Wall clock time and date at job start Fri Mar 27 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 119.99730 * 2 1 4 4 C 1.38205 * 120.00143 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.00044 * 359.96152 * 4 3 2 6 6 C 1.38211 * 119.99642 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99820 * 180.02562 * 6 5 4 8 8 O 1.42894 * 109.46956 * 29.99648 * 7 6 5 9 9 Si 1.86302 * 109.47076 * 150.00247 * 7 6 5 10 10 H 1.48502 * 109.47216 * 59.99720 * 9 7 6 11 11 H 1.48494 * 109.47049 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46745 * 299.99740 * 9 7 6 13 13 C 1.50702 * 109.46676 * 270.00088 * 7 6 5 14 14 O 1.21278 * 120.00115 * 125.00344 * 13 7 6 15 15 N 1.34781 * 120.00074 * 304.99743 * 13 7 6 16 16 C 1.46499 * 119.99880 * 180.02562 * 15 13 7 17 17 C 1.50697 * 109.47312 * 180.02562 * 16 15 13 18 18 C 1.35054 * 126.07685 * 260.02876 * 17 16 15 19 19 N 1.35059 * 108.00005 * 179.97438 * 18 17 16 20 20 C 1.46500 * 125.93112 * 179.97438 * 19 18 17 21 21 N 1.40073 * 108.14790 * 359.97438 * 19 18 17 22 22 C 1.31693 * 108.09684 * 359.75874 * 21 19 18 23 23 C 1.48283 * 126.04910 * 180.26364 * 22 21 19 24 24 C 1.39504 * 119.96922 * 144.86094 * 23 22 21 25 25 C 1.37644 * 120.02885 * 179.72003 * 24 23 22 26 26 C 1.39773 * 119.97048 * 0.53399 * 25 24 23 27 27 C 1.43196 * 120.03594 * 179.76596 * 26 25 24 28 28 N 6.62340 * 109.90990 * 310.85999 * 2 1 3 29 29 C 1.39773 * 119.93253 * 359.73737 * 26 25 24 30 30 C 1.37637 * 119.97161 * 0.02562 * 29 26 25 31 31 C 1.38211 * 120.00152 * 179.72671 * 2 1 3 32 32 H 1.08999 * 109.47015 * 90.00126 * 1 2 3 33 33 H 1.09000 * 109.46646 * 209.99278 * 1 2 3 34 34 H 1.09000 * 109.47248 * 329.99996 * 1 2 3 35 35 H 1.07999 * 120.00073 * 359.97438 * 3 2 1 36 36 H 1.07996 * 120.00462 * 179.97438 * 4 3 2 37 37 H 1.08001 * 119.99957 * 180.02562 * 5 4 3 38 38 H 0.96998 * 119.99715 * 0.02562 * 15 13 7 39 39 H 1.08996 * 109.47054 * 300.00137 * 16 15 13 40 40 H 1.08996 * 109.47082 * 60.00131 * 16 15 13 41 41 H 1.07998 * 125.99976 * 359.95795 * 18 17 16 42 42 H 1.08997 * 109.47030 * 89.99646 * 20 19 18 43 43 H 1.08997 * 109.47347 * 209.99817 * 20 19 18 44 44 H 1.09002 * 109.46384 * 329.99814 * 20 19 18 45 45 H 1.07997 * 119.98643 * 359.97438 * 24 23 22 46 46 H 1.08000 * 120.01949 * 180.24741 * 25 24 23 47 47 H 1.08003 * 120.01356 * 179.97438 * 29 26 25 48 48 H 1.08002 * 119.98852 * 179.97438 * 30 29 26 49 49 H 1.08004 * 119.99891 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2718 0.0001 0.0019 6 6 3.5807 -1.1968 0.0032 7 6 4.3343 -2.5020 0.0053 8 8 5.5826 -2.3301 0.6791 9 14 3.3271 -3.7992 0.8848 10 1 2.0298 -3.9777 0.1845 11 1 4.0694 -5.0853 0.8862 12 1 3.0791 -3.3686 2.2842 13 6 4.5860 -2.9388 -1.4149 14 8 5.7163 -3.1760 -1.7851 15 7 3.5550 -3.0659 -2.2737 16 6 3.7997 -3.4911 -3.6541 17 6 2.4917 -3.5530 -4.4000 18 6 1.7733 -4.6680 -4.6544 19 7 0.6694 -4.3052 -5.3429 20 6 -0.3814 -5.2075 -5.8200 21 7 0.7036 -2.9163 -5.5216 22 6 1.7976 -2.4571 -4.9501 23 6 2.2251 -1.0382 -4.8976 24 6 2.8874 -0.5511 -3.7706 25 6 3.2898 0.7643 -3.7229 26 6 3.0248 1.6150 -4.7998 27 6 3.4384 2.9850 -4.7496 28 7 3.7626 4.0741 -4.7099 29 6 2.3560 1.1270 -5.9260 30 6 1.9591 -0.1901 -5.9729 31 6 2.1981 -1.1969 0.0057 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3632 -0.8901 0.5137 34 1 -0.3634 0.8900 0.5138 35 1 1.6583 2.1326 -0.0004 36 1 4.1203 2.1327 0.0001 37 1 5.3518 0.0002 0.0027 38 1 2.6510 -2.8759 -1.9777 39 1 4.4624 -2.7767 -4.1422 40 1 4.2650 -4.4767 -3.6536 41 1 2.0355 -5.6732 -4.3594 42 1 -1.1515 -5.3051 -5.0549 43 1 -0.8230 -4.8019 -6.7303 44 1 0.0485 -6.1869 -6.0299 45 1 3.0881 -1.2075 -2.9368 46 1 3.8061 1.1402 -2.8520 47 1 2.1502 1.7833 -6.7587 48 1 1.4420 -0.5674 -6.8428 49 1 1.6581 -2.1322 0.0098 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521696843.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 05:47:38 Heat of formation + Delta-G solvation = 71.656419 kcal Electronic energy + Delta-G solvation = -36930.210456 eV Core-core repulsion = 32403.500806 eV Total energy + Delta-G solvation = -4526.709651 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 389.153 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -41.45139 -39.30482 -38.92762 -37.87625 -36.42177 -34.60873 -33.37449 -32.90775 -31.55826 -31.24447 -31.04011 -30.28415 -29.04486 -27.53465 -26.16634 -25.65131 -23.97323 -23.22782 -22.79514 -21.38352 -20.64933 -20.46327 -19.97680 -18.93118 -18.57817 -17.09802 -16.05620 -15.81073 -15.63713 -15.39739 -15.28084 -15.02979 -14.90466 -14.58057 -14.24749 -14.12325 -13.95178 -13.63167 -13.50776 -13.32892 -13.24409 -13.16583 -13.11023 -12.93189 -12.68538 -12.59919 -12.42389 -12.27246 -12.19978 -12.10174 -11.85498 -11.75223 -11.46766 -11.17421 -11.12645 -10.65184 -10.52174 -10.37325 -10.26242 -9.85187 -9.82058 -9.54093 -9.04043 -8.99971 -8.69472 -8.33469 -8.14893 -7.99721 -7.62926 -5.98294 -5.46433 0.51790 1.37282 1.73784 2.13888 2.22300 2.28154 2.45059 2.66518 3.09803 3.19665 3.32591 3.40072 3.87016 3.89386 3.90315 4.17952 4.34553 4.51063 4.54049 4.73667 4.75584 4.86164 4.87455 4.89363 5.11808 5.20593 5.27139 5.37553 5.41993 5.45592 5.47137 5.63969 5.74167 5.76514 5.84029 5.92675 5.97591 6.01407 6.12304 6.14640 6.19572 6.25157 6.34223 6.41234 6.44476 6.50816 6.54930 6.79192 6.79969 6.81837 6.88557 6.94097 7.28328 7.33247 7.40076 7.47694 7.50827 7.72067 7.91709 8.50335 9.42017 9.96854 Molecular weight = 389.15amu Principal moments of inertia in cm(-1) A = 0.005832 B = 0.005089 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4799.992368 B = 5500.796727 C = 8058.136968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.129 4.129 5 C -0.086 4.086 6 C -0.054 4.054 7 C 0.027 3.973 8 O -0.808 6.808 9 Si 0.927 3.073 10 H -0.296 1.296 11 H -0.279 1.279 12 H -0.271 1.271 13 C 0.490 3.510 14 O -0.530 6.530 15 N -0.747 5.747 16 C 0.189 3.811 17 C -0.230 4.230 18 C 0.072 3.928 19 N -0.374 5.374 20 C 0.103 3.897 21 N -0.280 5.280 22 C 0.121 3.879 23 C 0.014 3.986 24 C -0.096 4.096 25 C -0.058 4.058 26 C -0.028 4.028 27 C 0.260 3.740 28 N -0.424 5.424 29 C -0.077 4.077 30 C -0.097 4.097 31 C -0.158 4.158 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.392 0.608 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.179 0.821 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.158 0.842 46 H 0.139 0.861 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.030 -2.478 -13.200 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.161 4.161 4 C -0.147 4.147 5 C -0.104 4.104 6 C -0.055 4.055 7 C -0.077 4.077 8 O -0.751 6.751 9 Si 0.755 3.245 10 H -0.226 1.226 11 H -0.205 1.205 12 H -0.195 1.195 13 C 0.280 3.720 14 O -0.404 6.404 15 N -0.408 5.408 16 C 0.065 3.935 17 C -0.241 4.241 18 C -0.074 4.074 19 N -0.156 5.156 20 C -0.038 4.038 21 N -0.103 5.103 22 C -0.044 4.044 23 C 0.011 3.989 24 C -0.116 4.116 25 C -0.079 4.079 26 C -0.032 4.032 27 C -0.055 4.055 28 N -0.100 5.100 29 C -0.098 4.098 30 C -0.116 4.116 31 C -0.176 4.176 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.146 0.854 38 H 0.227 0.773 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.196 0.804 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.175 0.825 46 H 0.156 0.844 47 H 0.150 0.850 48 H 0.151 0.849 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.030 -1.400 -13.515 20.261 hybrid contribution 0.052 -0.583 0.416 0.718 sum -14.977 -1.983 -13.099 19.996 Atomic orbital electron populations 1.20722 0.92370 1.01872 1.01585 1.19656 0.94983 0.93294 1.01201 1.20724 0.94179 0.96562 1.04608 1.21132 0.94106 0.97786 1.01723 1.21094 1.01075 0.90870 0.97328 1.21438 0.92286 0.98915 0.92863 1.22540 1.01976 0.93690 0.89518 1.95091 1.22227 1.89298 1.68496 0.86642 0.74052 0.81319 0.82445 1.22582 1.20466 1.19550 1.23843 0.84083 0.75201 0.88874 1.90464 1.23054 1.48937 1.77941 1.47005 1.11220 1.72120 1.10417 1.19397 0.91014 1.00701 0.82402 1.20237 1.01779 0.91528 1.10587 1.22353 0.87868 1.00407 0.96763 1.48373 1.18298 1.05450 1.43452 1.21872 0.89164 0.91657 1.01122 1.77591 1.20226 0.88391 1.24044 1.20564 0.92892 0.93187 0.97744 1.18014 0.97440 0.88847 0.94609 1.21866 0.95444 0.95812 0.98455 1.21237 0.96879 0.92775 0.96999 1.16146 1.03928 0.85970 0.97181 1.25777 0.93457 0.92749 0.93522 1.81265 1.09045 1.11835 1.07805 1.20979 0.96740 0.95569 0.96469 1.21039 0.99628 0.92532 0.98445 1.21123 0.94553 0.97183 1.04692 0.91829 0.92184 0.92280 0.87536 0.87290 0.85402 0.77297 0.91160 0.91413 0.80388 0.90613 0.89289 0.89348 0.82531 0.84363 0.84973 0.84854 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 36.01 0.36 -1.07 16 2 C -0.09 -1.54 5.88 -104.62 -0.62 -2.15 16 3 C -0.14 -2.36 9.70 -39.59 -0.38 -2.74 16 4 C -0.13 -2.35 9.88 -39.58 -0.39 -2.74 16 5 C -0.09 -1.91 9.35 -39.58 -0.37 -2.28 16 6 C -0.05 -1.24 4.39 -104.62 -0.46 -1.70 16 7 C 0.03 0.71 0.70 -29.03 -0.02 0.69 16 8 O -0.81 -27.32 16.19 -55.09 -0.89 -28.21 16 9 Si 0.93 22.19 24.28 -169.99 -4.13 18.06 16 10 H -0.30 -5.87 6.38 56.52 0.36 -5.51 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.49 12.21 5.94 -10.98 -0.07 12.14 16 14 O -0.53 -15.24 16.51 -14.30 -0.24 -15.48 16 15 N -0.75 -14.29 2.94 -61.48 -0.18 -14.47 16 16 C 0.19 3.05 5.09 -5.20 -0.03 3.02 16 17 C -0.23 -3.10 5.44 -104.75 -0.57 -3.67 16 18 C 0.07 0.78 11.37 -17.26 -0.20 0.58 16 19 N -0.37 -3.88 4.01 -68.20 -0.27 -4.15 16 20 C 0.10 0.58 11.46 59.85 0.69 1.27 16 21 N -0.28 -3.62 12.57 33.42 0.42 -3.20 16 22 C 0.12 1.65 6.73 -82.79 -0.56 1.09 16 23 C 0.01 0.18 5.81 -104.82 -0.61 -0.43 16 24 C -0.10 -1.42 8.76 -39.33 -0.34 -1.77 16 25 C -0.06 -0.82 9.74 -39.22 -0.38 -1.20 16 26 C -0.03 -0.35 5.74 -106.83 -0.61 -0.97 16 27 C 0.26 3.55 15.33 -22.44 -0.34 3.21 16 28 N -0.42 -6.57 18.54 41.88 0.78 -5.79 16 29 C -0.08 -0.80 9.74 -39.23 -0.38 -1.19 16 30 C -0.10 -1.08 9.72 -39.33 -0.38 -1.46 16 31 C -0.16 -3.06 7.30 -39.58 -0.29 -3.35 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.13 3.19 7.48 -52.49 -0.39 2.80 16 38 H 0.39 6.98 6.25 -40.82 -0.25 6.73 16 39 H 0.07 1.19 7.79 -51.93 -0.40 0.79 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.16 2.63 4.39 -52.49 -0.23 2.40 16 46 H 0.14 2.04 7.89 -52.49 -0.41 1.63 16 47 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 48 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 49 H 0.11 2.11 5.26 -52.48 -0.28 1.83 16 LS Contribution 419.95 15.07 6.33 6.33 Total: -1.00 -37.54 419.95 -10.02 -47.55 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.88 Total: 4.07 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -5.95 Total: -4.70 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: 0.74 Total: -27.62 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -1.13 Total: -43.69 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.13 Total: 18.06 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -37.54 -10.02 -47.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521696843.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.207 kcal (2) G-P(sol) polarization free energy of solvation -37.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds