Wall clock time and date at job start Fri Mar 27 2020 06:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38258 * 119.99863 * 2 1 4 4 C 1.38213 * 120.00048 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99564 * 359.95664 * 4 3 2 6 6 C 1.38213 * 120.00199 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99665 * 180.02562 * 6 5 4 8 8 O 1.42899 * 109.47229 * 30.00592 * 7 6 5 9 9 Si 1.86298 * 109.46841 * 150.00462 * 7 6 5 10 10 H 1.48498 * 109.47262 * 59.99917 * 9 7 6 11 11 H 1.48501 * 109.47374 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47509 * 300.00150 * 9 7 6 13 13 C 1.50699 * 109.47289 * 270.00416 * 7 6 5 14 14 O 1.21298 * 120.00035 * 125.00683 * 13 7 6 15 15 N 1.34776 * 120.00080 * 305.00172 * 13 7 6 16 16 C 1.40085 * 119.99924 * 175.36246 * 15 13 7 17 17 C 1.38866 * 119.99543 * 214.81456 * 16 15 13 18 18 C 1.38045 * 120.00079 * 179.76825 * 17 16 15 19 19 C 1.38886 * 119.99747 * 0.51203 * 18 17 16 20 20 N 1.39990 * 120.00689 * 179.72235 * 19 18 17 21 21 C 1.34778 * 120.00462 * 215.12915 * 20 19 18 22 22 O 1.21718 * 119.99647 * 355.37947 * 21 20 19 23 23 C 1.46539 * 120.00290 * 175.38267 * 21 20 19 24 24 S 1.75832 * 125.45808 * 359.69139 * 23 21 20 25 25 C 1.70620 * 91.56450 * 179.97438 * 24 23 21 26 26 C 1.33852 * 110.95037 * 0.30991 * 25 24 23 27 27 C 1.36692 * 125.46248 * 179.97438 * 23 21 20 28 28 C 1.38898 * 119.99466 * 359.74497 * 19 18 17 29 29 C 1.38038 * 119.99756 * 0.02562 * 28 19 18 30 30 C 1.38210 * 119.99715 * 179.72286 * 2 1 3 31 31 H 1.08998 * 109.47302 * 90.00019 * 1 2 3 32 32 H 1.09001 * 109.47099 * 209.99973 * 1 2 3 33 33 H 1.09007 * 109.46879 * 330.00004 * 1 2 3 34 34 H 1.07999 * 119.99831 * 359.97438 * 3 2 1 35 35 H 1.07995 * 120.00083 * 179.97438 * 4 3 2 36 36 H 1.08000 * 119.99718 * 180.02562 * 5 4 3 37 37 H 0.96998 * 119.99972 * 355.35926 * 15 13 7 38 38 H 1.08002 * 120.00058 * 0.02828 * 17 16 15 39 39 H 1.08002 * 120.00155 * 180.25525 * 18 17 16 40 40 H 0.97006 * 119.99465 * 35.12412 * 20 19 18 41 41 H 1.07992 * 124.52478 * 180.02562 * 25 24 23 42 42 H 1.08004 * 122.44561 * 179.73894 * 26 25 24 43 43 H 1.08007 * 123.35476 * 359.94159 * 27 23 21 44 44 H 1.07995 * 119.99845 * 179.97438 * 28 19 18 45 45 H 1.07999 * 119.99879 * 179.97438 * 29 28 19 46 46 H 1.07989 * 120.00488 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0002 6 6 3.5806 -1.1970 0.0013 7 6 4.3342 -2.5020 0.0023 8 8 5.5830 -2.3305 0.6754 9 14 3.3276 -3.7995 0.8820 10 1 2.0298 -3.9778 0.1826 11 1 4.0698 -5.0857 0.8825 12 1 3.0804 -3.3695 2.2818 13 6 4.5849 -2.9384 -1.4182 14 8 5.7151 -3.1756 -1.7893 15 7 3.5534 -3.0652 -2.2763 16 6 3.7948 -3.3760 -3.6207 17 6 2.9840 -2.8415 -4.6133 18 6 3.2248 -3.1439 -5.9385 19 6 4.2714 -3.9913 -6.2783 20 7 4.5121 -4.3027 -7.6217 21 6 4.9520 -5.5308 -7.9605 22 8 5.2203 -6.3418 -7.0934 23 6 5.1074 -5.8897 -9.3727 24 16 4.7562 -4.8377 -10.7372 25 6 5.2123 -6.0492 -11.8487 26 6 5.5927 -7.1637 -11.2125 27 6 5.5434 -7.0978 -9.8406 28 6 5.0790 -4.5301 -5.2850 29 6 4.8410 -4.2238 -3.9603 30 6 2.1980 -1.1970 0.0058 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6583 2.1326 -0.0004 35 1 4.1204 2.1327 -0.0010 36 1 5.3517 0.0000 -0.0002 37 1 2.6438 -2.9413 -1.9629 38 1 2.1676 -2.1858 -4.3488 39 1 2.5967 -2.7249 -6.7108 40 1 4.3622 -3.6346 -8.3088 41 1 5.1919 -5.9339 -12.9222 42 1 5.9152 -8.0500 -11.7388 43 1 5.8212 -7.9190 -9.1964 44 1 5.8926 -5.1894 -5.5491 45 1 5.4687 -4.6431 -3.1879 46 1 1.6581 -2.1322 0.0107 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358199861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 06:58:56 Heat of formation + Delta-G solvation = -59.531842 kcal Electronic energy + Delta-G solvation = -32765.149723 eV Core-core repulsion = 28289.610817 eV Total energy + Delta-G solvation = -4475.538905 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 395.102 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.83098 -41.13065 -40.03916 -39.19720 -38.34909 -36.39774 -35.02229 -34.47219 -32.98040 -31.99076 -31.29821 -31.01941 -29.45901 -27.47064 -26.67381 -25.77593 -24.25279 -23.77317 -22.91526 -22.26156 -21.95235 -20.64418 -20.32882 -19.65334 -18.67225 -18.39335 -17.83720 -17.19552 -16.91809 -16.72750 -16.59003 -16.41319 -15.87233 -15.63835 -15.41351 -15.24020 -15.13589 -14.83421 -14.66541 -14.38209 -14.26930 -14.12886 -14.02515 -13.80273 -13.74553 -13.68330 -13.52817 -13.22808 -12.98990 -12.70874 -12.45563 -12.37707 -12.23746 -12.06041 -12.02996 -11.94017 -11.73403 -11.41520 -11.29195 -10.90779 -10.55493 -9.95914 -9.94635 -9.58139 -9.54663 -9.30404 -8.75900 -8.43560 -7.84931 -0.60539 0.19733 0.38030 0.43997 0.56497 0.62986 0.88363 1.14024 1.25566 1.35548 1.39823 1.81977 1.86338 2.04866 2.25556 2.52291 2.82776 3.05573 3.60481 3.91594 3.98784 4.08023 4.12396 4.15398 4.29126 4.30080 4.33052 4.39807 4.45640 4.49553 4.52702 4.63028 4.65847 4.81056 4.85476 4.98410 4.99215 5.02790 5.07349 5.12591 5.17430 5.24723 5.31287 5.33121 5.36454 5.44151 5.46428 5.61323 5.71864 5.79643 6.03677 6.06808 6.23912 6.32050 6.55428 6.92314 7.32497 7.78287 Molecular weight = 395.10amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.001809 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.512649 B =15476.418481 C =16369.363556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.080 4.080 3 C -0.132 4.132 4 C -0.120 4.120 5 C -0.131 4.131 6 C -0.082 4.082 7 C -0.026 4.026 8 O -0.896 6.896 9 Si 0.958 3.042 10 H -0.208 1.208 11 H -0.310 1.310 12 H -0.268 1.268 13 C 0.487 3.513 14 O -0.570 6.570 15 N -0.671 5.671 16 C 0.124 3.876 17 C -0.121 4.121 18 C -0.100 4.100 19 C 0.113 3.887 20 N -0.651 5.651 21 C 0.584 3.416 22 O -0.557 6.557 23 C -0.308 4.308 24 S 0.253 5.747 25 C -0.213 4.213 26 C -0.162 4.162 27 C -0.057 4.057 28 C -0.111 4.111 29 C -0.138 4.138 30 C -0.161 4.161 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.156 0.844 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.417 0.583 38 H 0.166 0.834 39 H 0.180 0.820 40 H 0.424 0.576 41 H 0.204 0.796 42 H 0.169 0.831 43 H 0.143 0.857 44 H 0.119 0.881 45 H 0.098 0.902 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.412 1.370 -27.198 31.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.138 4.138 5 C -0.150 4.150 6 C -0.083 4.083 7 C -0.126 4.126 8 O -0.843 6.843 9 Si 0.781 3.219 10 H -0.132 1.132 11 H -0.238 1.238 12 H -0.193 1.193 13 C 0.278 3.722 14 O -0.448 6.448 15 N -0.320 5.320 16 C 0.029 3.971 17 C -0.142 4.142 18 C -0.120 4.120 19 C 0.019 3.981 20 N -0.297 5.297 21 C 0.374 3.626 22 O -0.437 6.437 23 C -0.428 4.428 24 S 0.521 5.479 25 C -0.350 4.350 26 C -0.192 4.192 27 C -0.092 4.092 28 C -0.132 4.132 29 C -0.160 4.160 30 C -0.179 4.179 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.174 0.826 35 H 0.152 0.848 36 H 0.091 0.909 37 H 0.256 0.744 38 H 0.184 0.816 39 H 0.197 0.803 40 H 0.263 0.737 41 H 0.221 0.779 42 H 0.186 0.814 43 H 0.160 0.840 44 H 0.137 0.863 45 H 0.116 0.884 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.172 1.605 -26.414 30.503 hybrid contribution 2.111 -1.550 0.627 2.693 sum -13.060 0.055 -25.787 28.906 Atomic orbital electron populations 1.20843 0.87899 1.03829 1.03725 1.20263 0.97935 0.91917 0.97873 1.21267 0.92938 0.98763 1.02006 1.21348 0.95686 0.96659 1.00060 1.20910 0.98938 0.93604 1.01528 1.20999 0.94353 0.96637 0.96296 1.23477 1.01422 0.98282 0.89408 1.94990 1.26714 1.91733 1.70821 0.86144 0.76706 0.76945 0.82074 1.13188 1.23806 1.19318 1.24020 0.84139 0.74262 0.89734 1.90420 1.25528 1.50403 1.78414 1.44023 1.10767 1.70294 1.06960 1.18341 0.97889 0.95958 0.84923 1.21065 1.01467 1.00759 0.90879 1.21043 0.95498 0.98819 0.96626 1.17656 0.96529 1.00754 0.83188 1.43078 1.66266 1.13710 1.06650 1.17508 0.76082 0.81343 0.87698 1.90851 1.50611 1.51098 1.51154 1.24395 1.19716 1.02501 0.96204 1.82746 1.59400 1.13914 0.91861 1.25859 1.04796 0.97676 1.06713 1.20229 1.05330 1.01259 0.92412 1.21035 0.95576 0.96111 0.96455 1.20977 0.99752 1.00945 0.91522 1.21051 0.99561 0.98789 0.96555 1.21207 0.92199 0.99628 1.04835 0.89267 0.90984 0.89836 0.82594 0.84764 0.90856 0.74444 0.81616 0.80285 0.73730 0.77912 0.81402 0.83959 0.86289 0.88425 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 10.01 71.24 0.71 -1.26 16 2 C -0.08 -2.36 5.88 -19.86 -0.12 -2.48 16 3 C -0.13 -3.91 9.70 22.27 0.22 -3.69 16 4 C -0.12 -4.47 10.05 22.27 0.22 -4.25 16 5 C -0.13 -6.63 9.35 22.27 0.21 -6.43 16 6 C -0.08 -4.10 4.40 -19.87 -0.09 -4.19 16 7 C -0.03 -1.55 0.70 29.10 0.02 -1.53 16 8 O -0.90 -68.85 16.19 -129.99 -2.10 -70.95 16 9 Si 0.96 47.59 24.20 68.60 1.66 49.25 16 10 H -0.21 -7.39 6.38 99.48 0.64 -6.76 16 11 H -0.31 -17.04 7.11 99.48 0.71 -16.33 16 12 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 13 C 0.49 27.98 5.79 87.66 0.51 28.49 16 14 O -0.57 -38.26 13.94 15.90 0.22 -38.04 16 15 N -0.67 -29.36 4.90 -303.37 -1.49 -30.84 16 16 C 0.12 4.95 6.30 38.12 0.24 5.19 16 17 C -0.12 -3.39 9.96 22.37 0.22 -3.16 16 18 C -0.10 -2.31 9.96 22.38 0.22 -2.09 16 19 C 0.11 3.29 6.30 38.15 0.24 3.53 16 20 N -0.65 -14.76 5.33 -307.06 -1.64 -16.40 16 21 C 0.58 15.70 7.62 86.41 0.66 16.36 16 22 O -0.56 -20.29 14.27 -4.41 -0.06 -20.35 16 23 C -0.31 -5.99 6.45 24.07 0.16 -5.83 16 24 S 0.25 2.51 22.16 -56.49 -1.25 1.26 16 25 C -0.21 -1.67 10.93 66.82 0.73 -0.94 16 26 C -0.16 -1.82 10.15 21.08 0.21 -1.60 16 27 C -0.06 -1.02 10.01 21.72 0.22 -0.81 16 28 C -0.11 -4.32 8.69 22.38 0.19 -4.12 16 29 C -0.14 -6.21 8.69 22.37 0.19 -6.02 16 30 C -0.16 -6.06 7.39 22.27 0.16 -5.90 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 33 H 0.08 1.23 8.09 -2.38 -0.02 1.21 16 34 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 36 H 0.07 4.38 7.48 -2.91 -0.02 4.36 16 37 H 0.42 14.96 7.10 -92.71 -0.66 14.31 16 38 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 40 H 0.42 6.04 7.95 -92.70 -0.74 5.31 16 41 H 0.20 0.24 8.06 -2.91 -0.02 0.21 16 42 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 44 H 0.12 4.95 6.21 -2.91 -0.02 4.94 16 45 H 0.10 5.23 6.22 -2.91 -0.02 5.21 16 46 H 0.14 4.41 5.26 -2.92 -0.02 4.40 16 Total: -1.00 -104.06 400.87 0.84 -103.23 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.36 Total: 23.60 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.14 Total: -0.74 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -3.12 Total: -47.24 kcal Atomic # 8 Polarization: -127.40 SS G_CDS: -1.95 Total: -129.34 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.66 Total: 49.25 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.25 Total: 1.26 kcal Total: -104.06 0.84 -103.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358199861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.694 kcal (2) G-P(sol) polarization free energy of solvation -104.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds