Wall clock time and date at job start Fri Mar 27 2020 03:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 119.99950 * 2 1 4 4 C 1.38213 * 120.00085 * 179.97438 * 3 2 1 5 5 C 1.38265 * 119.99984 * 0.02562 * 4 3 2 6 6 C 1.38210 * 119.99710 * 359.96396 * 5 4 3 7 7 C 1.50699 * 119.99959 * 179.97438 * 6 5 4 8 8 O 1.42902 * 109.47377 * 209.99931 * 7 6 5 9 9 Si 1.86299 * 109.47238 * 329.99807 * 7 6 5 10 10 H 1.48497 * 109.47255 * 179.97438 * 9 7 6 11 11 H 1.48497 * 109.47035 * 300.00135 * 9 7 6 12 12 H 1.48499 * 109.46973 * 59.99980 * 9 7 6 13 13 C 1.50700 * 109.47233 * 89.99733 * 7 6 5 14 14 O 1.21289 * 119.99928 * 124.99800 * 13 7 6 15 15 N 1.34776 * 119.99874 * 305.00373 * 13 7 6 16 16 C 1.39922 * 119.99804 * 176.19694 * 15 13 7 17 17 C 1.38873 * 120.07599 * 35.28901 * 16 15 13 18 18 C 1.38104 * 119.93440 * 180.02562 * 17 16 15 19 19 C 1.38290 * 120.07001 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.92690 * 179.97438 * 19 18 17 21 21 H 1.09010 * 109.46825 * 203.08126 * 20 19 18 22 22 C 1.47201 * 109.47491 * 323.07715 * 20 19 18 23 23 N 9.46455 * 106.07536 * 117.00059 * 6 1 2 24 24 C 1.50698 * 109.47285 * 83.08481 * 20 19 18 25 25 C 1.38239 * 119.99655 * 304.28557 * 24 20 19 26 26 C 1.38241 * 120.00058 * 179.78954 * 25 24 20 27 27 C 1.38237 * 119.99423 * 0.43765 * 26 25 24 28 28 C 1.38229 * 120.00610 * 359.81707 * 27 26 25 29 29 C 1.38234 * 120.00326 * 124.55642 * 24 20 19 30 30 C 1.38278 * 120.13808 * 0.25508 * 19 18 17 31 31 C 1.38108 * 120.07371 * 359.49455 * 30 19 18 32 32 C 1.38211 * 120.00145 * 180.20281 * 2 1 3 33 33 H 1.08999 * 109.46942 * 90.00202 * 1 2 3 34 34 H 1.08998 * 109.47048 * 210.00761 * 1 2 3 35 35 H 1.08999 * 109.47166 * 330.00250 * 1 2 3 36 36 H 1.08004 * 120.00161 * 359.97438 * 3 2 1 37 37 H 1.07998 * 120.00445 * 179.97438 * 4 3 2 38 38 H 1.07992 * 120.00180 * 179.97438 * 5 4 3 39 39 H 0.97005 * 120.00171 * 356.19351 * 15 13 7 40 40 H 1.08003 * 120.02817 * 0.02562 * 17 16 15 41 41 H 1.08001 * 119.96737 * 180.02562 * 18 17 16 42 42 H 1.08004 * 119.99885 * 359.97438 * 25 24 20 43 43 H 1.07989 * 120.00008 * 180.27130 * 26 25 24 44 44 H 1.08007 * 119.99689 * 179.83182 * 27 26 25 45 45 H 1.07995 * 120.00819 * 179.97438 * 28 27 26 46 46 H 1.08001 * 119.99865 * 359.97438 * 29 24 20 47 47 H 1.08004 * 119.96026 * 179.74292 * 30 19 18 48 48 H 1.08001 * 120.03874 * 180.25148 * 31 30 19 49 49 H 1.08003 * 119.99793 * 0.05031 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1969 0.0008 7 6 4.3342 -2.5020 0.0002 8 8 3.5615 -3.4979 -0.6732 9 14 5.9615 -2.2792 -0.8790 10 1 6.7042 -3.5651 -0.8790 11 1 5.7132 -1.8504 -2.2788 12 1 6.7645 -1.2444 -0.1792 13 6 4.5862 -2.9372 1.4208 14 8 4.2263 -4.0345 1.7918 15 7 5.2114 -2.1072 2.2790 16 6 5.3746 -2.4787 3.6181 17 6 5.6045 -3.8079 3.9485 18 6 5.7646 -4.1714 5.2711 19 6 5.6968 -3.2134 6.2662 20 6 5.8714 -3.6138 7.7085 21 1 5.3999 -2.8706 8.3515 22 6 5.2434 -4.9261 7.9330 23 7 4.7573 -5.9386 8.1069 24 6 7.3409 -3.6981 8.0320 25 6 8.1681 -4.5131 7.2820 26 6 9.5168 -4.5871 7.5760 27 6 10.0366 -3.8531 8.6257 28 6 9.2085 -3.0423 9.3791 29 6 7.8606 -2.9649 9.0823 30 6 5.4633 -1.8899 5.9409 31 6 5.3075 -1.5190 4.6197 32 6 2.1981 -1.1969 -0.0042 33 1 -0.3633 0.0000 -1.0277 34 1 -0.3633 -0.8899 0.5139 35 1 -0.3633 0.8900 0.5138 36 1 1.6583 2.1327 -0.0004 37 1 4.1205 2.1326 0.0001 38 1 5.3517 0.0000 0.0005 39 1 5.5482 -1.2522 1.9684 40 1 5.6579 -4.5564 3.1718 41 1 5.9438 -5.2049 5.5287 42 1 7.7611 -5.0897 6.4644 43 1 10.1638 -5.2204 6.9873 44 1 11.0899 -3.9131 8.8572 45 1 9.6145 -2.4692 10.1995 46 1 7.2135 -2.3312 9.6708 47 1 5.4068 -1.1447 6.7207 48 1 5.1292 -0.4845 4.3660 49 1 1.6581 -2.1322 -0.0084 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353491621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 03:58:02 Heat of formation + Delta-G solvation = 11.731075 kcal Electronic energy + Delta-G solvation = -33839.747875 eV Core-core repulsion = 29468.602967 eV Total energy + Delta-G solvation = -4371.144908 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 385.146 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.38623 -39.54968 -38.65494 -37.82267 -36.58801 -34.49052 -33.25393 -32.70471 -31.56882 -31.22632 -30.66837 -29.64907 -28.84513 -27.05216 -26.36773 -24.39811 -23.24035 -22.40499 -22.15919 -21.74491 -21.09932 -20.28731 -18.91711 -18.00869 -17.20587 -16.97684 -16.28792 -15.94011 -15.69113 -15.48102 -14.93933 -14.61038 -14.48305 -14.24719 -14.01902 -13.98016 -13.67537 -13.56584 -13.45842 -13.33859 -13.27580 -13.15907 -12.77583 -12.70763 -12.60211 -12.42231 -12.33687 -12.22103 -11.98281 -11.77448 -11.61722 -11.33859 -11.27261 -11.09703 -10.90381 -10.64649 -10.45498 -10.36809 -9.95704 -9.69538 -9.62740 -9.15142 -9.05928 -8.97313 -8.66083 -7.99226 -7.78464 -7.61260 -6.13231 -5.60545 1.00883 1.17424 1.47920 1.63790 2.04007 2.19684 2.64079 2.68073 3.10231 3.20732 3.31207 3.44469 3.66841 3.85291 3.92421 4.03981 4.39485 4.50773 4.59554 4.61036 4.72600 4.79903 4.89461 4.95349 5.12538 5.19338 5.26862 5.39742 5.40884 5.50114 5.60437 5.68257 5.69766 5.73212 5.77090 5.82128 5.91653 5.98806 6.02551 6.16862 6.19776 6.20089 6.27980 6.30978 6.38340 6.43567 6.45375 6.54162 6.67887 6.73005 6.80260 6.83633 6.88689 6.94224 7.15107 7.35251 7.43180 7.48592 7.62426 7.85201 8.20994 9.17292 9.78874 Molecular weight = 385.15amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.002221 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.548183 B =12603.308563 C =12944.976927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.121 4.121 5 C -0.164 4.164 6 C -0.058 4.058 7 C 0.026 3.974 8 O -0.804 6.804 9 Si 0.931 3.069 10 H -0.276 1.276 11 H -0.266 1.266 12 H -0.294 1.294 13 C 0.488 3.512 14 O -0.510 6.510 15 N -0.690 5.690 16 C 0.177 3.823 17 C -0.124 4.124 18 C -0.088 4.088 19 C -0.123 4.123 20 C 0.102 3.898 21 H 0.127 0.873 22 C 0.216 3.784 23 N -0.425 5.425 24 C -0.078 4.078 25 C -0.100 4.100 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.121 4.121 29 C -0.105 4.105 30 C -0.080 4.080 31 C -0.156 4.156 32 C -0.079 4.079 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.404 0.596 40 H 0.141 0.859 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.127 0.873 47 H 0.126 0.874 48 H 0.127 0.873 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.996 9.815 16.249 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.101 4.101 3 C -0.163 4.163 4 C -0.139 4.139 5 C -0.182 4.182 6 C -0.059 4.059 7 C -0.078 4.078 8 O -0.747 6.747 9 Si 0.759 3.241 10 H -0.202 1.202 11 H -0.190 1.190 12 H -0.223 1.223 13 C 0.279 3.721 14 O -0.383 6.383 15 N -0.339 5.339 16 C 0.080 3.920 17 C -0.145 4.145 18 C -0.107 4.107 19 C -0.125 4.125 20 C 0.080 3.920 21 H 0.144 0.856 22 C -0.102 4.102 23 N -0.100 5.100 24 C -0.079 4.079 25 C -0.118 4.118 26 C -0.136 4.136 27 C -0.135 4.135 28 C -0.139 4.139 29 C -0.123 4.123 30 C -0.098 4.098 31 C -0.177 4.177 32 C -0.097 4.097 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.240 0.760 40 H 0.159 0.841 41 H 0.134 0.866 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.145 0.855 47 H 0.144 0.856 48 H 0.145 0.855 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.493 7.320 16.052 19.580 hybrid contribution 0.196 0.917 -0.173 0.953 sum 8.689 8.237 15.879 19.887 Atomic orbital electron populations 1.20717 0.92117 1.01928 1.01691 1.19967 0.95529 0.93560 1.01018 1.20757 0.94177 0.96691 1.04652 1.20880 0.94165 0.97156 1.01695 1.21222 0.99652 0.92793 1.04502 1.21388 0.95214 0.95995 0.93283 1.22625 1.03473 0.92995 0.88724 1.95106 1.64046 1.47511 1.68076 0.86565 0.78040 0.76844 0.82685 1.20176 1.19021 1.22322 1.24368 0.73953 0.84623 0.89116 1.90464 1.48963 1.21563 1.77294 1.44650 1.59172 1.23210 1.06869 1.18148 0.94904 0.93643 0.85255 1.21338 1.00204 0.96182 0.96753 1.20818 0.99152 0.98387 0.92330 1.19041 1.07385 0.94424 0.91642 1.16523 0.91501 0.87660 0.96280 0.85551 1.28793 0.93602 0.94547 0.93299 1.81244 1.08837 1.11415 1.08487 1.19373 0.93015 0.98764 0.96782 1.21170 0.93709 0.97907 0.98965 1.21167 0.95178 0.99580 0.97655 1.21205 0.99842 0.96743 0.95672 1.21111 0.93583 0.99293 0.99963 1.21026 0.95687 0.99103 0.96483 1.20568 0.98993 0.94474 0.95802 1.20907 1.05407 0.99418 0.91936 1.20993 0.94311 0.97075 0.97297 0.91775 0.91834 0.92371 0.87328 0.87068 0.86573 0.75986 0.84092 0.86648 0.85713 0.85854 0.86076 0.85867 0.85523 0.85647 0.85538 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.01 36.01 0.36 -1.27 16 2 C -0.10 -1.90 5.88 -104.62 -0.62 -2.51 16 3 C -0.14 -2.42 9.70 -39.58 -0.38 -2.80 16 4 C -0.12 -2.02 10.05 -39.58 -0.40 -2.42 16 5 C -0.16 -3.18 7.71 -39.58 -0.31 -3.48 16 6 C -0.06 -1.36 4.40 -104.63 -0.46 -1.82 16 7 C 0.03 0.69 0.70 -29.04 -0.02 0.67 16 8 O -0.80 -27.36 16.18 -55.09 -0.89 -28.25 16 9 Si 0.93 22.07 24.23 -169.99 -4.12 17.95 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -5.67 6.38 56.52 0.36 -5.30 16 13 C 0.49 12.52 5.78 -10.99 -0.06 12.45 16 14 O -0.51 -14.83 13.98 -14.31 -0.20 -15.03 16 15 N -0.69 -13.91 4.89 -9.86 -0.05 -13.96 16 16 C 0.18 3.19 6.29 -83.69 -0.53 2.66 16 17 C -0.12 -2.29 8.69 -39.40 -0.34 -2.63 16 18 C -0.09 -1.32 7.86 -39.61 -0.31 -1.63 16 19 C -0.12 -1.50 4.63 -104.59 -0.48 -1.99 16 20 C 0.10 0.99 2.62 -95.71 -0.25 0.74 16 21 H 0.13 0.83 7.77 -51.92 -0.40 0.42 16 22 C 0.22 2.73 12.98 -20.74 -0.27 2.46 16 23 N -0.42 -6.49 18.54 42.17 0.78 -5.71 16 24 C -0.08 -0.74 4.75 -104.62 -0.50 -1.23 16 25 C -0.10 -1.03 8.87 -39.58 -0.35 -1.38 16 26 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 27 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 28 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 29 C -0.10 -0.80 9.67 -39.58 -0.38 -1.19 16 30 C -0.08 -0.92 9.66 -39.61 -0.38 -1.31 16 31 C -0.16 -2.19 9.97 -39.39 -0.39 -2.58 16 32 C -0.08 -1.83 9.00 -39.58 -0.36 -2.19 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 35 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.12 2.05 5.25 -52.49 -0.28 1.77 16 39 H 0.40 7.09 7.07 -40.82 -0.29 6.80 16 40 H 0.14 2.99 6.27 -52.48 -0.33 2.66 16 41 H 0.12 1.65 6.47 -52.49 -0.34 1.31 16 42 H 0.12 1.36 6.07 -52.48 -0.32 1.04 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.13 0.65 7.95 -52.49 -0.42 0.23 16 47 H 0.13 1.01 8.05 -52.48 -0.42 0.59 16 48 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 49 H 0.13 3.32 7.48 -52.48 -0.39 2.92 16 LS Contribution 412.85 15.07 6.22 6.22 Total: -1.00 -37.08 412.85 -11.70 -48.78 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.82 Total: 5.53 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -7.63 Total: -15.53 kcal Atomic # 7 Polarization: -20.40 SS G_CDS: 0.73 Total: -19.67 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.09 Total: -43.29 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.12 Total: 17.95 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -37.08 -11.70 -48.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353491621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.516 kcal (2) G-P(sol) polarization free energy of solvation -37.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds