Wall clock time and date at job start Fri Mar 27 2020 03:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21287 * 1 3 3 N 1.34774 * 120.00022 * 2 1 4 4 C 1.39958 * 120.00091 * 355.40130 * 3 2 1 5 5 C 1.38999 * 120.08890 * 215.09406 * 4 3 2 6 6 C 1.38218 * 120.48645 * 180.08860 * 5 4 3 7 7 C 1.38135 * 120.14948 * 359.91809 * 6 5 4 8 8 C 1.39497 * 119.45151 * 359.95198 * 7 6 5 9 9 C 1.38771 * 120.65010 * 359.89106 * 8 7 6 10 Xx 1.57611 * 118.34391 * 180.29669 * 8 7 6 11 10 O 1.42005 * 122.03047 * 171.37089 * 10 8 7 12 11 O 1.43352 * 115.93692 * 351.35047 * 10 8 7 13 12 C 1.43317 * 111.34555 * 41.24312 * 12 10 8 14 13 C 1.50461 * 120.25957 * 179.76586 * 7 6 5 15 14 C 1.50702 * 120.00098 * 179.97438 * 2 1 3 16 15 O 1.42906 * 109.46795 * 359.97438 * 15 2 1 17 16 Si 1.86295 * 109.47073 * 120.00326 * 15 2 1 18 17 H 1.48502 * 109.46994 * 180.02562 * 17 15 2 19 18 H 1.48501 * 109.46990 * 299.99643 * 17 15 2 20 19 H 1.48493 * 109.47431 * 60.00008 * 17 15 2 21 20 C 1.50706 * 109.46927 * 240.00343 * 15 2 1 22 21 C 1.34207 * 126.49970 * 359.95363 * 21 15 2 23 22 N 1.36905 * 109.92205 * 180.02562 * 22 21 15 24 23 H 0.97002 * 125.06742 * 179.97438 * 23 22 21 25 24 C 1.37693 * 109.86458 * 359.78678 * 23 22 21 26 25 C 1.39125 * 133.47309 * 179.57385 * 25 23 22 27 26 C 1.37955 * 119.75832 * 180.33923 * 26 25 23 28 27 F 1.35095 * 119.69614 * 180.25280 * 27 26 25 29 28 C 1.39028 * 120.60773 * 0.28362 * 27 26 25 30 29 C 1.36604 * 120.50705 * 359.96949 * 29 27 26 31 30 C 1.39632 * 119.79760 * 0.02562 * 30 29 27 32 31 H 0.96994 * 120.00234 * 175.40131 * 3 2 1 33 32 H 1.08000 * 119.75906 * 0.10202 * 5 4 3 34 33 H 1.07994 * 119.92362 * 179.89956 * 6 5 4 35 34 H 1.08004 * 120.27885 * 180.12180 * 9 8 7 36 35 H 0.96703 * 113.99680 * 179.97438 * 11 10 8 37 36 H 1.09003 * 109.32545 * 174.09041 * 13 12 10 38 37 H 1.08998 * 109.32474 * 54.62012 * 13 12 10 39 38 H 1.08994 * 109.13378 * 277.44527 * 14 7 6 40 39 H 1.09003 * 109.13544 * 36.62701 * 14 7 6 41 40 H 1.07995 * 125.03848 * 0.04165 * 22 21 15 42 41 H 1.08000 * 120.12616 * 0.62405 * 26 25 23 43 42 H 1.07998 * 119.74654 * 179.97438 * 29 27 26 44 43 H 1.07998 * 120.10290 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2129 0.0000 0.0000 3 7 1.8867 1.1672 0.0000 4 6 1.1904 2.3773 -0.0972 5 6 1.7425 3.4449 -0.7953 6 6 1.0628 4.6443 -0.8949 7 6 -0.1756 4.7913 -0.3008 8 6 -0.7326 3.7202 0.3980 9 6 -0.0562 2.5127 0.4985 10 8 -2.8687 2.8316 1.6319 11 8 -2.6692 5.2505 1.0488 12 6 -2.4150 5.8989 -0.2038 13 6 -0.9154 6.0975 -0.4032 14 6 1.9664 -1.3051 0.0006 15 8 1.0377 -2.3913 0.0017 16 14 3.0375 -1.4044 -1.5204 17 1 3.7796 -2.6907 -1.5201 18 1 2.1838 -1.3263 -2.7330 19 1 4.0025 -0.2757 -1.5209 20 6 2.8328 -1.3844 1.2312 21 6 2.9394 -0.4551 2.1936 22 7 3.8217 -0.8755 3.1523 23 1 4.0628 -0.3734 3.9465 24 6 4.3126 -2.1192 2.8233 25 6 5.2212 -2.9807 3.4297 26 6 5.5205 -4.1891 2.8353 27 9 6.3992 -5.0270 3.4278 28 6 4.9268 -4.5523 1.6318 29 6 4.0361 -3.7179 1.0183 30 6 3.7192 -2.4902 1.6032 31 1 2.8543 1.1686 0.0673 32 1 2.7096 3.3365 -1.2636 33 1 1.5010 5.4684 -1.4382 34 1 -0.4940 1.6867 1.0394 35 1 -3.7249 3.0816 2.0054 36 1 -2.9121 6.8689 -0.2152 37 1 -2.8086 5.2852 -1.0140 38 1 -0.5409 6.7809 0.3588 39 1 -0.7411 6.5306 -1.3882 40 1 2.4079 0.4849 2.2095 41 1 5.6871 -2.7066 4.3647 42 1 5.1715 -5.5016 1.1786 43 1 3.5784 -4.0068 0.0838 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631278336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 03:29:45 Heat of formation + Delta-G solvation = 40.139781 kcal Electronic energy + Delta-G solvation = -32805.472293 eV Core-core repulsion = 28010.838839 eV Total energy + Delta-G solvation = -4794.633454 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.113 amu Computer time = 5.61 seconds Orbital eigenvalues (eV) -49.83630 -42.33656 -41.69053 -39.97304 -37.59184 -37.05857 -35.59132 -34.58272 -32.73614 -32.28431 -31.99938 -31.94385 -30.36886 -29.72995 -28.87626 -26.27353 -24.16007 -24.12380 -24.09437 -22.80179 -22.13789 -21.69386 -20.26993 -19.18963 -18.41308 -18.04874 -17.67398 -17.26967 -16.94759 -16.71960 -16.57399 -16.15601 -16.09848 -15.90352 -15.68710 -15.22094 -15.19557 -15.05474 -14.90955 -14.78476 -14.60885 -14.50279 -14.41414 -14.18669 -13.84666 -13.54482 -13.31948 -13.03555 -12.89593 -12.78142 -12.56388 -12.39947 -12.19885 -11.87242 -11.84825 -11.59795 -10.89275 -10.87250 -10.67291 -10.54123 -10.44570 -9.69646 -9.45822 -9.16393 -8.64495 -8.31135 -7.81161 -6.50279 -2.71209 -0.48253 -0.28703 0.01268 0.49459 1.24294 1.36471 1.46912 1.65829 1.80254 1.96975 2.15634 2.21077 2.57947 2.81097 2.98583 3.24652 3.40779 3.44306 3.67611 3.75852 3.82705 3.92823 4.08221 4.09652 4.19454 4.27814 4.31501 4.40983 4.45755 4.54701 4.56134 4.58781 4.75540 4.82444 4.93727 4.97138 4.98195 5.02222 5.13706 5.14219 5.22938 5.34663 5.48054 5.49416 5.75486 5.82548 6.13083 6.35648 6.75948 6.87277 7.19137 7.81030 Molecular weight = 372.11amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.002425 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.319478 B =11544.201165 C =11816.841567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C 0.480 3.520 3 N -0.665 5.665 4 C 0.186 3.814 5 C -0.108 4.108 6 C -0.015 4.015 7 C -0.091 4.091 8 C 0.265 3.735 9 C -0.163 4.163 10 O -0.861 6.861 11 O -0.440 6.440 12 C 0.015 3.985 13 C -0.101 4.101 14 C 0.010 3.990 15 O -0.892 6.892 16 Si 0.960 3.040 17 H -0.265 1.265 18 H -0.304 1.304 19 H -0.204 1.204 20 C -0.163 4.163 21 C 0.025 3.975 22 N -0.571 5.571 23 H 0.434 0.566 24 C 0.118 3.882 25 C -0.158 4.158 26 C 0.110 3.890 27 F -0.138 7.138 28 C -0.185 4.185 29 C -0.050 4.050 30 C -0.132 4.132 31 H 0.435 0.565 32 H 0.214 0.786 33 H 0.247 0.753 34 H 0.127 0.873 35 H 0.300 0.700 36 H 0.180 0.820 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.159 0.841 40 H 0.176 0.824 41 H 0.165 0.835 42 H 0.150 0.850 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.449 20.503 -4.104 27.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.435 6.435 2 C 0.272 3.728 3 N -0.318 5.318 4 C 0.089 3.911 5 C -0.128 4.128 6 C -0.032 4.032 7 C -0.093 4.093 8 C 0.255 3.745 9 C -0.184 4.184 10 O -0.686 6.686 11 O -0.384 6.384 12 C -0.066 4.066 13 C -0.137 4.137 14 C -0.090 4.090 15 O -0.838 6.838 16 Si 0.781 3.219 17 H -0.190 1.190 18 H -0.231 1.231 19 H -0.128 1.128 20 C -0.170 4.170 21 C -0.099 4.099 22 N -0.177 5.177 23 H 0.275 0.725 24 C 0.009 3.991 25 C -0.179 4.179 26 C 0.089 3.911 27 F -0.117 7.117 28 C -0.204 4.204 29 C -0.069 4.069 30 C -0.137 4.137 31 H 0.277 0.723 32 H 0.231 0.769 33 H 0.263 0.737 34 H 0.144 0.856 35 H 0.131 0.869 36 H 0.194 0.806 37 H 0.096 0.904 38 H 0.137 0.863 39 H 0.176 0.824 40 H 0.193 0.807 41 H 0.183 0.817 42 H 0.168 0.832 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 18.615 19.838 -4.740 27.614 hybrid contribution -2.706 -1.135 1.837 3.462 sum 15.909 18.703 -2.903 24.725 Atomic orbital electron populations 1.90556 1.17477 1.87442 1.48053 1.24668 0.89432 0.86889 0.71781 1.44390 1.11776 1.02466 1.73194 1.17952 0.88792 0.89032 0.95302 1.22126 1.04199 0.90478 0.95975 1.21764 0.86435 0.99359 0.95678 1.21049 0.95635 0.95944 0.96636 1.29473 0.54954 0.95700 0.94333 1.21422 0.95284 0.97781 1.03869 1.93619 1.35457 1.55059 1.84493 1.95171 1.82860 1.31096 1.29286 1.23441 0.96288 0.97068 0.89840 1.21591 0.92105 0.91616 1.08355 1.22905 0.96531 0.89396 1.00172 1.95056 1.55379 1.39968 1.93350 0.86105 0.76670 0.82237 0.76842 1.18987 1.23102 1.12761 1.21532 1.00082 0.94345 1.01049 1.21692 0.97353 1.00813 0.90092 1.41440 1.38508 1.14915 1.22866 0.72532 1.17873 0.98202 0.88135 0.94931 1.19888 1.01891 0.93103 1.03044 1.17100 0.92108 0.88958 0.92923 1.91466 1.66466 1.70328 1.83393 1.20674 1.01042 1.02271 0.96457 1.20314 0.95069 0.92195 0.99307 1.19306 1.00958 0.96366 0.97064 0.72265 0.76901 0.73657 0.85580 0.86939 0.80557 0.90387 0.86342 0.82378 0.80664 0.81749 0.83199 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 66. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -35.00 13.93 15.99 0.22 -34.78 16 2 C 0.48 23.94 5.11 87.66 0.45 24.39 16 3 N -0.66 -21.46 3.65 -303.42 -1.11 -22.57 16 4 C 0.19 5.09 6.31 38.17 0.24 5.33 16 5 C -0.11 -1.19 9.95 22.45 0.22 -0.97 16 6 C -0.02 -0.08 9.72 22.24 0.22 0.13 16 7 C -0.09 -1.48 5.79 -19.66 -0.11 -1.60 16 8 C 0.26 9.02 9.44 22.70 0.21 9.23 16 9 C -0.16 -6.32 8.51 22.54 0.19 -6.13 16 10 O -0.86 -53.89 17.84 -127.95 -2.28 -56.17 16 11 O -0.44 -17.04 14.34 -127.95 -1.83 -18.87 16 12 C 0.02 0.30 7.08 71.84 0.51 0.81 16 13 C -0.10 -0.92 5.95 29.63 0.18 -0.75 16 14 C 0.01 0.54 0.78 29.10 0.02 0.56 16 15 O -0.89 -65.12 17.19 -129.94 -2.23 -67.36 16 16 Si 0.96 41.49 25.09 68.60 1.72 43.21 16 17 H -0.27 -11.63 5.99 99.48 0.60 -11.04 16 18 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 19 H -0.20 -5.86 7.11 99.48 0.71 -5.15 16 20 C -0.16 -7.40 4.51 -18.62 -0.08 -7.48 16 21 C 0.03 0.90 10.25 82.98 0.85 1.75 16 22 N -0.57 -16.19 6.07 -187.59 -1.14 -17.33 16 23 H 0.43 8.08 8.96 -92.71 -0.83 7.25 16 24 C 0.12 3.95 7.28 39.03 0.28 4.23 16 25 C -0.16 -4.42 10.05 22.42 0.23 -4.20 16 26 C 0.11 3.31 7.28 22.39 0.16 3.47 16 27 F -0.14 -3.83 17.25 44.97 0.78 -3.06 16 28 C -0.18 -6.19 9.95 22.08 0.22 -5.97 16 29 C -0.05 -2.09 9.28 22.22 0.21 -1.88 16 30 C -0.13 -5.62 5.85 -20.19 -0.12 -5.74 16 31 H 0.43 10.01 7.50 -92.71 -0.70 9.31 16 32 H 0.21 0.21 8.06 -2.91 -0.02 0.18 16 33 H 0.25 -2.07 8.06 -2.91 -0.02 -2.09 16 34 H 0.13 6.78 6.18 -2.91 -0.02 6.76 16 35 H 0.30 17.49 9.26 -74.06 -0.69 16.81 16 36 H 0.18 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.16 -0.33 8.12 -2.39 -0.02 -0.35 16 40 H 0.18 5.57 6.62 -2.91 -0.02 5.55 16 41 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 42 H 0.15 4.23 8.06 -2.91 -0.02 4.20 16 43 H 0.11 5.05 6.73 -2.91 -0.02 5.03 16 Total: -1.00 -128.96 378.67 -2.43 -131.40 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.43 Total: 30.35 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 3.87 Total: 15.19 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -2.25 Total: -39.90 kcal Atomic # 8 Polarization: -171.06 SS G_CDS: -6.13 Total: -177.19 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.06 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.72 Total: 43.21 kcal Total: -128.96 -2.43 -131.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631278336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.538 kcal (2) G-P(sol) polarization free energy of solvation -128.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -131.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.61 seconds