Wall clock time and date at job start Fri Mar 27 2020 06:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38258 * 119.99863 * 2 1 4 4 C 1.38213 * 120.00048 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99564 * 359.95664 * 4 3 2 6 6 C 1.38213 * 120.00199 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99665 * 180.02562 * 6 5 4 8 8 O 1.42899 * 109.47229 * 30.00592 * 7 6 5 9 9 Si 1.86298 * 109.46841 * 150.00462 * 7 6 5 10 10 H 1.48498 * 109.47262 * 59.99917 * 9 7 6 11 11 H 1.48501 * 109.47374 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47509 * 300.00150 * 9 7 6 13 13 C 1.50699 * 109.47289 * 270.00416 * 7 6 5 14 14 O 1.21298 * 120.00035 * 125.00683 * 13 7 6 15 15 N 1.34776 * 120.00080 * 305.00172 * 13 7 6 16 16 C 1.40085 * 119.99924 * 175.36246 * 15 13 7 17 17 C 1.38866 * 119.99543 * 214.81456 * 16 15 13 18 18 C 1.38045 * 120.00079 * 179.76825 * 17 16 15 19 19 C 1.38886 * 119.99747 * 0.51203 * 18 17 16 20 20 N 1.39990 * 120.00689 * 179.72235 * 19 18 17 21 21 C 1.34778 * 120.00462 * 215.12915 * 20 19 18 22 22 O 1.21718 * 119.99647 * 355.37947 * 21 20 19 23 23 C 1.46539 * 120.00290 * 175.38267 * 21 20 19 24 24 S 1.75832 * 125.45808 * 359.69139 * 23 21 20 25 25 C 1.70620 * 91.56450 * 179.97438 * 24 23 21 26 26 C 1.33852 * 110.95037 * 0.30991 * 25 24 23 27 27 C 1.36692 * 125.46248 * 179.97438 * 23 21 20 28 28 C 1.38898 * 119.99466 * 359.74497 * 19 18 17 29 29 C 1.38038 * 119.99756 * 0.02562 * 28 19 18 30 30 C 1.38210 * 119.99715 * 179.72286 * 2 1 3 31 31 H 1.08998 * 109.47302 * 90.00019 * 1 2 3 32 32 H 1.09001 * 109.47099 * 209.99973 * 1 2 3 33 33 H 1.09007 * 109.46879 * 330.00004 * 1 2 3 34 34 H 1.07999 * 119.99831 * 359.97438 * 3 2 1 35 35 H 1.07995 * 120.00083 * 179.97438 * 4 3 2 36 36 H 1.08000 * 119.99718 * 180.02562 * 5 4 3 37 37 H 0.96998 * 119.99972 * 355.35926 * 15 13 7 38 38 H 1.08002 * 120.00058 * 0.02828 * 17 16 15 39 39 H 1.08002 * 120.00155 * 180.25525 * 18 17 16 40 40 H 0.97006 * 119.99465 * 35.12412 * 20 19 18 41 41 H 1.07992 * 124.52478 * 180.02562 * 25 24 23 42 42 H 1.08004 * 122.44561 * 179.73894 * 26 25 24 43 43 H 1.08007 * 123.35476 * 359.94159 * 27 23 21 44 44 H 1.07995 * 119.99845 * 179.97438 * 28 19 18 45 45 H 1.07999 * 119.99879 * 179.97438 * 29 28 19 46 46 H 1.07989 * 120.00488 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0002 6 6 3.5806 -1.1970 0.0013 7 6 4.3342 -2.5020 0.0023 8 8 5.5830 -2.3305 0.6754 9 14 3.3276 -3.7995 0.8820 10 1 2.0298 -3.9778 0.1826 11 1 4.0698 -5.0857 0.8825 12 1 3.0804 -3.3695 2.2818 13 6 4.5849 -2.9384 -1.4182 14 8 5.7151 -3.1756 -1.7893 15 7 3.5534 -3.0652 -2.2763 16 6 3.7948 -3.3760 -3.6207 17 6 2.9840 -2.8415 -4.6133 18 6 3.2248 -3.1439 -5.9385 19 6 4.2714 -3.9913 -6.2783 20 7 4.5121 -4.3027 -7.6217 21 6 4.9520 -5.5308 -7.9605 22 8 5.2203 -6.3418 -7.0934 23 6 5.1074 -5.8897 -9.3727 24 16 4.7562 -4.8377 -10.7372 25 6 5.2123 -6.0492 -11.8487 26 6 5.5927 -7.1637 -11.2125 27 6 5.5434 -7.0978 -9.8406 28 6 5.0790 -4.5301 -5.2850 29 6 4.8410 -4.2238 -3.9603 30 6 2.1980 -1.1970 0.0058 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6583 2.1326 -0.0004 35 1 4.1204 2.1327 -0.0010 36 1 5.3517 0.0000 -0.0002 37 1 2.6438 -2.9413 -1.9629 38 1 2.1676 -2.1858 -4.3488 39 1 2.5967 -2.7249 -6.7108 40 1 4.3622 -3.6346 -8.3088 41 1 5.1919 -5.9339 -12.9222 42 1 5.9152 -8.0500 -11.7388 43 1 5.8212 -7.9190 -9.1964 44 1 5.8926 -5.1894 -5.5491 45 1 5.4687 -4.6431 -3.1879 46 1 1.6581 -2.1322 0.0107 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358199861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 06:58:57 Heat of formation + Delta-G solvation = -31.571874 kcal Electronic energy + Delta-G solvation = -32763.937287 eV Core-core repulsion = 28289.610817 eV Total energy + Delta-G solvation = -4474.326470 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 395.102 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.59470 -39.54607 -38.61274 -38.02291 -37.25095 -34.99419 -33.31897 -32.88136 -31.47910 -30.66617 -30.39316 -29.11479 -28.19372 -26.20269 -25.49887 -24.35411 -22.91592 -22.51292 -21.49557 -20.99073 -20.42156 -19.74322 -19.00488 -18.51288 -17.43764 -16.95067 -16.20650 -16.10454 -15.80118 -15.54607 -15.27175 -14.94497 -14.41702 -14.21082 -14.11925 -13.85742 -13.53207 -13.44166 -13.33457 -13.30023 -13.18684 -12.98320 -12.74396 -12.73576 -12.58231 -12.40113 -12.24952 -11.90673 -11.81968 -11.44857 -11.25584 -11.06449 -10.59409 -10.57914 -10.39904 -10.30855 -10.10892 -9.90683 -9.60774 -9.33195 -9.10095 -9.02882 -8.89978 -8.55987 -8.03692 -7.68644 -7.30412 -6.07981 -5.55258 0.08088 1.02880 1.42890 1.54810 1.72385 2.05945 2.11286 2.18290 2.83886 2.95377 3.15590 3.26798 3.36294 3.75191 3.98310 4.15720 4.44186 4.47766 4.58529 4.65105 4.87971 5.06540 5.13746 5.23514 5.37475 5.42802 5.52366 5.66894 5.69480 5.71176 5.73701 5.79721 5.82043 5.87432 5.90809 6.09510 6.10118 6.15668 6.33792 6.37081 6.45076 6.47825 6.60652 6.76566 6.84132 6.87405 6.91208 7.08196 7.23514 7.24572 7.35270 7.57006 7.68258 7.88051 7.91883 8.30051 9.25102 9.84548 Molecular weight = 395.10amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.001809 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.512649 B =15476.418481 C =16369.363556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.127 4.127 5 C -0.085 4.085 6 C -0.056 4.056 7 C 0.026 3.974 8 O -0.805 6.805 9 Si 0.930 3.070 10 H -0.294 1.294 11 H -0.276 1.276 12 H -0.266 1.266 13 C 0.489 3.511 14 O -0.511 6.511 15 N -0.689 5.689 16 C 0.160 3.840 17 C -0.142 4.142 18 C -0.120 4.120 19 C 0.100 3.900 20 N -0.663 5.663 21 C 0.587 3.413 22 O -0.507 6.507 23 C -0.265 4.265 24 S 0.199 5.801 25 C -0.228 4.228 26 C -0.149 4.149 27 C -0.053 4.053 28 C -0.094 4.094 29 C -0.112 4.112 30 C -0.157 4.157 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.403 0.597 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.404 0.596 41 H 0.170 0.830 42 H 0.147 0.853 43 H 0.156 0.844 44 H 0.137 0.863 45 H 0.145 0.855 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 -1.122 -22.717 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.162 4.162 4 C -0.145 4.145 5 C -0.103 4.103 6 C -0.057 4.057 7 C -0.078 4.078 8 O -0.748 6.748 9 Si 0.757 3.243 10 H -0.224 1.224 11 H -0.201 1.201 12 H -0.191 1.191 13 C 0.280 3.720 14 O -0.384 6.384 15 N -0.338 5.338 16 C 0.063 3.937 17 C -0.163 4.163 18 C -0.141 4.141 19 C 0.007 3.993 20 N -0.308 5.308 21 C 0.374 3.626 22 O -0.384 6.384 23 C -0.385 4.385 24 S 0.466 5.534 25 C -0.366 4.366 26 C -0.180 4.180 27 C -0.086 4.086 28 C -0.115 4.115 29 C -0.133 4.133 30 C -0.174 4.174 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.238 0.762 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.239 0.761 41 H 0.187 0.813 42 H 0.165 0.835 43 H 0.174 0.826 44 H 0.155 0.845 45 H 0.162 0.838 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.506 -0.930 -21.839 23.455 hybrid contribution 0.068 -0.826 -0.500 0.967 sum -8.438 -1.756 -22.339 23.943 Atomic orbital electron populations 1.20719 0.92159 1.02005 1.01573 1.19692 0.95117 0.93319 1.01470 1.20748 0.94202 0.96616 1.04676 1.21134 0.94144 0.97796 1.01439 1.21104 1.01115 0.90987 0.97091 1.21393 0.92434 0.98780 0.93099 1.22605 1.02300 0.94076 0.88815 1.95100 1.22082 1.89450 1.68158 0.86587 0.74074 0.81019 0.82610 1.22351 1.20107 1.19057 1.24293 0.83939 0.74710 0.89099 1.90457 1.23078 1.47554 1.77311 1.44605 1.11510 1.71209 1.06518 1.18128 0.96332 0.94079 0.85123 1.20685 1.02219 1.02049 0.91377 1.20515 0.96519 1.00902 0.96142 1.17540 0.97300 1.01990 0.82500 1.43184 1.66721 1.13360 1.07504 1.16989 0.77367 0.81726 0.86549 1.90870 1.48548 1.49663 1.49271 1.24598 1.16572 1.00610 0.96723 1.83004 1.60820 1.15372 0.94217 1.25351 1.07526 0.98643 1.05099 1.20082 1.04572 0.99773 0.93608 1.20863 0.96081 0.96572 0.95115 1.21126 0.98858 0.99988 0.91510 1.21339 0.98666 0.96798 0.96484 1.21113 0.94448 0.97271 1.04617 0.91831 0.92037 0.92227 0.87370 0.87137 0.85415 0.76153 0.85448 0.85902 0.76120 0.81265 0.83526 0.82639 0.84518 0.83780 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.01 36.01 0.36 -1.03 16 2 C -0.10 -1.65 5.88 -104.62 -0.62 -2.27 16 3 C -0.14 -2.46 9.70 -39.58 -0.38 -2.84 16 4 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 5 C -0.08 -2.00 9.35 -39.58 -0.37 -2.37 16 6 C -0.06 -1.35 4.40 -104.62 -0.46 -1.81 16 7 C 0.03 0.72 0.70 -29.04 -0.02 0.70 16 8 O -0.80 -27.77 16.19 -55.09 -0.89 -28.67 16 9 Si 0.93 22.68 24.20 -169.99 -4.11 18.57 16 10 H -0.29 -5.90 6.38 56.52 0.36 -5.54 16 11 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.49 12.93 5.79 -10.99 -0.06 12.87 16 14 O -0.51 -15.26 13.94 -14.32 -0.20 -15.46 16 15 N -0.69 -14.64 4.90 -9.82 -0.05 -14.69 16 16 C 0.16 3.11 6.30 -83.62 -0.53 2.59 16 17 C -0.14 -2.20 9.96 -39.42 -0.39 -2.60 16 18 C -0.12 -1.63 9.96 -39.41 -0.39 -2.03 16 19 C 0.10 1.50 6.30 -83.65 -0.53 0.98 16 20 N -0.66 -8.01 5.33 -11.04 -0.06 -8.07 16 21 C 0.59 7.80 7.62 -12.91 -0.10 7.70 16 22 O -0.51 -8.61 14.27 5.17 0.07 -8.54 16 23 C -0.26 -2.69 6.45 -36.80 -0.24 -2.93 16 24 S 0.20 1.33 22.16 -107.50 -2.38 -1.06 16 25 C -0.23 -1.35 10.93 29.19 0.32 -1.03 16 26 C -0.15 -1.02 10.15 -41.42 -0.42 -1.44 16 27 C -0.05 -0.49 10.01 -40.43 -0.40 -0.89 16 28 C -0.09 -1.70 8.69 -39.41 -0.34 -2.04 16 29 C -0.11 -2.28 8.69 -39.42 -0.34 -2.63 16 30 C -0.16 -3.13 7.39 -39.58 -0.29 -3.43 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.13 3.33 7.48 -52.49 -0.39 2.94 16 37 H 0.40 7.48 7.10 -40.82 -0.29 7.19 16 38 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.40 3.52 7.95 -40.82 -0.32 3.20 16 41 H 0.17 0.57 8.06 -52.49 -0.42 0.14 16 42 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 44 H 0.14 2.52 6.21 -52.49 -0.33 2.19 16 45 H 0.14 3.31 6.22 -52.49 -0.33 2.99 16 46 H 0.12 2.15 5.26 -52.49 -0.28 1.87 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -38.20 400.87 -12.18 -50.38 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.99 Total: 8.79 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -5.61 Total: -7.31 kcal Atomic # 7 Polarization: -22.65 SS G_CDS: -0.11 Total: -22.76 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -1.02 Total: -52.66 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.11 Total: 18.57 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.38 Total: -1.06 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.20 -12.18 -50.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358199861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.809 kcal (2) G-P(sol) polarization free energy of solvation -38.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds