Wall clock time and date at job start Fri Mar 27 2020 05:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21281 * 1 3 3 N 1.34777 * 119.99670 * 2 1 4 4 C 1.39962 * 120.00015 * 354.73528 * 3 2 1 5 5 C 1.39004 * 120.08797 * 146.90002 * 4 3 2 6 6 C 1.38212 * 120.48413 * 180.08612 * 5 4 3 7 7 C 1.38129 * 120.15552 * 359.92946 * 6 5 4 8 8 C 1.39503 * 119.44744 * 359.94741 * 7 6 5 9 9 C 1.38770 * 120.65188 * 359.89015 * 8 7 6 10 Xx 1.57612 * 118.34336 * 180.29834 * 8 7 6 11 10 O 1.42003 * 122.02857 * 171.37302 * 10 8 7 12 11 O 1.43348 * 115.93766 * 351.34234 * 10 8 7 13 12 C 1.43321 * 111.34020 * 41.24997 * 12 10 8 14 13 C 1.50452 * 120.26312 * 179.76058 * 7 6 5 15 14 C 1.50697 * 120.00461 * 179.97438 * 2 1 3 16 15 O 1.42898 * 109.47067 * 0.02562 * 15 2 1 17 16 Si 1.86305 * 109.46756 * 120.00070 * 15 2 1 18 17 H 1.48498 * 109.46881 * 180.02562 * 17 15 2 19 18 H 1.48494 * 109.47179 * 300.00082 * 17 15 2 20 19 H 1.48495 * 109.47053 * 60.00300 * 17 15 2 21 20 C 1.50695 * 109.47397 * 240.00017 * 15 2 1 22 21 C 1.38223 * 119.98802 * 275.02163 * 21 15 2 23 22 C 1.38355 * 120.01318 * 179.97438 * 22 21 15 24 23 Cl 1.73597 * 120.00964 * 180.27464 * 23 22 21 25 24 C 1.38337 * 119.98708 * 0.02562 * 23 22 21 26 25 C 1.38325 * 119.97332 * 359.97438 * 25 23 22 27 26 Cl 1.73602 * 120.00790 * 180.02562 * 26 25 23 28 27 C 1.38218 * 119.98465 * 95.00243 * 21 15 2 29 28 H 0.97003 * 120.00326 * 174.74011 * 3 2 1 30 29 H 1.07998 * 119.75781 * 0.11683 * 5 4 3 31 30 H 1.08000 * 119.92139 * 179.89855 * 6 5 4 32 31 H 1.08002 * 120.28198 * 180.12506 * 9 8 7 33 32 H 0.96705 * 113.99498 * 179.97438 * 11 10 8 34 33 H 1.09007 * 109.32466 * 174.08600 * 13 12 10 35 34 H 1.09000 * 109.32663 * 54.61837 * 13 12 10 36 35 H 1.09003 * 109.13810 * 277.44058 * 14 7 6 37 36 H 1.08997 * 109.13606 * 36.62236 * 14 7 6 38 37 H 1.08002 * 119.99099 * 359.97438 * 22 21 15 39 38 H 1.08000 * 120.01326 * 179.97438 * 25 23 22 40 39 H 1.08005 * 119.99577 * 0.04150 * 28 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 7 1.8866 1.1672 0.0000 4 6 1.1912 2.3768 -0.1112 5 6 1.6634 3.5140 0.5337 6 6 0.9822 4.7122 0.4309 7 6 -0.1763 4.7897 -0.3172 8 6 -0.6505 3.6501 -0.9673 9 6 0.0310 2.4452 -0.8704 10 8 -2.4257 2.7158 -2.6556 11 8 -2.6851 5.0068 -1.6991 12 6 -1.7901 6.1261 -1.6813 13 6 -0.9227 6.0915 -0.4264 14 6 1.9664 -1.3050 0.0006 15 8 1.0379 -2.3912 0.0005 16 14 3.0375 -1.4042 -1.5206 17 1 3.7796 -2.6904 -1.5203 18 1 2.1838 -1.3261 -2.7330 19 1 4.0024 -0.2754 -1.5210 20 6 2.8328 -1.3843 1.2310 21 6 4.0901 -0.8101 1.2288 22 6 4.8858 -0.8821 2.3584 23 17 6.4621 -0.1548 2.3579 24 6 4.4230 -1.5294 3.4900 25 6 3.1647 -2.1038 3.4916 26 17 2.5827 -2.9157 4.9114 27 6 2.3697 -2.0308 2.3615 28 1 2.8536 1.1691 0.0770 29 1 2.5695 3.4610 1.1189 30 1 1.3564 5.5898 0.9371 31 1 -0.3404 1.5671 -1.3778 32 1 -3.2479 2.9131 -3.1250 33 1 -2.3680 7.0503 -1.6950 34 1 -1.1504 6.0906 -2.5631 35 1 -1.5583 6.2137 0.4507 36 1 -0.2062 6.9120 -0.4654 37 1 4.4515 -0.3052 0.3451 38 1 5.0439 -1.5862 4.3718 39 1 1.3873 -2.4796 2.3625 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631278247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 05:14:15 Heat of formation + Delta-G solvation = 32.383969 kcal Electronic energy + Delta-G solvation = -29729.718604 eV Core-core repulsion = 25162.019034 eV Total energy + Delta-G solvation = -4567.699570 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.033 amu Computer time = 4.43 seconds Orbital eigenvalues (eV) -41.96284 -40.62781 -39.80682 -37.71900 -37.34085 -37.09506 -35.63083 -34.49299 -32.76035 -32.29742 -32.02678 -31.71319 -30.96403 -29.23191 -26.76080 -24.42051 -24.21111 -23.70412 -23.01644 -21.77683 -21.12883 -18.78792 -18.37507 -17.76002 -17.23750 -16.98789 -16.75094 -16.47816 -16.19082 -16.01414 -15.61258 -15.30206 -15.26182 -15.08395 -15.00064 -14.69278 -14.64523 -14.50207 -14.24872 -14.00979 -13.41179 -13.30776 -13.07565 -13.05537 -12.92477 -12.75198 -12.51881 -12.37212 -12.04884 -11.90623 -11.83860 -11.77454 -11.63499 -11.15375 -10.86539 -10.69175 -10.57457 -9.79589 -9.72144 -9.69100 -9.47126 -8.60636 -8.00885 -6.51074 -2.74020 -0.50101 -0.32306 -0.02697 0.10632 0.78523 1.09972 1.11523 1.28916 1.36589 1.66465 1.89068 2.14445 2.34851 2.55665 2.96913 3.23069 3.42105 3.63156 3.78233 3.81154 3.92270 4.07032 4.08718 4.18981 4.25588 4.34124 4.42018 4.44600 4.50198 4.55294 4.72600 4.74890 4.81746 4.93214 4.96407 4.97260 5.10785 5.18560 5.34490 5.43108 5.48954 5.66709 6.23773 6.86904 7.06672 7.59226 Molecular weight = 383.03amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.002754 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.311621 B =10164.852444 C =10646.407586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C 0.483 3.517 3 N -0.664 5.664 4 C 0.187 3.813 5 C -0.108 4.108 6 C -0.013 4.013 7 C -0.091 4.091 8 C 0.266 3.734 9 C -0.168 4.168 10 O -0.864 6.864 11 O -0.438 6.438 12 C 0.016 3.984 13 C -0.102 4.102 14 C -0.021 4.021 15 O -0.883 6.883 16 Si 0.946 3.054 17 H -0.262 1.262 18 H -0.312 1.312 19 H -0.185 1.185 20 C -0.061 4.061 21 C -0.135 4.135 22 C -0.008 4.008 23 Cl -0.035 7.035 24 C -0.105 4.105 25 C -0.025 4.025 26 Cl -0.062 7.062 27 C -0.095 4.095 28 H 0.432 0.568 29 H 0.215 0.785 30 H 0.250 0.750 31 H 0.119 0.881 32 H 0.301 0.699 33 H 0.182 0.818 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.171 0.829 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.165 21.994 10.686 31.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.433 6.433 2 C 0.275 3.725 3 N -0.316 5.316 4 C 0.091 3.909 5 C -0.128 4.128 6 C -0.030 4.030 7 C -0.092 4.092 8 C 0.256 3.744 9 C -0.189 4.189 10 O -0.689 6.689 11 O -0.383 6.383 12 C -0.066 4.066 13 C -0.138 4.138 14 C -0.121 4.121 15 O -0.828 6.828 16 Si 0.767 3.233 17 H -0.187 1.187 18 H -0.240 1.240 19 H -0.108 1.108 20 C -0.063 4.063 21 C -0.153 4.153 22 C -0.035 4.035 23 Cl -0.006 7.006 24 C -0.124 4.124 25 C -0.052 4.052 26 Cl -0.033 7.033 27 C -0.114 4.114 28 H 0.274 0.726 29 H 0.231 0.769 30 H 0.266 0.734 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.197 0.803 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.182 0.818 37 H 0.180 0.820 38 H 0.188 0.812 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 19.245 21.177 10.491 30.478 hybrid contribution -2.752 -1.641 -1.252 3.440 sum 16.493 19.536 9.239 27.185 Atomic orbital electron populations 1.90563 1.17307 1.87412 1.47968 1.24307 0.89357 0.86739 0.72120 1.44215 1.11792 1.02849 1.72788 1.17947 0.90577 0.89080 0.93340 1.22088 1.03785 0.89272 0.97620 1.21795 0.86809 1.00402 0.93950 1.21056 0.97122 0.94626 0.96423 1.29465 0.59694 0.95194 0.90009 1.21279 0.96789 0.98513 1.02308 1.93611 1.41359 1.60640 1.73312 1.95195 1.26784 1.22428 1.93869 1.23510 0.93209 0.92096 0.97737 1.21619 0.99323 0.92775 1.00106 1.23559 0.98305 0.90158 1.00116 1.95074 1.55774 1.39312 1.92670 0.86370 0.76984 0.82709 0.77216 1.18655 1.24038 1.10813 1.20951 0.94748 0.94796 0.95794 1.21285 0.92728 1.01990 0.99333 1.20546 0.88586 0.99894 0.94505 1.98367 1.22580 1.81048 1.98640 1.20982 0.93841 0.98240 0.99386 1.20819 0.95338 1.00400 0.88648 1.98346 1.88888 1.77973 1.38054 1.20922 0.99949 0.98765 0.91812 0.72595 0.76863 0.73440 0.86362 0.86902 0.80334 0.89199 0.87075 0.81813 0.82028 0.81193 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 67. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -35.09 14.20 16.00 0.23 -34.86 16 2 C 0.48 24.39 5.74 87.66 0.50 24.89 16 3 N -0.66 -22.43 4.82 -303.42 -1.46 -23.89 16 4 C 0.19 5.45 6.28 38.17 0.24 5.69 16 5 C -0.11 -1.31 9.94 22.45 0.22 -1.09 16 6 C -0.01 -0.08 9.72 22.24 0.22 0.14 16 7 C -0.09 -1.55 5.79 -19.66 -0.11 -1.66 16 8 C 0.27 9.37 9.44 22.70 0.21 9.59 16 9 C -0.17 -6.83 8.47 22.54 0.19 -6.64 16 10 O -0.86 -54.45 17.84 -127.95 -2.28 -56.74 16 11 O -0.44 -17.28 14.34 -127.95 -1.83 -19.11 16 12 C 0.02 0.31 7.08 71.84 0.51 0.82 16 13 C -0.10 -0.97 5.95 29.63 0.18 -0.79 16 14 C -0.02 -1.12 0.72 29.10 0.02 -1.10 16 15 O -0.88 -62.72 16.04 -129.94 -2.08 -64.81 16 16 Si 0.95 41.28 24.28 68.60 1.67 42.95 16 17 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.31 -16.00 7.11 99.48 0.71 -15.30 16 19 H -0.18 -5.02 6.36 99.48 0.63 -4.39 16 20 C -0.06 -2.58 4.45 -19.87 -0.09 -2.67 16 21 C -0.13 -4.01 7.43 22.29 0.17 -3.84 16 22 C -0.01 -0.20 6.32 22.32 0.14 -0.06 16 23 Cl -0.04 -0.62 28.96 -2.72 -0.08 -0.70 16 24 C -0.11 -2.69 9.62 22.31 0.21 -2.47 16 25 C -0.03 -0.84 6.32 22.32 0.14 -0.69 16 26 Cl -0.06 -1.84 28.96 -2.72 -0.08 -1.92 16 27 C -0.10 -4.17 9.14 22.30 0.20 -3.97 16 28 H 0.43 10.28 6.61 -92.71 -0.61 9.67 16 29 H 0.21 0.41 8.06 -2.91 -0.02 0.38 16 30 H 0.25 -1.99 8.06 -2.91 -0.02 -2.01 16 31 H 0.12 6.60 6.39 -2.91 -0.02 6.58 16 32 H 0.30 17.62 9.26 -74.05 -0.69 16.94 16 33 H 0.18 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.16 -0.48 8.12 -2.39 -0.02 -0.50 16 37 H 0.16 3.77 5.14 -2.91 -0.01 3.76 16 38 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.10 5.36 7.35 -2.91 -0.02 5.34 16 Total: -1.00 -123.33 373.87 -2.43 -125.76 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.54 Total: 17.18 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 2.96 Total: 16.13 kcal Atomic # 7 Polarization: -22.43 SS G_CDS: -1.46 Total: -23.89 kcal Atomic # 8 Polarization: -169.54 SS G_CDS: -5.97 Total: -175.51 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.67 Total: 42.95 kcal Atomic # 17 Polarization: -2.46 SS G_CDS: -0.16 Total: -2.62 kcal Total: -123.33 -2.43 -125.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631278247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.145 kcal (2) G-P(sol) polarization free energy of solvation -123.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -125.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.43 seconds