Wall clock time and date at job start Fri Mar 27 2020 04:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 C 1.50700 * 120.00273 * 179.97438 * 5 4 3 7 7 O 1.42899 * 109.46842 * 209.99656 * 6 5 4 8 8 Si 1.86301 * 109.46961 * 329.99427 * 6 5 4 9 9 H 1.48498 * 109.47154 * 60.00262 * 8 6 5 10 10 H 1.48498 * 109.47260 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47021 * 300.00392 * 8 6 5 12 12 C 1.50696 * 109.47492 * 89.99296 * 6 5 4 13 13 O 1.21282 * 119.99755 * 124.99867 * 12 6 5 14 14 N 1.34776 * 120.00260 * 305.00706 * 12 6 5 15 15 C 1.46493 * 119.99939 * 179.97438 * 14 12 6 16 16 C 1.50703 * 109.46911 * 179.97438 * 15 14 12 17 17 C 1.35059 * 126.07339 * 260.01939 * 16 15 14 18 18 N 1.35061 * 107.99287 * 179.97438 * 17 16 15 19 19 C 1.46506 * 125.92042 * 180.02562 * 18 17 16 20 20 N 1.40069 * 108.15170 * 0.02562 * 18 17 16 21 21 C 1.31680 * 108.09685 * 359.75191 * 20 18 17 22 22 C 1.48289 * 126.04936 * 180.26127 * 21 20 18 23 23 C 1.39504 * 119.96632 * 144.86573 * 22 21 20 24 24 C 1.37652 * 120.02610 * 179.72947 * 23 22 21 25 25 C 1.39768 * 119.96836 * 0.52442 * 24 23 22 26 26 C 1.43198 * 120.02888 * 179.77054 * 25 24 23 27 27 N 5.73232 * 72.43583 * 120.87023 * 2 1 3 28 28 C 1.39769 * 119.93527 * 359.74868 * 25 24 23 29 29 C 1.37643 * 119.97050 * 359.97438 * 28 25 24 30 30 C 1.38238 * 119.99712 * 359.97124 * 5 4 3 31 31 C 1.38233 * 120.00012 * 359.96176 * 30 5 4 32 32 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 33 33 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 34 34 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 35 35 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 36 36 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 37 37 H 0.97000 * 119.99933 * 359.97438 * 14 12 6 38 38 H 1.08998 * 109.47135 * 299.99178 * 15 14 12 39 39 H 1.09001 * 109.47698 * 59.99333 * 15 14 12 40 40 H 1.07995 * 126.00167 * 359.96770 * 17 16 15 41 41 H 1.09001 * 109.46680 * 90.00920 * 19 18 17 42 42 H 1.08998 * 109.46794 * 209.99916 * 19 18 17 43 43 H 1.08991 * 109.47168 * 330.00553 * 19 18 17 44 44 H 1.08001 * 119.98821 * 359.97438 * 23 22 21 45 45 H 1.07996 * 120.01223 * 180.24943 * 24 23 22 46 46 H 1.07999 * 120.01443 * 179.97438 * 28 25 24 47 47 H 1.07997 * 119.98486 * 180.02562 * 29 28 25 48 48 H 1.08002 * 119.99672 * 179.97438 * 30 5 4 49 49 H 1.08004 * 119.99493 * 180.02562 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 6 5.7787 -0.0001 0.0112 7 8 6.2574 -1.1653 -0.6633 8 14 6.4030 1.5230 -0.8612 9 1 5.9054 2.7339 -0.1602 10 1 7.8879 1.5227 -0.8561 11 1 5.9131 1.5263 -2.2631 12 6 6.2757 -0.0033 1.4339 13 8 7.0444 -0.8646 1.8057 14 7 5.8659 0.9507 2.2931 15 6 6.3487 0.9472 3.6762 16 6 5.7455 2.1098 4.4217 17 6 6.3520 3.2880 4.6827 18 7 5.4828 4.0618 5.3682 19 6 5.7376 5.4219 5.8494 20 7 4.2956 3.3384 5.5392 21 6 4.4469 2.1626 4.9660 22 6 3.4311 1.0839 4.9059 23 6 3.3457 0.2693 3.7766 24 6 2.4070 -0.7360 3.7219 25 6 1.5320 -0.9333 4.7938 26 6 0.5517 -1.9755 4.7361 27 7 -0.2229 -2.8041 4.6909 28 6 1.6150 -0.1126 5.9221 29 6 2.5584 0.8882 5.9765 30 6 3.5805 -1.1972 0.0001 31 6 2.1981 -1.1972 -0.0042 32 1 -0.3634 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5137 34 1 -0.3633 0.8900 0.5139 35 1 1.6582 2.1325 0.0004 36 1 4.1205 2.1324 0.0100 37 1 5.2513 1.6397 1.9957 38 1 6.0580 0.0148 4.1601 39 1 7.4350 1.0364 3.6822 40 1 7.3556 3.5630 4.3940 41 1 5.4416 6.1394 5.0842 42 1 5.1610 5.6001 6.7571 43 1 6.7997 5.5379 6.0650 44 1 4.0190 0.4248 2.9467 45 1 2.3438 -1.3691 2.8493 46 1 0.9393 -0.2636 6.7509 47 1 2.6231 1.5222 6.8484 48 1 4.1205 -2.1325 -0.0005 49 1 1.6582 -2.1325 -0.0080 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435858730.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 04:17:26 Heat of formation + Delta-G solvation = 71.841718 kcal Electronic energy + Delta-G solvation = -36820.491440 eV Core-core repulsion = 32293.789824 eV Total energy + Delta-G solvation = -4526.701616 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 389.153 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.45032 -39.30374 -38.91488 -37.88719 -36.45624 -34.60634 -33.39489 -33.18100 -31.30936 -31.08067 -30.39137 -30.29302 -29.90481 -27.57580 -26.48653 -25.37982 -23.78834 -22.85330 -22.70686 -21.83018 -20.65757 -20.34627 -19.96579 -18.99614 -18.77531 -17.13516 -16.12256 -15.80644 -15.58219 -15.34953 -15.16877 -14.96179 -14.75944 -14.60191 -14.22350 -14.13044 -13.96427 -13.61599 -13.51593 -13.41716 -13.25441 -13.19710 -13.09190 -12.93889 -12.68095 -12.63040 -12.46794 -12.33311 -12.20482 -12.09900 -11.89587 -11.71860 -11.45039 -11.17771 -11.11978 -10.64633 -10.48382 -10.36118 -10.30044 -9.83779 -9.81978 -9.52569 -9.03505 -8.98749 -8.68180 -8.32448 -8.14655 -8.12445 -7.55182 -5.97943 -5.45942 0.52209 1.37512 1.74011 2.12289 2.23693 2.28323 2.45380 2.67616 3.10483 3.20017 3.32906 3.40375 3.87613 3.89762 3.90466 4.18226 4.34719 4.51185 4.54231 4.73860 4.75900 4.86382 4.87627 4.89595 5.11991 5.20806 5.27395 5.37779 5.42480 5.45910 5.46899 5.64164 5.72744 5.76525 5.82492 5.91488 5.97812 6.01596 6.12452 6.13837 6.19129 6.25120 6.34390 6.39076 6.44785 6.54572 6.55166 6.78790 6.80179 6.82008 6.88212 6.94530 7.26958 7.33489 7.39709 7.47745 7.51058 7.71734 7.91530 8.50683 9.42377 9.97278 Molecular weight = 389.15amu Principal moments of inertia in cm(-1) A = 0.005702 B = 0.005192 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4909.061285 B = 5391.852479 C = 8399.967054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.114 4.114 3 C -0.120 4.120 4 C -0.156 4.156 5 C -0.060 4.060 6 C 0.027 3.973 7 O -0.808 6.808 8 Si 0.927 3.073 9 H -0.296 1.296 10 H -0.279 1.279 11 H -0.271 1.271 12 C 0.490 3.510 13 O -0.530 6.530 14 N -0.747 5.747 15 C 0.190 3.810 16 C -0.230 4.230 17 C 0.072 3.928 18 N -0.374 5.374 19 C 0.103 3.897 20 N -0.280 5.280 21 C 0.121 3.879 22 C 0.014 3.986 23 C -0.096 4.096 24 C -0.058 4.058 25 C -0.029 4.029 26 C 0.260 3.740 27 N -0.424 5.424 28 C -0.077 4.077 29 C -0.097 4.097 30 C -0.078 4.078 31 C -0.131 4.131 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.392 0.608 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.179 0.821 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.158 0.842 45 H 0.138 0.862 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.129 0.871 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 13.565 13.182 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.114 4.114 3 C -0.138 4.138 4 C -0.174 4.174 5 C -0.062 4.062 6 C -0.077 4.077 7 O -0.752 6.752 8 Si 0.756 3.244 9 H -0.226 1.226 10 H -0.205 1.205 11 H -0.196 1.196 12 C 0.280 3.720 13 O -0.404 6.404 14 N -0.408 5.408 15 C 0.065 3.935 16 C -0.241 4.241 17 C -0.074 4.074 18 N -0.156 5.156 19 C -0.038 4.038 20 N -0.103 5.103 21 C -0.044 4.044 22 C 0.011 3.989 23 C -0.116 4.116 24 C -0.079 4.079 25 C -0.033 4.033 26 C -0.055 4.055 27 N -0.099 5.099 28 C -0.098 4.098 29 C -0.116 4.116 30 C -0.096 4.096 31 C -0.149 4.149 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.227 0.773 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.196 0.804 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.175 0.825 45 H 0.156 0.844 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.147 0.853 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.743 13.015 13.494 19.924 hybrid contribution 0.564 0.312 -0.424 0.771 sum -6.179 13.327 13.070 19.663 Atomic orbital electron populations 1.20672 0.92417 1.01763 1.01345 1.19641 0.94953 0.93455 1.03346 1.20746 0.93945 0.96674 1.02417 1.21234 0.94263 0.98144 1.03773 1.21435 0.99262 0.91991 0.93483 1.22534 0.88690 1.07030 0.89454 1.95090 1.81073 1.30536 1.68457 0.86641 0.80171 0.75220 0.82389 1.22589 1.20481 1.19581 1.23852 0.80116 0.79087 0.88955 1.90465 1.35018 1.36923 1.78019 1.47002 1.50807 1.32775 1.10175 1.19398 0.97758 0.94005 0.82348 1.20239 0.95171 0.98106 1.10617 1.22356 0.97179 0.91085 0.96776 1.48375 1.10197 1.13441 1.43567 1.21872 1.02794 0.78087 1.01063 1.77586 1.03691 1.04925 1.24052 1.20564 0.93559 0.92523 0.97752 1.18011 0.93327 0.92948 0.94618 1.21866 0.98033 0.93276 0.98392 1.21231 0.92669 0.96944 0.97022 1.16148 0.95417 0.94504 0.97200 1.25701 0.93132 0.93090 0.93543 1.81185 1.10605 1.10355 1.07784 1.20977 0.98202 0.94145 0.96435 1.21037 0.94443 0.97682 0.98485 1.21090 0.92296 0.99565 0.96655 1.21029 0.94574 0.96673 1.02630 0.92155 0.92390 0.92340 0.87359 0.86707 0.77297 0.91160 0.91425 0.80384 0.90612 0.89291 0.89344 0.82531 0.84393 0.84977 0.84858 0.85346 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 36.00 0.36 -1.01 16 2 C -0.11 -1.87 5.88 -104.63 -0.62 -2.49 16 3 C -0.12 -2.01 9.70 -39.58 -0.38 -2.40 16 4 C -0.16 -3.02 7.64 -39.58 -0.30 -3.32 16 5 C -0.06 -1.39 4.39 -104.62 -0.46 -1.85 16 6 C 0.03 0.72 0.70 -29.04 -0.02 0.70 16 7 O -0.81 -27.32 16.19 -55.09 -0.89 -28.21 16 8 Si 0.93 22.16 24.29 -169.99 -4.13 18.03 16 9 H -0.30 -5.86 6.38 56.52 0.36 -5.50 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.49 12.19 5.94 -10.99 -0.07 12.13 16 13 O -0.53 -15.25 16.51 -14.31 -0.24 -15.48 16 14 N -0.75 -14.28 2.94 -61.48 -0.18 -14.46 16 15 C 0.19 3.05 5.09 -5.20 -0.03 3.02 16 16 C -0.23 -3.10 5.44 -104.74 -0.57 -3.67 16 17 C 0.07 0.78 11.37 -17.26 -0.20 0.59 16 18 N -0.37 -3.90 4.01 -68.20 -0.27 -4.17 16 19 C 0.10 0.58 11.46 59.85 0.69 1.27 16 20 N -0.28 -3.63 12.57 33.42 0.42 -3.21 16 21 C 0.12 1.65 6.73 -82.79 -0.56 1.09 16 22 C 0.01 0.18 5.81 -104.82 -0.61 -0.43 16 23 C -0.10 -1.42 8.76 -39.32 -0.34 -1.77 16 24 C -0.06 -0.82 9.74 -39.22 -0.38 -1.20 16 25 C -0.03 -0.36 5.74 -106.83 -0.61 -0.97 16 26 C 0.26 3.54 15.32 -22.50 -0.34 3.20 16 27 N -0.42 -6.53 18.53 41.80 0.77 -5.76 16 28 C -0.08 -0.81 9.74 -39.23 -0.38 -1.19 16 29 C -0.10 -1.08 9.72 -39.33 -0.38 -1.46 16 30 C -0.08 -1.74 9.35 -39.58 -0.37 -2.11 16 31 C -0.13 -2.39 9.54 -39.58 -0.38 -2.76 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.12 2.09 5.26 -52.49 -0.28 1.81 16 37 H 0.39 6.96 6.23 -40.82 -0.25 6.71 16 38 H 0.07 1.19 7.79 -51.93 -0.40 0.79 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.16 2.63 4.40 -52.49 -0.23 2.40 16 45 H 0.14 2.04 7.89 -52.49 -0.41 1.63 16 46 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 47 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.13 3.20 7.48 -52.49 -0.39 2.81 16 49 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 419.92 15.07 6.33 6.33 Total: -1.00 -37.49 419.92 -10.02 -47.51 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.88 Total: 4.04 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -5.95 Total: -4.62 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.74 Total: -27.60 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -1.13 Total: -43.69 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.13 Total: 18.03 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -37.49 -10.02 -47.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435858730.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.356 kcal (2) G-P(sol) polarization free energy of solvation -37.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds