Wall clock time and date at job start Fri Mar 27 2020 06:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46807 * 2 1 4 4 C 1.52998 * 109.46811 * 240.00750 * 2 1 3 5 5 N 1.46500 * 109.47325 * 120.00241 * 2 1 3 6 6 C 1.34947 * 126.03229 * 75.25919 * 5 2 1 7 7 C 1.35320 * 107.74004 * 180.14959 * 6 5 2 8 8 C 1.50702 * 126.04031 * 179.87744 * 7 6 5 9 9 O 1.42903 * 109.46626 * 334.71176 * 8 7 6 10 10 Si 1.86298 * 109.47186 * 214.71296 * 8 7 6 11 11 H 1.48498 * 109.47146 * 59.99471 * 10 8 7 12 12 H 1.48499 * 109.46959 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47028 * 299.99909 * 10 8 7 14 14 C 1.50703 * 109.47013 * 94.70955 * 8 7 6 15 15 O 1.21288 * 119.99624 * 239.99912 * 14 8 7 16 16 N 1.34773 * 120.00249 * 60.00463 * 14 8 7 17 17 C 1.39944 * 120.00387 * 175.37443 * 16 14 8 18 18 C 1.39000 * 120.09397 * 214.79229 * 17 16 14 19 19 C 1.38220 * 120.49003 * 179.84569 * 18 17 16 20 20 C 1.38132 * 120.14790 * 0.53781 * 19 18 17 21 21 C 1.39491 * 119.44791 * 359.60151 * 20 19 18 22 22 C 1.38770 * 120.65864 * 0.15873 * 21 20 19 23 Xx 1.57618 * 118.34114 * 180.32138 * 21 20 19 24 23 O 1.42005 * 122.03176 * 171.35199 * 23 21 20 25 24 O 1.43351 * 115.94043 * 351.37747 * 23 21 20 26 25 C 1.43316 * 111.34189 * 41.23943 * 25 23 21 27 26 C 1.53004 * 109.32600 * 54.60549 * 26 25 23 28 27 C 1.52998 * 109.33044 * 174.08404 * 26 25 23 29 28 C 1.50457 * 120.25996 * 179.47419 * 20 19 18 30 29 C 1.39869 * 107.92008 * 359.60740 * 7 6 5 31 30 N 1.30844 * 108.20491 * 0.24589 * 30 7 6 32 31 H 1.09007 * 109.46925 * 299.99711 * 1 2 3 33 32 H 1.08999 * 109.47774 * 59.99454 * 1 2 3 34 33 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 35 34 H 1.08998 * 109.46730 * 180.02562 * 3 2 1 36 35 H 1.08993 * 109.47515 * 300.00348 * 3 2 1 37 36 H 1.09007 * 109.47142 * 60.00422 * 3 2 1 38 37 H 1.09000 * 109.46590 * 299.99519 * 4 2 1 39 38 H 1.09000 * 109.47771 * 59.99765 * 4 2 1 40 39 H 1.08998 * 109.46956 * 180.02562 * 4 2 1 41 40 H 1.07991 * 126.13292 * 359.97438 * 6 5 2 42 41 H 0.97003 * 119.99825 * 355.37618 * 16 14 8 43 42 H 1.08002 * 119.75374 * 0.10209 * 18 17 16 44 43 H 1.08006 * 119.92234 * 180.29160 * 19 18 17 45 44 H 1.07994 * 120.28309 * 179.97438 * 22 21 20 46 45 H 0.96699 * 114.00494 * 179.97438 * 24 23 21 47 46 H 1.08993 * 109.47400 * 60.00424 * 27 26 25 48 47 H 1.09006 * 109.46901 * 180.02562 * 27 26 25 49 48 H 1.08998 * 109.47202 * 299.99748 * 27 26 25 50 49 H 1.08995 * 109.47490 * 59.99899 * 28 26 25 51 50 H 1.09003 * 109.47264 * 179.97438 * 28 26 25 52 51 H 1.09000 * 109.46842 * 299.99587 * 28 26 25 53 52 H 1.08996 * 109.14039 * 36.52200 * 29 20 19 54 53 H 1.08998 * 109.08715 * 277.36931 * 29 20 19 55 54 H 1.08002 * 125.89838 * 180.26450 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 2.0212 -2.0251 1.3967 7 6 2.5483 -2.2569 2.6213 8 6 2.7422 -3.6071 3.2621 9 8 1.8054 -4.5348 2.7108 10 14 2.4697 -3.4672 5.0997 11 1 1.0881 -2.9893 5.3603 12 1 2.6601 -4.7978 5.7310 13 1 3.4432 -2.5031 5.6724 14 6 4.1443 -4.0920 2.9975 15 8 4.3237 -5.1300 2.3962 16 7 5.1990 -3.3724 3.4292 17 6 6.4975 -3.8691 3.2695 18 6 7.4657 -3.6114 4.2330 19 6 8.7499 -4.1006 4.0852 20 6 9.0854 -4.8428 2.9696 21 6 8.1160 -5.1002 2.0002 22 6 6.8238 -4.6158 2.1456 23 8 7.5670 -6.4174 -0.1996 24 8 9.9234 -6.2414 0.6048 25 6 10.5138 -6.5740 1.8677 26 6 9.7317 -7.7244 2.5049 27 6 11.9635 -7.0117 1.6494 28 6 10.4857 -5.3666 2.8004 29 6 2.8872 -1.0224 3.1846 30 7 2.5699 -0.0827 2.3312 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 1.6766 -1.7487 -1.2493 38 1 1.6766 -0.2072 -2.1393 39 1 3.1299 -0.7215 -1.2491 40 1 1.6640 -2.7738 0.7052 41 1 5.0579 -2.5101 3.8505 42 1 7.2115 -3.0280 5.1056 43 1 9.4937 -3.8988 4.8418 44 1 6.0781 -4.8184 1.3911 45 1 7.9451 -6.9312 -0.9263 46 1 9.7633 -8.5933 1.8476 47 1 10.1786 -7.9791 3.4660 48 1 8.6960 -7.4201 2.6555 49 1 12.5232 -6.1980 1.1884 50 1 12.4150 -7.2649 2.6087 51 1 11.9852 -7.8837 0.9959 52 1 10.8783 -5.6583 3.7745 53 1 11.1131 -4.5786 2.3838 54 1 3.3340 -0.8709 4.1562 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584919578.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 06:25:20 Heat of formation + Delta-G solvation = 91.367140 kcal Electronic energy + Delta-G solvation = -37200.909225 eV Core-core repulsion = 32419.515548 eV Total energy + Delta-G solvation = -4781.393678 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.196 amu Computer time = 10.44 seconds Orbital eigenvalues (eV) -42.27525 -41.70240 -40.09685 -38.26856 -37.72678 -35.85546 -34.08479 -32.73221 -32.40281 -32.05007 -31.53751 -31.34077 -30.11458 -28.43632 -28.37615 -28.29418 -27.76042 -25.85219 -24.15559 -23.48814 -22.77017 -21.74233 -20.60519 -20.28876 -20.08769 -18.47628 -18.00345 -17.44430 -17.18844 -16.81383 -16.27438 -16.12828 -15.96046 -15.74034 -15.46344 -15.39323 -15.24473 -14.99003 -14.96386 -14.83959 -14.60297 -14.36431 -14.29942 -13.82342 -13.74264 -13.52001 -13.42128 -13.25567 -13.20472 -13.19509 -13.07556 -12.91436 -12.80984 -12.79290 -12.63632 -12.43026 -12.33434 -12.24458 -12.15801 -11.97890 -11.81441 -11.58230 -11.34261 -11.00706 -10.80264 -10.70734 -10.55756 -10.18445 -9.75790 -9.43410 -9.16693 -8.38152 -7.75246 -6.56198 -2.71473 -0.47022 -0.28376 1.01786 1.27247 1.34144 1.51862 1.65428 1.71706 1.96710 2.12065 2.27893 2.67007 2.98775 3.22169 3.45469 3.47481 3.66093 3.74773 3.75236 3.87230 3.87454 4.01718 4.03387 4.08240 4.11445 4.21987 4.39589 4.48054 4.50996 4.58004 4.59930 4.62693 4.64600 4.69492 4.72074 4.73025 4.73457 4.79286 4.80640 4.84378 4.87841 4.90832 4.93084 4.99173 5.01512 5.12945 5.17083 5.20186 5.23966 5.28408 5.51033 5.53896 5.64889 5.88911 6.24590 6.40030 6.76589 6.85576 7.25697 7.87263 Molecular weight = 389.20amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.002441 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.593816 B =11469.879628 C =12431.104768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 C -0.129 4.129 4 C -0.157 4.157 5 N -0.366 5.366 6 C 0.060 3.940 7 C -0.243 4.243 8 C 0.009 3.991 9 O -0.904 6.904 10 Si 0.972 3.028 11 H -0.285 1.285 12 H -0.306 1.306 13 H -0.179 1.179 14 C 0.483 3.517 15 O -0.569 6.569 16 N -0.661 5.661 17 C 0.186 3.814 18 C -0.110 4.110 19 C -0.016 4.016 20 C -0.094 4.094 21 C 0.269 3.731 22 C -0.168 4.168 23 O -0.827 6.827 24 O -0.435 6.435 25 C 0.064 3.936 26 C -0.156 4.156 27 C -0.110 4.110 28 C -0.088 4.088 29 C 0.026 3.974 30 N -0.296 5.296 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.114 0.886 39 H 0.051 0.949 40 H 0.135 0.865 41 H 0.433 0.567 42 H 0.218 0.782 43 H 0.249 0.751 44 H 0.121 0.879 45 H 0.304 0.696 46 H 0.041 0.959 47 H 0.113 0.887 48 H 0.024 0.976 49 H 0.074 0.926 50 H 0.122 0.878 51 H 0.052 0.948 52 H 0.158 0.842 53 H 0.117 0.883 54 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.190 14.793 11.181 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.085 3.915 3 C -0.186 4.186 4 C -0.215 4.215 5 N -0.151 5.151 6 C -0.085 4.085 7 C -0.255 4.255 8 C -0.091 4.091 9 O -0.850 6.850 10 Si 0.794 3.206 11 H -0.211 1.211 12 H -0.234 1.234 13 H -0.102 1.102 14 C 0.275 3.725 15 O -0.446 6.446 16 N -0.313 5.313 17 C 0.089 3.911 18 C -0.130 4.130 19 C -0.033 4.033 20 C -0.096 4.096 21 C 0.259 3.741 22 C -0.189 4.189 23 O -0.653 6.653 24 O -0.381 6.381 25 C 0.015 3.985 26 C -0.213 4.213 27 C -0.167 4.167 28 C -0.124 4.124 29 C -0.159 4.159 30 N -0.117 5.117 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.153 0.847 41 H 0.274 0.726 42 H 0.235 0.765 43 H 0.265 0.735 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.060 0.940 47 H 0.131 0.869 48 H 0.043 0.957 49 H 0.093 0.907 50 H 0.141 0.859 51 H 0.071 0.929 52 H 0.176 0.824 53 H 0.135 0.865 54 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 17.360 15.762 11.465 26.101 hybrid contribution -1.187 -3.013 -2.951 4.381 sum 16.173 12.749 8.513 22.284 Atomic orbital electron populations 1.22233 0.92313 1.02290 1.04268 1.21094 0.95158 0.94539 0.80756 1.21832 1.01351 0.91383 1.04048 1.22242 1.01390 1.00581 0.97287 1.49073 1.48229 1.03252 1.14583 1.21855 1.01756 0.85923 0.98979 1.21251 1.10462 0.96873 0.96958 1.23012 0.87063 0.90389 1.08681 1.94996 1.52552 1.56715 1.80722 0.85993 0.81481 0.78458 0.74676 1.21130 1.23358 1.10227 1.24823 0.89337 0.83249 0.75060 1.90527 1.86234 1.27364 1.40427 1.44220 1.02112 1.23658 1.61312 1.18039 0.87619 0.95981 0.89485 1.22140 0.91504 1.01200 0.98117 1.21793 0.97379 0.91447 0.92717 1.21064 0.97780 1.01487 0.89251 1.29402 0.93123 0.89083 0.62495 1.21419 0.95452 1.02037 0.99971 1.93636 1.48140 1.76765 1.46738 1.95155 1.29490 1.90242 1.23176 1.22318 0.93640 0.94486 0.88017 1.22557 0.98765 0.97936 1.02033 1.22327 0.87432 1.01843 1.05112 1.21571 0.89750 0.97484 1.03579 1.24219 1.01799 0.89044 1.00862 1.76982 1.18140 1.22083 0.94534 0.92265 0.87126 0.93933 0.92726 0.87942 0.91574 0.93788 0.86715 0.93012 0.84735 0.72566 0.76510 0.73467 0.86125 0.86519 0.94008 0.86874 0.95716 0.90656 0.85939 0.92908 0.82421 0.86546 0.76352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 85. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 8.73 71.98 0.63 -3.24 16 2 C 0.17 4.73 1.24 3.60 0.00 4.73 16 3 C -0.13 -2.83 8.09 71.98 0.58 -2.25 16 4 C -0.16 -4.27 8.29 71.98 0.60 -3.68 16 5 N -0.37 -13.94 3.43 -307.84 -1.06 -15.00 16 6 C 0.06 2.90 10.02 83.54 0.84 3.74 16 7 C -0.24 -11.58 4.40 -20.14 -0.09 -11.67 16 8 C 0.01 0.49 0.78 29.10 0.02 0.51 16 9 O -0.90 -66.96 16.76 -129.94 -2.18 -69.14 16 10 Si 0.97 41.86 24.77 68.60 1.70 43.56 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.31 -14.59 7.11 99.48 0.71 -13.89 16 13 H -0.18 -4.52 6.83 99.48 0.68 -3.84 16 14 C 0.48 25.51 5.85 87.66 0.51 26.03 16 15 O -0.57 -37.27 13.94 15.98 0.22 -37.05 16 16 N -0.66 -23.77 4.82 -303.43 -1.46 -25.23 16 17 C 0.19 5.80 6.30 38.17 0.24 6.04 16 18 C -0.11 -1.54 9.95 22.45 0.22 -1.31 16 19 C -0.02 -0.14 9.72 22.24 0.22 0.08 16 20 C -0.09 -1.88 5.26 -19.66 -0.10 -1.98 16 21 C 0.27 10.05 8.11 22.70 0.18 10.23 16 22 C -0.17 -7.19 8.52 22.54 0.19 -7.00 16 23 O -0.83 -52.40 17.84 -127.95 -2.28 -54.68 16 24 O -0.44 -18.02 13.61 -127.95 -1.74 -19.76 16 25 C 0.06 1.56 1.09 -10.93 -0.01 1.55 16 26 C -0.16 -4.06 8.55 71.98 0.62 -3.44 16 27 C -0.11 -1.70 8.81 71.98 0.63 -1.07 16 28 C -0.09 -1.18 4.67 29.64 0.14 -1.04 16 29 C 0.03 0.94 9.88 85.23 0.84 1.78 16 30 N -0.30 -10.67 11.66 -57.02 -0.66 -11.34 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.52 8.04 -2.38 -0.02 1.50 16 37 H 0.04 1.40 7.36 -2.39 -0.02 1.38 16 38 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.14 7.27 7.53 -2.92 -0.02 7.25 16 41 H 0.43 11.28 7.31 -92.71 -0.68 10.60 16 42 H 0.22 0.62 8.06 -2.91 -0.02 0.59 16 43 H 0.25 -1.51 8.06 -2.91 -0.02 -1.54 16 44 H 0.12 7.01 6.19 -2.91 -0.02 6.99 16 45 H 0.30 17.88 9.26 -74.06 -0.69 17.19 16 46 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 48 H 0.02 0.82 6.41 -2.39 -0.02 0.81 16 49 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.16 0.26 8.12 -2.39 -0.02 0.24 16 53 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 54 H 0.22 5.40 7.00 -2.91 -0.02 5.38 16 Total: -1.00 -131.52 445.30 -0.90 -132.42 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.30 Total: 38.19 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 6.27 Total: 18.02 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -3.18 Total: -51.57 kcal Atomic # 8 Polarization: -174.65 SS G_CDS: -5.98 Total: -180.63 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.70 Total: 43.56 kcal Total: -131.52 -0.90 -132.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584919578.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.790 kcal (2) G-P(sol) polarization free energy of solvation -131.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -132.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.44 seconds