Wall clock time and date at job start Fri Mar 27 2020 07:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33439 * 125.96683 * 2 1 4 4 N 1.31990 * 114.56715 * 179.97438 * 3 2 1 5 5 C 1.29621 * 116.91845 * 359.97438 * 4 3 2 6 6 N 1.38998 * 124.94653 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99850 * 0.02562 * 6 5 4 8 8 O 1.21280 * 120.00192 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99839 * 179.97438 * 7 6 5 10 10 O 1.42903 * 109.47135 * 180.02562 * 9 7 6 11 11 Si 1.86298 * 109.47533 * 300.00810 * 9 7 6 12 12 H 1.48499 * 109.47199 * 59.99774 * 11 9 7 13 13 H 1.48497 * 109.47136 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46930 * 299.99637 * 11 9 7 15 15 C 1.50704 * 109.47295 * 60.00812 * 9 7 6 16 16 C 1.34248 * 126.49496 * 0.02562 * 15 9 7 17 17 N 1.36832 * 109.92609 * 179.97438 * 16 15 9 18 18 C 1.46496 * 125.06043 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47144 * 265.02165 * 18 17 16 20 20 C 1.38359 * 119.84949 * 269.72713 * 19 18 17 21 21 C 1.37953 * 120.15424 * 179.76569 * 20 19 18 22 22 C 1.39634 * 119.83915 * 0.53207 * 21 20 19 23 23 C 1.43203 * 120.14634 * 179.70145 * 22 21 20 24 24 N 9.34083 * 99.30041 * 200.24748 * 5 1 2 25 25 C 1.39635 * 119.70502 * 359.71906 * 22 21 20 26 26 C 1.37946 * 119.84129 * 0.02562 * 25 22 21 27 27 C 1.37691 * 109.87505 * 359.97438 * 17 16 15 28 28 C 1.39122 * 133.50568 * 180.02562 * 27 17 16 29 29 C 1.37755 * 119.77850 * 179.30272 * 28 27 17 30 30 C 1.38839 * 120.66378 * 0.54895 * 29 28 27 31 31 C 1.36631 * 120.52615 * 359.66871 * 30 29 28 32 32 C 1.39628 * 119.76222 * 359.97438 * 31 30 29 33 33 S 1.70967 * 110.11117 * 359.75476 * 5 4 3 34 34 H 1.09002 * 109.47152 * 90.00095 * 1 2 3 35 35 H 1.09001 * 109.46980 * 330.00195 * 1 2 3 36 36 H 1.09004 * 109.47113 * 210.00176 * 1 2 3 37 37 H 1.08003 * 122.71877 * 0.02562 * 3 2 1 38 38 H 0.97003 * 120.00448 * 180.02562 * 6 5 4 39 39 H 1.07995 * 125.03720 * 359.92894 * 16 15 9 40 40 H 1.08999 * 109.47431 * 25.02382 * 18 17 16 41 41 H 1.09008 * 109.46984 * 145.02479 * 18 17 16 42 42 H 1.07999 * 119.92704 * 359.97438 * 20 19 18 43 43 H 1.07995 * 120.08281 * 180.25242 * 21 20 19 44 44 H 1.07995 * 120.07539 * 179.97438 * 25 22 21 45 45 H 1.08005 * 119.92473 * 180.02562 * 26 25 22 46 46 H 1.08000 * 120.11166 * 359.97438 * 28 27 17 47 47 H 1.07996 * 119.66943 * 180.19746 * 29 28 27 48 48 H 1.08000 * 119.73851 * 179.64840 * 30 29 28 49 49 H 1.07995 * 120.11571 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2907 1.0800 0.0000 4 7 3.5846 0.8191 0.0005 5 6 3.9314 -0.4298 0.0015 6 7 5.2423 -0.8922 0.0017 7 6 6.2660 -0.0155 0.0013 8 8 6.0435 1.1767 0.0013 9 6 7.6872 -0.5168 0.0021 10 8 8.5845 0.5954 0.0021 11 14 7.9803 -1.5506 1.5239 12 1 7.0478 -2.7063 1.5244 13 1 9.3809 -2.0440 1.5249 14 1 7.7461 -0.7250 2.7359 15 6 7.9251 -1.3546 -1.2278 16 6 7.0319 -1.6295 -2.1917 17 7 7.6076 -2.4192 -3.1494 18 6 6.9301 -2.9156 -4.3496 19 6 6.3935 -4.2993 -4.0876 20 6 7.1788 -5.4054 -4.3602 21 6 6.6957 -6.6747 -4.1182 22 6 5.4070 -6.8420 -3.6074 23 6 4.8966 -8.1569 -3.3598 24 7 4.4921 -9.2022 -3.1579 25 6 4.6180 -5.7215 -3.3395 26 6 5.1157 -4.4579 -3.5813 27 6 8.9185 -2.6778 -2.8170 28 6 9.9346 -3.4081 -3.4250 29 6 11.1790 -3.4693 -2.8374 30 6 11.4279 -2.8181 -1.6367 31 6 10.4432 -2.0991 -1.0201 32 6 9.1766 -2.0176 -1.6019 33 16 2.5418 -1.4258 0.0087 34 1 -0.3633 0.0000 -1.0277 35 1 -0.3633 0.8900 0.5138 36 1 -0.3633 -0.8900 0.5139 37 1 1.8982 2.0862 0.0004 38 1 5.4203 -1.8457 0.0021 39 1 6.0103 -1.2798 -2.2083 40 1 6.1063 -2.2487 -4.6040 41 1 7.6378 -2.9512 -5.1779 42 1 8.1734 -5.2747 -4.7601 43 1 7.3111 -7.5371 -4.3275 44 1 3.6202 -5.8440 -2.9448 45 1 4.5067 -3.5902 -3.3742 46 1 9.7515 -3.9164 -4.3602 47 1 11.9674 -4.0340 -3.3126 48 1 12.4075 -2.8807 -1.1862 49 1 10.6442 -1.5948 -0.0864 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772626388.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 07:44:48 Heat of formation + Delta-G solvation = 92.224819 kcal Electronic energy + Delta-G solvation = -38836.681038 eV Core-core repulsion = 34015.337125 eV Total energy + Delta-G solvation = -4821.343913 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 431.109 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.99510 -39.82458 -39.62276 -38.08850 -36.88924 -36.37891 -34.18845 -33.95225 -32.17338 -31.65875 -31.45484 -30.22784 -29.42413 -28.30797 -26.80467 -26.16174 -24.61871 -23.34496 -23.13012 -22.75156 -22.00781 -21.02614 -20.54932 -19.29127 -19.20123 -18.85576 -17.53309 -16.64953 -16.29102 -16.13881 -16.00401 -15.68741 -15.20909 -15.05568 -14.89804 -14.81460 -14.35151 -14.29459 -14.18064 -13.94284 -13.86756 -13.55634 -13.45166 -13.36967 -13.10729 -13.03451 -12.93807 -12.79300 -12.64641 -12.53436 -12.46087 -12.30091 -11.98324 -11.88124 -11.47155 -11.34622 -11.06567 -11.05823 -10.92648 -10.56190 -10.47625 -10.17579 -10.03680 -9.96888 -9.39145 -9.36343 -9.17989 -8.98947 -8.77147 -8.51736 -7.70723 -7.59678 -6.87918 -6.07658 -5.57640 0.37103 1.01029 1.07398 1.29491 1.71030 1.89479 2.16309 2.35405 2.55482 3.10406 3.18644 3.23380 3.27377 3.32926 3.45506 3.56460 3.63003 3.67157 3.88477 4.36481 4.38509 4.48066 4.52982 4.59790 4.80899 4.95375 4.97901 5.11853 5.14589 5.18952 5.21131 5.30156 5.38025 5.46432 5.47365 5.49009 5.58342 5.62917 5.77943 5.83620 5.91304 5.93707 5.99447 6.05638 6.15566 6.18474 6.29102 6.37419 6.44228 6.49352 6.70624 6.80384 6.94787 7.03063 7.17795 7.21312 7.40960 7.53955 7.74847 7.85097 7.88523 8.36687 9.16884 9.81440 Molecular weight = 431.11amu Principal moments of inertia in cm(-1) A = 0.004897 B = 0.003455 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5716.039731 B = 8102.865366 C =12320.007923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.266 4.266 3 C 0.074 3.926 4 N -0.486 5.486 5 C 0.299 3.701 6 N -0.647 5.647 7 C 0.472 3.528 8 O -0.457 6.457 9 C 0.068 3.932 10 O -0.793 6.793 11 Si 0.918 3.082 12 H -0.294 1.294 13 H -0.257 1.257 14 H -0.274 1.274 15 C -0.113 4.113 16 C -0.001 4.001 17 N -0.485 5.485 18 C 0.150 3.850 19 C -0.075 4.075 20 C -0.100 4.100 21 C -0.070 4.070 22 C -0.029 4.029 23 C 0.256 3.744 24 N -0.421 5.421 25 C -0.069 4.069 26 C -0.101 4.101 27 C 0.103 3.897 28 C -0.144 4.144 29 C -0.103 4.103 30 C -0.168 