Wall clock time and date at job start Fri Mar 27 2020 04:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99871 * 2 1 4 4 C 1.38211 * 119.99948 * 180.02562 * 3 2 1 5 5 C 1.38268 * 119.99653 * 359.95622 * 4 3 2 6 6 C 1.38208 * 120.00402 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00298 * 180.02562 * 6 5 4 8 8 O 1.42905 * 109.46734 * 30.00265 * 7 6 5 9 9 Si 1.86301 * 109.47151 * 149.99813 * 7 6 5 10 10 H 1.48500 * 109.47141 * 60.00291 * 9 7 6 11 11 H 1.48497 * 109.47328 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47177 * 299.99984 * 9 7 6 13 13 C 1.50693 * 109.47492 * 270.00110 * 7 6 5 14 14 O 1.21288 * 120.00532 * 124.99728 * 13 7 6 15 15 N 1.34777 * 119.99954 * 305.00071 * 13 7 6 16 16 C 1.39919 * 120.00182 * 176.18874 * 15 13 7 17 17 C 1.38872 * 120.07267 * 215.01173 * 16 15 13 18 18 C 1.38118 * 119.93333 * 179.74513 * 17 16 15 19 19 C 1.38285 * 120.06315 * 0.53285 * 18 17 16 20 20 C 1.50702 * 119.92341 * 179.76664 * 19 18 17 21 21 H 1.09006 * 109.46926 * 156.86626 * 20 19 18 22 22 C 1.47195 * 109.47390 * 36.86425 * 20 19 18 23 23 N 9.83302 * 105.29181 * 255.96137 * 2 1 3 24 24 C 1.50699 * 109.46958 * 276.86230 * 20 19 18 25 25 C 1.38234 * 120.00104 * 55.17963 * 24 20 19 26 26 C 1.38235 * 119.99902 * 179.78533 * 25 24 20 27 27 C 1.38235 * 120.00162 * 0.44252 * 26 25 24 28 28 C 1.38237 * 119.99920 * 359.81086 * 27 26 25 29 29 C 1.38239 * 119.99785 * 235.44931 * 24 20 19 30 30 C 1.38276 * 120.14626 * 359.74270 * 19 18 17 31 31 C 1.38114 * 120.07164 * 359.97438 * 30 19 18 32 32 C 1.38217 * 120.00103 * 179.73163 * 2 1 3 33 33 H 1.09000 * 109.47549 * 89.99333 * 1 2 3 34 34 H 1.09000 * 109.47201 * 209.99833 * 1 2 3 35 35 H 1.09003 * 109.47127 * 329.99942 * 1 2 3 36 36 H 1.07996 * 119.99989 * 359.97438 * 3 2 1 37 37 H 1.07990 * 120.00358 * 179.97438 * 4 3 2 38 38 H 1.08006 * 119.99913 * 180.02562 * 5 4 3 39 39 H 0.97002 * 119.99651 * 356.18025 * 15 13 7 40 40 H 1.08006 * 120.03237 * 0.02656 * 17 16 15 41 41 H 1.07994 * 119.96398 * 180.27487 * 18 17 16 42 42 H 1.07998 * 119.99795 * 359.97438 * 25 24 20 43 43 H 1.08005 * 120.00143 * 180.27169 * 26 25 24 44 44 H 1.07994 * 120.00200 * 179.83289 * 27 26 25 45 45 H 1.07995 * 119.99969 * 180.02562 * 28 27 26 46 46 H 1.07993 * 120.00401 * 359.97438 * 29 24 20 47 47 H 1.08002 * 119.96580 * 180.02562 * 30 19 18 48 48 H 1.08001 * 120.03855 * 180.02562 * 31 30 19 49 49 H 1.08006 * 119.99881 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2716 -0.0001 -0.0002 6 6 3.5806 -1.1970 0.0002 7 6 4.3341 -2.5021 0.0012 8 8 5.5824 -2.3308 0.6753 9 14 3.3269 -3.7999 0.8798 10 1 2.0296 -3.9779 0.1794 11 1 4.0696 -5.0859 0.8814 12 1 3.0789 -3.3705 2.2796 13 6 4.5858 -2.9379 -1.4192 14 8 5.7162 -3.1749 -1.7896 15 7 3.5549 -3.0644 -2.2780 16 6 3.7958 -3.3913 -3.6170 17 6 2.9955 -2.8576 -4.6185 18 6 3.2392 -3.1781 -5.9397 19 6 4.2720 -4.0383 -6.2647 20 6 4.5318 -4.3901 -7.7069 21 1 5.5668 -4.7121 -7.8216 22 6 4.2889 -3.2093 -8.5514 23 7 4.1003 -2.3008 -9.2016 24 6 3.6093 -5.5057 -8.1258 25 6 2.2424 -5.3664 -7.9733 26 6 1.3960 -6.3880 -8.3617 27 6 1.9169 -7.5525 -8.8942 28 6 3.2841 -7.6938 -9.0419 29 6 4.1303 -6.6705 -8.6575 30 6 5.0671 -4.5760 -5.2694 31 6 4.8323 -4.2548 -3.9468 32 6 2.1981 -1.1970 0.0056 33 1 -0.3634 0.0001 -1.0276 34 1 -0.3633 -0.8900 0.5138 35 1 -0.3633 0.8900 0.5139 36 1 1.6582 2.1326 -0.0004 37 1 4.1204 2.1326 -0.0010 38 1 5.3517 -0.0001 -0.0002 39 1 2.6459 -2.9288 -1.9679 40 1 2.1861 -2.1889 -4.3649 41 1 2.6199 -2.7598 -6.7193 42 1 1.8357 -4.4583 -7.5535 43 1 0.3278 -6.2775 -8.2466 44 1 1.2558 -8.3516 -9.1951 45 1 3.6910 -8.6034 -9.4583 46 1 5.1984 -6.7809 -8.7731 47 1 5.8733 -5.2472 -5.5266 48 1 5.4540 -4.6748 -3.1699 49 1 1.6580 -2.1323 0.0104 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353491622.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 04:00:17 Heat of formation + Delta-G solvation = -9.908412 kcal Electronic energy + Delta-G solvation = -33907.986939 eV Core-core repulsion = 29535.903672 eV Total energy + Delta-G solvation = -4372.083267 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 385.146 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.61919 -40.77683 -40.00439 -39.15927 -37.75665 -35.92158 -34.80574 -33.98725 -32.99204 -32.05512 -31.64632 -31.06597 -30.60341 -28.10760 -27.50484 -26.10843 -24.24285 -23.51034 -23.13152 -22.80176 -22.42803 -21.97936 -20.44968 -18.98758 -18.50269 -17.93659 -17.67025 -17.17593 -16.87445 -16.72473 -16.36795 -15.91597 -15.71033 -15.53249 -15.32837 -15.07235 -14.98815 -14.82557 -14.70205 -14.41263 -14.30653 -14.23457 -14.11620 -14.01699 -13.83135 -13.76854 -13.46038 -13.39807 -13.03097 -13.01437 -12.76929 -12.61889 -12.37865 -12.26609 -12.14552 -12.04794 -11.96395 -11.78981 -11.75866 -11.42800 -11.15629 -10.85053 -9.89230 -9.74739 -9.70698 -9.60936 -9.33287 -9.00628 -8.42785 -7.84122 0.17295 0.41423 0.46714 0.53762 0.57788 0.60199 1.16040 1.27993 1.40504 1.67155 1.71119 1.85939 2.25015 2.51166 2.69099 2.89033 3.02788 3.08306 3.72524 3.77445 3.88574 4.01932 4.05017 4.09381 4.11992 4.22386 4.26621 4.32463 4.38820 4.44320 4.46204 4.51282 4.61408 4.65032 4.69441 4.75859 4.79510 4.81949 4.95605 4.98109 5.06758 5.09007 5.09432 5.21580 5.24526 5.28796 5.42777 5.46490 5.49861 5.60932 5.62966 5.67357 5.68871 5.69543 5.76373 6.01967 6.07304 6.14438 6.28987 6.46896 6.54379 7.31669 7.78633 Molecular weight = 385.15amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.002297 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.715592 B =12187.583622 C =12621.507128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.081 4.081 3 C -0.134 4.134 4 C -0.121 4.121 5 C -0.131 4.131 6 C -0.082 4.082 7 C -0.026 4.026 8 O -0.895 6.895 9 Si 0.961 3.039 10 H -0.212 1.212 11 H -0.303 1.303 12 H -0.272 1.272 13 C 0.489 3.511 14 O -0.563 6.563 15 N -0.674 5.674 16 C 0.138 3.862 17 C -0.146 4.146 18 C -0.087 4.087 19 C -0.102 4.102 20 C 0.106 3.894 21 H 0.162 0.838 22 C 0.240 3.760 23 N -0.470 5.470 24 C -0.092 4.092 25 C -0.119 4.119 26 C -0.131 4.131 27 C -0.121 4.121 28 C -0.126 4.126 29 C -0.105 4.105 30 C -0.072 4.072 31 C -0.149 4.149 32 C -0.162 4.162 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.154 0.846 37 H 0.134 0.866 38 H 0.075 0.925 39 H 0.415 0.585 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.119 0.881 43 H 0.134 0.866 44 H 0.140 0.860 45 H 0.146 0.854 46 H 0.152 0.848 47 H 0.157 0.843 48 H 0.107 0.893 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.687 -7.038 -17.545 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.081 4.081 3 C -0.152 4.152 4 C -0.139 4.139 5 C -0.149 4.149 6 C -0.084 4.084 7 C -0.126 4.126 8 O -0.841 6.841 9 Si 0.784 3.216 10 H -0.136 1.136 11 H -0.230 1.230 12 H -0.197 1.197 13 C 0.280 3.720 14 O -0.441 6.441 15 N -0.324 5.324 16 C 0.043 3.957 17 C -0.166 4.166 18 C -0.106 4.106 19 C -0.104 4.104 20 C 0.085 3.915 21 H 0.180 0.820 22 C -0.078 4.078 23 N -0.146 5.146 24 C -0.093 4.093 25 C -0.137 4.137 26 C -0.149 4.149 27 C -0.139 4.139 28 C -0.144 4.144 29 C -0.123 4.123 30 C -0.090 4.090 31 C -0.170 4.170 32 C -0.180 4.180 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.172 0.828 37 H 0.152 0.848 38 H 0.094 0.906 39 H 0.253 0.747 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.137 0.863 43 H 0.152 0.848 44 H 0.158 0.842 45 H 0.164 0.836 46 H 0.170 0.830 47 H 0.175 0.825 48 H 0.125 0.875 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.371 -6.338 -18.132 23.989 hybrid contribution 1.028 0.141 0.977 1.425 sum -13.343 -6.197 -17.155 22.600 Atomic orbital electron populations 1.20839 0.87994 1.03891 1.03591 1.20268 0.97916 0.92015 0.97951 1.21262 0.93035 0.98747 1.02165 1.21360 0.95653 0.96804 1.00108 1.20922 0.99021 0.93546 1.01453 1.21063 0.94294 0.96903 0.96096 1.23483 1.01435 0.98033 0.89672 1.94996 1.26663 1.91689 1.70790 0.86085 0.76552 0.77136 0.81832 1.13617 1.23019 1.19711 1.23922 0.84165 0.74307 0.89573 1.90405 1.25094 1.50211 1.78342 1.44065 1.10865 1.69938 1.07489 1.18365 0.97632 0.95245 0.84413 1.21022 1.02179 1.01691 0.91711 1.20908 0.97096 0.97297 0.95269 1.19272 0.97677 1.00433 0.92988 1.16691 1.03287 0.85043 0.86516 0.82035 1.28955 0.92224 0.93788 0.92815 1.81106 1.09860 1.12133 1.11463 1.19338 0.93357 0.94859 1.01732 1.21251 0.93402 0.99750 0.99292 1.21375 1.00557 0.93864 0.99134 1.21539 0.96190 0.97816 0.98344 1.21481 0.93551 0.99618 0.99779 1.21374 1.01622 0.92139 0.97190 1.20987 0.99001 0.98908 0.90139 1.21274 0.99093 0.98633 0.98009 1.21225 0.92348 0.99539 1.04859 0.89520 0.90826 0.89859 0.82795 0.84832 0.90628 0.74717 0.83870 0.84774 0.86282 0.84780 0.84173 0.83593 0.82999 0.82501 0.87533 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 10.01 71.24 0.71 -1.35 16 2 C -0.08 -2.47 5.88 -19.86 -0.12 -2.58 16 3 C -0.13 -4.09 9.70 22.27 0.22 -3.88 16 4 C -0.12 -4.60 10.05 22.27 0.22 -4.37 16 5 C -0.13 -6.59 9.35 22.27 0.21 -6.38 16 6 C -0.08 -4.09 4.39 -19.87 -0.09 -4.18 16 7 C -0.03 -1.53 0.70 29.10 0.02 -1.51 16 8 O -0.90 -66.94 16.19 -129.99 -2.10 -69.04 16 9 Si 0.96 45.89 24.22 68.60 1.66 47.55 16 10 H -0.21 -7.25 6.38 99.48 0.64 -6.61 16 11 H -0.30 -15.68 7.11 99.48 0.71 -14.98 16 12 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 13 C 0.49 26.73 5.78 87.65 0.51 27.24 16 14 O -0.56 -35.43 13.98 15.93 0.22 -35.20 16 15 N -0.67 -28.07 4.89 -303.51 -1.49 -29.56 16 16 C 0.14 5.07 6.29 38.16 0.24 5.31 16 17 C -0.15 -4.14 9.97 22.39 0.22 -3.92 16 18 C -0.09 -2.09 7.84 22.25 0.17 -1.92 16 19 C -0.10 -2.26 4.62 -19.84 -0.09 -2.35 16 20 C 0.11 1.73 2.62 -14.09 -0.04 1.69 16 21 H 0.16 1.60 7.78 -2.38 -0.02 1.59 16 22 C 0.24 5.17 12.97 89.48 1.16 6.33 16 23 N -0.47 -12.67 18.52 19.97 0.37 -12.30 16 24 C -0.09 -1.44 4.75 -19.87 -0.09 -1.53 16 25 C -0.12 -2.03 8.88 22.27 0.20 -1.83 16 26 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 27 C -0.12 -1.51 10.05 22.27 0.22 -1.29 16 28 C -0.13 -1.46 10.05 22.27 0.22 -1.23 16 29 C -0.11 -1.29 9.67 22.27 0.22 -1.08 16 30 C -0.07 -1.88 9.66 22.25 0.22 -1.67 16 31 C -0.15 -5.49 8.69 22.39 0.19 -5.30 16 32 C -0.16 -6.11 7.38 22.27 0.16 -5.94 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 35 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 36 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 37 H 0.13 4.28 8.06 -2.92 -0.02 4.26 16 38 H 0.08 4.47 7.48 -2.91 -0.02 4.44 16 39 H 0.42 14.49 7.10 -92.71 -0.66 13.84 16 40 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.13 2.77 6.49 -2.91 -0.02 2.75 16 42 H 0.12 2.05 6.05 -2.91 -0.02 2.03 16 43 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16 44 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 45 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 46 H 0.15 1.03 7.95 -2.91 -0.02 1.01 16 47 H 0.16 3.02 8.05 -2.91 -0.02 3.00 16 48 H 0.11 4.71 6.27 -2.91 -0.02 4.69 16 49 H 0.14 4.41 5.26 -2.91 -0.02 4.40 16 Total: -1.00 -94.40 412.84 4.62 -89.78 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 1.03 Total: 22.23 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 4.92 Total: -13.45 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -1.12 Total: -41.86 kcal Atomic # 8 Polarization: -102.36 SS G_CDS: -1.88 Total: -104.25 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.66 Total: 47.55 kcal Total: -94.40 4.62 -89.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353491622.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.873 kcal (2) G-P(sol) polarization free energy of solvation -94.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds