Wall clock time and date at job start Thu Mar 26 2020 22:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 117.00437 * 2 1 4 4 C 1.38751 * 120.05265 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94782 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.04977 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11541 * 359.75575 * 6 5 4 8 8 C 1.38169 * 120.05188 * 0.50137 * 7 6 5 9 9 C 1.50703 * 120.02698 * 179.77021 * 8 7 6 10 10 O 1.42894 * 109.47390 * 239.72535 * 9 8 7 11 11 Si 1.86297 * 109.47154 * 119.72299 * 9 8 7 12 12 H 1.48497 * 109.47149 * 180.02562 * 11 9 8 13 13 H 1.48507 * 109.47348 * 300.00027 * 11 9 8 14 14 H 1.48494 * 109.46953 * 59.99929 * 11 9 8 15 15 C 1.50709 * 109.46937 * 359.72415 * 9 8 7 16 16 O 1.21279 * 120.00025 * 239.99683 * 15 9 8 17 17 N 1.34775 * 119.99980 * 60.00258 * 15 9 8 18 18 C 1.39949 * 119.99885 * 175.42020 * 17 15 9 19 19 C 1.39003 * 120.08747 * 215.08449 * 18 17 15 20 20 C 1.38218 * 120.48454 * 180.02562 * 19 18 17 21 21 C 1.38129 * 120.15281 * 359.92173 * 20 19 18 22 22 C 1.39493 * 119.44938 * 359.97269 * 21 20 19 23 23 C 1.38775 * 120.65310 * 359.86861 * 22 21 20 24 Xx 1.57614 * 118.34521 * 180.29341 * 22 21 20 25 24 O 1.42004 * 122.03104 * 171.37971 * 24 22 21 26 25 O 1.43353 * 115.93571 * 351.35749 * 24 22 21 27 26 C 1.43315 * 111.34577 * 41.24107 * 26 24 22 28 27 C 1.53002 * 109.32652 * 174.08639 * 27 26 24 29 28 C 1.53006 * 109.32490 * 54.61836 * 27 26 24 30 29 C 1.50461 * 120.26186 * 179.79274 * 21 20 19 31 30 H 1.09000 * 109.46774 * 180.02562 * 1 2 3 32 31 H 1.09000 * 109.46957 * 299.99916 * 1 2 3 33 32 H 1.08996 * 109.47200 * 59.99820 * 1 2 3 34 33 H 1.08005 * 120.02685 * 0.02562 * 4 3 2 35 34 H 1.07996 * 119.97746 * 179.97438 * 5 4 3 36 35 H 1.08003 * 119.94024 * 179.97438 * 6 5 4 37 36 H 1.08003 * 119.97224 * 180.24953 * 7 6 5 38 37 H 0.97001 * 120.00189 * 355.41466 * 17 15 9 39 38 H 1.07992 * 119.76036 * 0.08538 * 19 18 17 40 39 H 1.08004 * 119.92445 * 179.97438 * 20 19 18 41 40 H 1.07997 * 120.28248 * 180.13664 * 23 22 21 42 41 H 0.96709 * 113.99540 * 179.97438 * 25 24 22 43 42 H 1.09003 * 109.46440 * 180.87744 * 28 27 26 44 43 H 1.08996 * 109.47412 * 300.87979 * 28 27 26 45 44 H 1.09002 * 109.46801 * 60.87836 * 28 27 26 46 45 H 1.09005 * 109.47014 * 299.12281 * 29 27 26 47 46 H 1.08994 * 109.47110 * 59.12173 * 29 27 26 48 47 H 1.09000 * 109.47039 * 179.12410 * 29 27 26 49 48 H 1.08996 * 109.13672 * 277.44490 * 30 21 20 50 49 H 1.08999 * 109.13189 * 36.62755 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0561 2.5171 0.0067 8 6 3.4311 1.2848 0.0008 9 6 4.2537 0.0221 0.0011 10 8 3.9498 -0.7448 -1.1656 11 14 3.8564 -0.9775 1.5222 12 1 4.6674 -2.2215 1.5228 13 1 4.1724 -0.1806 2.7348 14 1 2.4132 -1.3270 1.5218 15 6 5.7185 0.3768 0.0016 16 8 6.4318 0.0090 -0.9077 17 7 6.2358 1.1026 1.0126 18 6 7.6122 1.3506 1.0630 19 6 8.2655 1.4076 2.2886 20 6 9.6245 1.6526 2.3480 21 6 10.3469 1.8418 1.1860 22 6 9.6935 1.7828 -0.0450 23 6 8.3298 1.5340 -0.1110 24 8 10.0022 1.7759 -2.6488 25 8 11.8980 2.4246 -1.1602 26 6 12.5107 1.7367 -0.0623 27 6 13.9905 2.1183 0.0121 28 6 12.3912 0.2270 -0.2806 29 6 11.8255 2.1133 1.2480 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.2129 2.3203 0.0014 34 1 1.3341 4.5114 0.0011 35 1 3.7923 4.6380 0.0016 36 1 5.1345 2.5752 0.0112 37 1 5.6541 1.4531 1.7052 38 1 7.7074 1.2584 3.2010 39 1 10.1229 1.6954 3.3052 40 1 7.8304 1.4874 -1.0674 41 1 10.6255 1.9416 -3.3695 42 1 14.4623 1.5843 0.8370 43 1 14.4823 1.8503 -0.9229 44 1 14.0809 3.1922 0.1754 45 1 11.3383 -0.0512 -0.3266 46 1 12.8800 -0.0445 -1.2162 47 1 12.8702 -0.2986 0.5455 48 1 11.9863 3.1734 1.4435 49 1 12.2620 1.5303 2.0590 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584922585.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 22:22:45 Heat of formation + Delta-G solvation = 21.786077 kcal Electronic energy + Delta-G solvation = -34551.612371 eV Core-core repulsion = 29917.757778 eV Total energy + Delta-G solvation = -4633.854593 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.158 amu Computer time = 11.69 seconds Orbital eigenvalues (eV) -42.05974 -40.98942 -40.12710 -38.31436 -38.07878 -35.94613 -34.45878 -32.76258 -32.41864 -32.07116 -31.50042 -31.07394 -30.62294 -28.38604 -28.22985 -27.65840 -25.97804 -24.19259 -23.53189 -22.73401 -22.32346 -21.05126 -20.30858 -18.92965 -18.49889 -17.90491 -17.35719 -17.07421 -16.70678 -16.54376 -16.51397 -16.24269 -15.71640 -15.58135 -15.41060 -15.24347 -15.07271 -14.98208 -14.80354 -14.55825 -14.38063 -14.13013 -13.84862 -13.75795 -13.47168 -13.42274 -13.22931 -12.94341 -12.85614 -12.81194 -12.63973 -12.53292 -12.43544 -12.37572 -12.16596 -11.91968 -11.70096 -11.58410 -11.52389 -10.87178 -10.81410 -10.70973 -10.56313 -9.76660 -9.67739 -9.43654 -8.91804 -8.33831 -7.80923 -6.56113 -2.72770 -0.49046 -0.30503 0.48679 0.64296 1.19775 1.32048 1.56517 1.67853 1.97648 2.17206 2.54285 2.71418 2.97567 3.00339 3.20460 3.42192 3.63951 3.73570 3.86716 3.99273 4.00261 4.02723 4.04818 4.21173 4.31645 4.34148 4.37739 4.43199 4.47816 4.59128 4.60401 4.62228 4.69146 4.70768 4.71663 4.73850 4.78827 4.85544 4.86460 4.90261 4.96660 5.09740 5.19110 5.21719 5.23622 5.45562 5.56192 5.59034 5.64337 5.72330 6.05651 6.30385 6.75937 6.76034 7.14919 7.78600 Molecular weight = 373.16amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.002564 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.602599 B =10917.683440 C =11123.906879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.109 3.891 4 C -0.206 4.206 5 C -0.093 4.093 6 C -0.152 4.152 7 C -0.126 4.126 8 C -0.128 4.128 9 C -0.011 4.011 10 O -0.887 6.887 11 Si 0.960 3.040 12 H -0.308 1.308 13 H -0.213 1.213 14 H -0.248 1.248 15 C 0.480 3.520 16 O -0.563 6.563 17 N -0.665 5.665 18 C 0.183 3.817 19 C -0.110 4.110 20 C -0.016 4.016 21 C -0.092 4.092 22 C 0.268 3.732 23 C -0.166 4.166 24 O -0.823 6.823 25 O -0.433 6.433 26 C 0.064 3.936 27 C -0.110 4.110 28 C -0.156 4.156 29 C -0.088 4.088 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.154 0.846 34 H 0.162 0.838 35 H 0.148 0.852 36 H 0.116 0.884 37 H 0.434 0.566 38 H 0.214 0.786 39 H 0.249 0.751 40 H 0.124 0.876 41 H 0.306 0.694 42 H 0.122 0.878 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.024 0.976 46 H 0.040 0.960 47 H 0.112 0.888 48 H 0.118 0.882 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.121 10.481 24.805 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.063 3.937 4 C -0.225 4.225 5 C -0.111 4.111 6 C -0.170 4.170 7 C -0.144 4.144 8 C -0.130 4.130 9 C -0.110 4.110 10 O -0.832 6.832 11 Si 0.782 3.218 12 H -0.236 1.236 13 H -0.137 1.137 14 H -0.172 1.172 15 C 0.272 3.728 16 O -0.439 6.439 17 N -0.319 5.319 18 C 0.086 3.914 19 C -0.130 4.130 20 C -0.033 4.033 21 C -0.093 4.093 22 C 0.259 3.741 23 C -0.186 4.186 24 O -0.648 6.648 25 O -0.379 6.379 26 C 0.016 3.984 27 C -0.167 4.167 28 C -0.214 4.214 29 C -0.124 4.124 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.171 0.829 34 H 0.179 0.821 35 H 0.166 0.834 36 H 0.134 0.866 37 H 0.276 0.724 38 H 0.230 0.770 39 H 0.265 0.735 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.043 0.957 46 H 0.060 0.940 47 H 0.131 0.869 48 H 0.136 0.864 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.697 9.335 24.951 27.469 hybrid contribution 0.081 -0.137 -3.734 3.737 sum 6.778 9.199 21.217 24.098 Atomic orbital electron populations 1.23290 0.78031 1.04626 1.02199 1.86427 1.22248 1.27153 1.88216 1.19054 0.91694 0.85374 0.97535 1.21509 1.00811 0.91613 1.08533 1.21227 0.94366 0.97433 0.98036 1.21296 0.94598 0.97841 1.03269 1.21225 0.99988 0.91745 1.01450 1.20474 0.92991 0.97010 1.02482 1.23391 0.84883 0.94591 1.08149 1.95045 1.86043 1.67390 1.34742 0.86064 0.80944 0.80259 0.74530 1.23579 1.13730 1.17205 1.24783 0.94568 0.73912 0.79525 1.90530 1.62555 1.53719 1.37061 1.44516 1.05258 1.52721 1.29388 1.17994 0.85276 0.97842 0.90274 1.22108 0.95752 0.98852 0.96279 1.21765 0.91496 0.94735 0.95300 1.21055 1.00914 1.02962 0.84411 1.29381 0.82161 1.07420 0.55173 1.21383 0.91780 1.04244 1.01203 1.93632 1.42255 1.95176 1.33767 1.95154 1.31928 1.62130 1.48656 1.22312 0.94016 0.92325 0.89785 1.22328 0.86767 1.03591 1.04036 1.22564 1.00616 0.94951 1.03236 1.21573 0.85635 1.06283 0.98896 0.88041 0.90363 0.92325 0.82883 0.82050 0.83398 0.86586 0.72400 0.76963 0.73524 0.85879 0.86381 0.86016 0.92935 0.90518 0.95687 0.94044 0.86935 0.86375 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 114. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.40 9.81 113.37 1.11 1.51 16 2 O -0.33 -15.15 6.94 -87.95 -0.61 -15.76 16 3 C 0.11 4.84 6.10 22.50 0.14 4.98 16 4 C -0.21 -6.82 9.04 22.37 0.20 -6.61 16 5 C -0.09 -2.64 10.04 22.25 0.22 -2.41 16 6 C -0.15 -4.82 10.04 22.28 0.22 -4.60 16 7 C -0.13 -5.15 8.35 22.25 0.19 -4.97 16 8 C -0.13 -6.28 4.45 -19.77 -0.09 -6.37 16 9 C -0.01 -0.64 0.61 29.11 0.02 -0.63 16 10 O -0.89 -67.89 16.68 -125.60 -2.09 -69.98 16 11 Si 0.96 44.89 24.56 68.60 1.68 46.57 16 12 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 13 H -0.21 -6.89 7.11 99.48 0.71 -6.18 16 14 H -0.25 -11.67 5.98 99.48 0.60 -11.07 16 15 C 0.48 26.03 4.76 87.66 0.42 26.44 16 16 O -0.56 -37.43 13.93 16.01 0.22 -37.21 16 17 N -0.67 -24.66 3.25 -303.43 -0.99 -25.65 16 18 C 0.18 5.75 6.31 38.17 0.24 5.99 16 19 C -0.11 -1.61 9.95 22.45 0.22 -1.38 16 20 C -0.02 -0.14 9.72 22.24 0.22 0.08 16 21 C -0.09 -1.81 5.24 -19.66 -0.10 -1.91 16 22 C 0.27 9.94 8.12 22.70 0.18 10.12 16 23 C -0.17 -7.01 8.51 22.54 0.19 -6.82 16 24 O -0.82 -51.76 17.84 -127.95 -2.28 -54.04 16 25 O -0.43 -17.76 13.61 -127.95 -1.74 -19.50 16 26 C 0.06 1.55 1.09 -10.93 -0.01 1.54 16 27 C -0.11 -1.68 8.81 71.98 0.63 -1.05 16 28 C -0.16 -4.08 8.56 71.98 0.62 -3.46 16 29 C -0.09 -1.17 4.67 29.63 0.14 -1.03 16 30 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.08 1.83 7.66 -2.39 -0.02 1.81 16 32 H 0.06 1.64 7.66 -2.39 -0.02 1.62 16 33 H 0.15 3.89 6.30 -2.91 -0.02 3.87 16 34 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 35 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 36 H 0.12 4.76 5.34 -2.91 -0.02 4.74 16 37 H 0.43 12.25 7.31 -92.71 -0.68 11.57 16 38 H 0.21 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.25 -1.44 8.06 -2.91 -0.02 -1.46 16 40 H 0.12 7.07 6.18 -2.91 -0.02 7.05 16 41 H 0.31 17.82 9.26 -74.05 -0.69 17.13 16 42 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 45 H 0.02 0.83 6.39 -2.38 -0.02 0.82 16 46 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.16 0.26 8.12 -2.39 -0.02 0.24 16 Total: -1.00 -133.23 404.62 -0.75 -133.98 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.29 Total: 32.15 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 4.76 Total: 9.43 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: -0.99 Total: -25.65 kcal Atomic # 8 Polarization: -189.98 SS G_CDS: -6.51 Total: -196.49 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.68 Total: 46.57 kcal Total: -133.23 -0.75 -133.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584922585.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.769 kcal (2) G-P(sol) polarization free energy of solvation -133.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -133.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.70 seconds