Wall clock time and date at job start Fri Mar 27 2020 03:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 119.99950 * 2 1 4 4 C 1.38213 * 120.00085 * 179.97438 * 3 2 1 5 5 C 1.38265 * 119.99984 * 0.02562 * 4 3 2 6 6 C 1.38210 * 119.99710 * 359.96396 * 5 4 3 7 7 C 1.50699 * 119.99959 * 179.97438 * 6 5 4 8 8 O 1.42902 * 109.47377 * 209.99931 * 7 6 5 9 9 Si 1.86299 * 109.47238 * 329.99807 * 7 6 5 10 10 H 1.48497 * 109.47255 * 179.97438 * 9 7 6 11 11 H 1.48497 * 109.47035 * 300.00135 * 9 7 6 12 12 H 1.48499 * 109.46973 * 59.99980 * 9 7 6 13 13 C 1.50700 * 109.47233 * 89.99733 * 7 6 5 14 14 O 1.21289 * 119.99928 * 124.99800 * 13 7 6 15 15 N 1.34776 * 119.99874 * 305.00373 * 13 7 6 16 16 C 1.39922 * 119.99804 * 176.19694 * 15 13 7 17 17 C 1.38873 * 120.07599 * 35.28901 * 16 15 13 18 18 C 1.38104 * 119.93440 * 180.02562 * 17 16 15 19 19 C 1.38290 * 120.07001 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.92690 * 179.97438 * 19 18 17 21 21 H 1.09010 * 109.46825 * 203.08126 * 20 19 18 22 22 C 1.47201 * 109.47491 * 323.07715 * 20 19 18 23 23 N 9.46455 * 106.07536 * 117.00059 * 6 1 2 24 24 C 1.50698 * 109.47285 * 83.08481 * 20 19 18 25 25 C 1.38239 * 119.99655 * 304.28557 * 24 20 19 26 26 C 1.38241 * 120.00058 * 179.78954 * 25 24 20 27 27 C 1.38237 * 119.99423 * 0.43765 * 26 25 24 28 28 C 1.38229 * 120.00610 * 359.81707 * 27 26 25 29 29 C 1.38234 * 120.00326 * 124.55642 * 24 20 19 30 30 C 1.38278 * 120.13808 * 0.25508 * 19 18 17 31 31 C 1.38108 * 120.07371 * 359.49455 * 30 19 18 32 32 C 1.38211 * 120.00145 * 180.20281 * 2 1 3 33 33 H 1.08999 * 109.46942 * 90.00202 * 1 2 3 34 34 H 1.08998 * 109.47048 * 210.00761 * 1 2 3 35 35 H 1.08999 * 109.47166 * 330.00250 * 1 2 3 36 36 H 1.08004 * 120.00161 * 359.97438 * 3 2 1 37 37 H 1.07998 * 120.00445 * 179.97438 * 4 3 2 38 38 H 1.07992 * 120.00180 * 179.97438 * 5 4 3 39 39 H 0.97005 * 120.00171 * 356.19351 * 15 13 7 40 40 H 1.08003 * 120.02817 * 0.02562 * 17 16 15 41 41 H 1.08001 * 119.96737 * 180.02562 * 18 17 16 42 42 H 1.08004 * 119.99885 * 359.97438 * 25 24 20 43 43 H 1.07989 * 120.00008 * 180.27130 * 26 25 24 44 44 H 1.08007 * 119.99689 * 179.83182 * 27 26 25 45 45 H 1.07995 * 120.00819 * 179.97438 * 28 27 26 46 46 H 1.08001 * 119.99865 * 359.97438 * 29 24 20 47 47 H 1.08004 * 119.96026 * 179.74292 * 30 19 18 48 48 H 1.08001 * 120.03874 * 180.25148 * 31 30 19 49 49 H 1.08003 * 119.99793 * 0.05031 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1969 0.0008 7 6 4.3342 -2.5020 0.0002 8 8 3.5615 -3.4979 -0.6732 9 14 5.9615 -2.2792 -0.8790 10 1 6.7042 -3.5651 -0.8790 11 1 5.7132 -1.8504 -2.2788 12 1 6.7645 -1.2444 -0.1792 13 6 4.5862 -2.9372 1.4208 14 8 4.2263 -4.0345 1.7918 15 7 5.2114 -2.1072 2.2790 16 6 5.3746 -2.4787 3.6181 17 6 5.6045 -3.8079 3.9485 18 6 5.7646 -4.1714 5.2711 19 6 5.6968 -3.2134 6.2662 20 6 5.8714 -3.6138 7.7085 21 1 5.3999 -2.8706 8.3515 22 6 5.2434 -4.9261 7.9330 23 7 4.7573 -5.9386 8.1069 24 6 7.3409 -3.6981 8.0320 25 6 8.1681 -4.5131 7.2820 26 6 9.5168 -4.5871 7.5760 27 6 10.0366 -3.8531 8.6257 28 6 9.2085 -3.0423 9.3791 29 6 7.8606 -2.9649 9.0823 30 6 5.4633 -1.8899 5.9409 31 6 5.3075 -1.5190 4.6197 32 6 2.1981 -1.1969 -0.0042 33 1 -0.3633 0.0000 -1.0277 34 1 -0.3633 -0.8899 0.5139 35 1 -0.3633 0.8900 0.5138 36 1 1.6583 2.1327 -0.0004 37 1 4.1205 2.1326 0.0001 38 1 5.3517 0.0000 0.0005 39 1 5.5482 -1.2522 1.9684 40 1 5.6579 -4.5564 3.1718 41 1 5.9438 -5.2049 5.5287 42 1 7.7611 -5.0897 6.4644 43 1 10.1638 -5.2204 6.9873 44 1 11.0899 -3.9131 8.8572 45 1 9.6145 -2.4692 10.1995 46 1 7.2135 -2.3312 9.6708 47 1 5.4068 -1.1447 6.7207 48 1 5.1292 -0.4845 4.3660 49 1 1.6581 -2.1322 -0.0084 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353491621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 03:58:00 Heat of formation + Delta-G solvation = -12.098170 kcal Electronic energy + Delta-G solvation = -33840.781189 eV Core-core repulsion = 29468.602967 eV Total energy + Delta-G solvation = -4372.178222 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 385.146 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.61726 -40.76696 -39.97770 -39.16118 -37.72627 -35.92660 -34.85025 -33.93050 -33.11690 -32.04842 -31.63919 -30.75225 -30.61950 -28.25633 -27.67481 -26.10477 -24.26418 -23.38302 -23.23340 -22.74565 -22.42402 -21.75546 -20.63735 -18.92170 -18.60850 -17.91776 -17.73210 -17.23464 -16.83343 -16.55169 -16.38862 -15.88812 -15.65293 -15.49041 -15.31769 -15.12079 -15.05694 -14.82184 -14.72839 -14.43006 -14.34685 -14.24020 -14.09219 -13.99711 -13.88765 -13.72583 -13.44995 -13.37367 -13.15772 -13.03523 -12.79428 -12.60499 -12.39629 -12.34624 -12.21253 -12.04351 -11.89671 -11.78901 -11.69831 -11.40684 -11.17698 -10.86528 -9.87714 -9.75612 -9.71464 -9.51360 -9.36015 -9.00188 -8.44248 -7.85405 0.17077 0.43405 0.46229 0.54715 0.56814 0.67513 1.14178 1.26089 1.39475 1.64787 1.67870 1.85753 2.25967 2.51298 2.69333 2.89579 3.06414 3.10718 3.72958 3.76378 3.88228 4.02287 4.09355 4.10247 4.18289 4.21354 4.29803 4.31952 4.40287 4.40841 4.45427 4.53496 4.62673 4.66357 4.69696 4.74041 4.79292 4.80662 4.81833 5.01815 5.04969 5.07531 5.09368 5.21335 5.26989 5.34590 5.39653 5.47526 5.49799 5.60659 5.64257 5.67999 5.68910 5.69126 5.81245 6.05158 6.08983 6.14255 6.33702 6.46828 6.55769 7.32602 7.78616 Molecular weight = 385.15amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.002221 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.548183 B =12603.308563 C =12944.976927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C -0.133 4.133 4 C -0.100 4.100 5 C -0.167 4.167 6 C -0.085 4.085 7 C -0.028 4.028 8 O -0.899 6.899 9 Si 0.960 3.040 10 H -0.311 1.311 11 H -0.270 1.270 12 H -0.204 1.204 13 C 0.487 3.513 14 O -0.571 6.571 15 N -0.672 5.672 16 C 0.137 3.863 17 C -0.156 4.156 18 C -0.096 4.096 19 C -0.104 4.104 20 C 0.108 3.892 21 H 0.181 0.819 22 C 0.235 3.765 23 N -0.482 5.482 24 C -0.090 4.090 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.119 4.119 28 C -0.122 4.122 29 C -0.095 4.095 30 C -0.060 4.060 31 C -0.141 4.141 32 C -0.125 4.125 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.139 0.861 39 H 0.418 0.582 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.124 0.876 44 H 0.140 0.860 45 H 0.153 0.847 46 H 0.165 0.835 47 H 0.187 0.813 48 H 0.159 0.841 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.859 17.714 20.432 29.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.117 4.117 5 C -0.185 4.185 6 C -0.086 4.086 7 C -0.127 4.127 8 O -0.845 6.845 9 Si 0.784 3.216 10 H -0.239 1.239 11 H -0.195 1.195 12 H -0.128 1.128 13 C 0.278 3.722 14 O -0.449 6.449 15 N -0.322 5.322 16 C 0.042 3.958 17 C -0.176 4.176 18 C -0.115 4.115 19 C -0.106 4.106 20 C 0.087 3.913 21 H 0.198 0.802 22 C -0.082 4.082 23 N -0.158 5.158 24 C -0.091 4.091 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.137 4.137 28 C -0.140 4.140 29 C -0.113 4.113 30 C -0.078 4.078 31 C -0.161 4.161 32 C -0.144 4.144 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.175 0.825 37 H 0.184 0.816 38 H 0.156 0.844 39 H 0.256 0.744 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.142 0.858 44 H 0.158 0.842 45 H 0.171 0.829 46 H 0.183 0.817 47 H 0.204 0.796 48 H 0.177 0.823 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.400 15.308 20.296 27.466 hybrid contribution -0.345 -1.537 -1.312 2.050 sum 10.055 13.771 18.984 25.517 Atomic orbital electron populations 1.20784 0.89871 1.03020 1.02678 1.20303 0.97376 0.92746 0.99622 1.21300 0.94685 0.97122 1.01949 1.21456 0.94353 0.97853 0.98062 1.21365 1.00684 0.91963 1.04457 1.21035 0.95239 0.95885 0.96483 1.23522 1.06380 0.93379 0.89467 1.94993 1.67590 1.51054 1.70886 0.86114 0.75790 0.77707 0.81987 1.23906 1.19538 1.12820 1.24019 0.74048 0.84328 0.89760 1.90424 1.51912 1.24110 1.78449 1.44030 1.58122 1.22527 1.07496 1.18412 0.98131 0.94378 0.84885 1.21086 1.03249 0.96120 0.97178 1.20788 0.99763 0.99113 0.91798 1.19357 1.04508 0.94375 0.92372 1.16856 0.92279 0.87066 0.95054 0.80190 1.29440 0.92263 0.94765 0.91732 1.81263 1.10933 1.13235 1.10348 1.19341 0.92174 0.99686 0.97887 1.21201 0.94796 0.99020 0.99411 1.21309 0.94887 1.00505 0.98735 1.21520 1.01148 0.96128 0.94904 1.21531 0.93540 0.98728 1.00185 1.21419 0.96313 0.98247 0.95334 1.21186 0.95700 0.94859 0.96057 1.21276 1.03358 0.99759 0.91737 1.20793 0.94905 0.96868 1.01809 0.90780 0.93433 0.88538 0.82475 0.81588 0.84394 0.74366 0.89108 0.87567 0.88061 0.85826 0.84192 0.82917 0.81741 0.79581 0.82311 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.13 10.01 71.24 0.71 -2.42 16 2 C -0.10 -3.71 5.88 -19.87 -0.12 -3.83 16 3 C -0.13 -3.79 9.70 22.27 0.22 -3.57 16 4 C -0.10 -2.76 10.05 22.27 0.22 -2.53 16 5 C -0.17 -6.03 7.71 22.27 0.17 -5.85 16 6 C -0.09 -4.20 4.40 -19.87 -0.09 -4.29 16 7 C -0.03 -1.63 0.70 29.10 0.02 -1.61 16 8 O -0.90 -68.62 16.18 -129.99 -2.10 -70.72 16 9 Si 0.96 46.48 24.23 68.60 1.66 48.14 16 10 H -0.31 -16.68 7.11 99.48 0.71 -15.97 16 11 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.20 -6.91 6.38 99.48 0.63 -6.28 16 13 C 0.49 27.31 5.78 87.66 0.51 27.81 16 14 O -0.57 -37.68 13.98 15.93 0.22 -37.45 16 15 N -0.67 -28.06 4.89 -303.50 -1.48 -29.55 16 16 C 0.14 5.04 6.29 38.16 0.24 5.28 16 17 C -0.16 -6.33 8.69 22.39 0.19 -6.14 16 18 C -0.10 -3.06 7.86 22.25 0.17 -2.89 16 19 C -0.10 -2.30 4.63 -19.84 -0.09 -2.40 16 20 C 0.11 1.72 2.62 -14.09 -0.04 1.68 16 21 H 0.18 1.04 7.77 -2.38 -0.02 1.02 16 22 C 0.24 5.74 12.98 89.44 1.16 6.90 16 23 N -0.48 -15.11 18.54 20.01 0.37 -14.74 16 24 C -0.09 -1.41 4.75 -19.87 -0.09 -1.50 16 25 C -0.13 -2.58 8.87 22.27 0.20 -2.38 16 26 C -0.14 -2.40 10.05 22.27 0.22 -2.18 16 27 C -0.12 -1.55 10.05 22.27 0.22 -1.32 16 28 C -0.12 -1.21 10.05 22.27 0.22 -0.99 16 29 C -0.10 -0.95 9.67 22.27 0.22 -0.73 16 30 C -0.06 -1.08 9.66 22.25 0.21 -0.87 16 31 C -0.14 -3.49 9.97 22.39 0.22 -3.26 16 32 C -0.13 -6.28 9.00 22.27 0.20 -6.08 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.51 8.09 -2.39 -0.02 1.49 16 35 H 0.10 2.07 8.09 -2.39 -0.02 2.05 16 36 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 37 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.14 4.22 5.25 -2.91 -0.02 4.20 16 39 H 0.42 14.16 7.07 -92.70 -0.66 13.51 16 40 H 0.09 4.54 6.27 -2.91 -0.02 4.53 16 41 H 0.11 3.46 6.47 -2.91 -0.02 3.44 16 42 H 0.10 2.46 6.07 -2.91 -0.02 2.44 16 43 H 0.12 1.99 8.06 -2.92 -0.02 1.97 16 44 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 46 H 0.17 0.39 7.95 -2.91 -0.02 0.37 16 47 H 0.19 1.27 8.05 -2.91 -0.02 1.25 16 48 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 49 H 0.07 4.15 7.48 -2.91 -0.02 4.13 16 Total: -1.00 -103.82 412.85 4.62 -99.20 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.04 Total: 18.29 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 4.92 Total: -13.17 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -1.11 Total: -44.29 kcal Atomic # 8 Polarization: -106.29 SS G_CDS: -1.88 Total: -108.17 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.66 Total: 48.14 kcal Total: -103.82 4.62 -99.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353491621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.101 kcal (2) G-P(sol) polarization free energy of solvation -103.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds