381 0.94051 1.01319 1.21547 1.03081 1.02385 0.85555 0.87599 0.88176 0.92349 0.89212 0.88095 0.88535 0.91810 0.89115 0.92195 0.74383 0.82990 0.76273 0.81814 0.85005 0.86782 0.92261 0.91203 0.94407 0.93237 0.88027 0.87616 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 119. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.23 8.18 71.24 0.58 -2.65 16 2 C 0.05 1.95 6.97 43.10 0.30 2.25 16 3 N -0.31 -11.92 12.58 -47.39 -0.60 -12.51 16 4 N -0.38 -13.33 4.01 -356.02 -1.43 -14.76 16 5 C 0.10 2.08 11.09 127.77 1.42 3.49 16 6 C 0.09 3.87 6.87 41.40 0.28 4.16 16 7 C -0.06 -2.22 8.90 71.24 0.63 -1.58 16 8 C -0.25 -11.34 4.39 -20.14 -0.09 -11.43 16 9 C 0.04 2.10 0.46 29.10 0.01 2.11 16 10 O -0.87 -57.85 15.80 -129.99 -2.05 -59.90 16 11 Si 0.95 44.24 21.47 68.60 1.47 45.71 16 12 H -0.21 -7.40 5.29 99.48 0.53 -6.88 16 13 H -0.28 -13.37 6.81 99.48 0.68 -12.70 16 14 H -0.33 -17.06 7.11 99.48 0.71 -16.36 16 15 C 0.50 23.65 5.27 87.66 0.46 24.11 16 16 O -0.54 -28.64 14.32 15.94 0.23 -28.41 16 17 N -0.67 -24.92 4.90 -303.43 -1.49 -26.41 16 18 C 0.19 6.17 6.25 38.16 0.24 6.41 16 19 C -0.12 -3.28 8.64 22.45 0.19 -3.08 16 20 C -0.02 -0.42 9.72 22.24 0.22 -0.21 16 21 C -0.10 -2.00 5.24 -19.66 -0.10 -2.11 16 22 C 0.27 8.19 8.12 22.70 0.18 8.38 16 23 C -0.16 -4.97 9.79 22.54 0.22 -4.75 16 24 O -0.77 -35.96 17.84 -127.95 -2.28 -38.24 16 25 O -0.43 -15.25 13.61 -127.95 -1.74 -16.99 16 26 C 0.07 1.53 1.09 -10.93 -0.01 1.52 16 27 C -0.11 -1.61 8.81 71.98 0.63 -0.97 16 28 C -0.16 -3.18 8.56 71.98 0.62 -2.57 16 29 C -0.09 -1.32 4.67 29.63 0.14 -1.18 16 30 H 0.11 2.84 7.29 -2.39 -0.02 2.82 16 31 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.06 2.10 2.65 -2.39 -0.01 2.09 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.10 1.81 7.68 -2.39 -0.02 1.79 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.09 2.46 7.74 -2.39 -0.02 2.44 16 38 H 0.06 2.71 7.13 -2.39 -0.02 2.70 16 39 H 0.42 13.88 7.87 -92.71 -0.73 13.15 16 40 H 0.15 4.65 6.54 -2.91 -0.02 4.63 16 41 H 0.22 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.16 5.33 8.01 -2.91 -0.02 5.31 16 43 H 0.32 13.77 9.26 -74.06 -0.69 13.09 16 44 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.04 0.95 6.39 -2.38 -0.02 0.94 16 48 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.15 0.73 8.12 -2.39 -0.02 0.71 16 Total: -1.00 -97.79 414.93 -1.83 -99.63 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.12 Total: 30.01 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 5.93 Total: 21.89 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -3.51 Total: -53.69 kcal Atomic # 8 Polarization: -137.69 SS G_CDS: -5.85 Total: -143.54 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.47 Total: 45.71 kcal Total: -97.79 -1.83 -99.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584918876.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.606 kcal (2) G-P(sol) polarization free energy of solvation -97.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.85 seconds