4.168 31 C -0.045 4.045 32 C -0.085 4.085 33 S 0.067 5.933 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.171 0.829 38 H 0.413 0.587 39 H 0.155 0.845 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.109 0.891 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.325 -11.832 -9.012 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.388 4.388 3 C -0.077 4.077 4 N -0.208 5.208 5 C -0.070 4.070 6 N -0.304 5.304 7 C 0.259 3.741 8 O -0.321 6.321 9 C -0.037 4.037 10 O -0.735 6.735 11 Si 0.744 3.256 12 H -0.223 1.223 13 H -0.181 1.181 14 H -0.199 1.199 15 C -0.121 4.121 16 C -0.121 4.121 17 N -0.171 5.171 18 C 0.028 3.972 19 C -0.077 4.077 20 C -0.118 4.118 21 C -0.090 4.090 22 C -0.033 4.033 23 C -0.059 4.059 24 N -0.096 5.096 25 C -0.089 4.089 26 C -0.120 4.120 27 C -0.003 4.003 28 C -0.164 4.164 29 C -0.122 4.122 30 C -0.187 4.187 31 C -0.064 4.064 32 C -0.090 4.090 33 S 0.316 5.684 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.188 0.812 38 H 0.251 0.749 39 H 0.172 0.828 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.153 0.847 46 H 0.127 0.873 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.479 -13.470 -8.219 17.913 hybrid contribution -0.302 0.917 -0.342 1.024 sum -8.781 -12.553 -8.561 17.550 Atomic orbital electron populations 1.20051 0.87236 1.02676 1.02156 1.25409 1.00655 0.93778 1.18980 1.21613 0.86509 0.99725 0.99838 1.66642 1.16601 1.16018 1.21496 1.24339 0.91805 0.91307 0.99597 1.45086 1.00516 1.11950 1.72869 1.25193 0.87550 0.87458 0.73887 1.90586 1.83534 1.16074 1.41946 1.21960 0.87776 0.98770 0.95205 1.95138 1.51946 1.35477 1.90902 0.86780 0.80695 0.75498 0.82596 1.22309 1.18143 1.19949 1.21913 0.91103 0.99210 0.99838 1.21540 0.99037 1.00653 0.90878 1.43648 1.08474 1.44880 1.20081 1.20554 0.98143 0.91229 0.87253 1.20513 0.94186 0.95812 0.97154 1.21034 0.99867 0.91270 0.99673 1.21149 0.93377 0.98071 0.96408 1.16019 0.95444 0.85926 1.05889 1.25867 0.93578 0.92871 0.93586 1.81382 1.08177 1.11223 1.08822 1.21169 0.99525 0.91022 0.97231 1.21039 0.95368 0.97282 0.98263 1.18204 0.84959 1.00739 0.96391 1.19771 0.92231 1.03777 1.00665 1.20635 0.95484 1.00101 0.95986 1.20522 0.99110 1.01948 0.97165 1.20561 0.91058 0.95386 0.99370 1.18997 0.94516 1.00493 0.95027 1.83715 0.98506 1.11793 1.74346 0.91377 0.90757 0.91763 0.81202 0.74911 0.82758 0.88400 0.88870 0.84814 0.84886 0.84753 0.84701 0.87346 0.86690 0.86794 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.41 36.01 0.37 -0.17 16 2 C -0.27 -3.48 6.58 -35.98 -0.24 -3.71 16 3 C 0.07 1.18 11.24 -19.16 -0.22 0.96 16 4 N -0.49 -9.98 8.65 -15.12 -0.13 -10.12 16 5 C 0.30 5.58 8.02 -87.35 -0.70 4.88 16 6 N -0.65 -12.96 3.68 -13.07 -0.05 -13.01 16 7 C 0.47 12.12 5.22 -10.98 -0.06 12.07 16 8 O -0.46 -13.73 15.13 -14.35 -0.22 -13.95 16 9 C 0.07 1.82 0.79 -29.03 -0.02 1.80 16 10 O -0.79 -26.92 17.19 -55.14 -0.95 -27.87 16 11 Si 0.92 21.77 25.03 -169.99 -4.25 17.52 16 12 H -0.29 -5.92 7.10 56.52 0.40 -5.52 16 13 H -0.26 -5.91 6.02 56.52 0.34 -5.57 16 14 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 15 C -0.11 -2.61 4.52 -102.71 -0.46 -3.07 16 16 C 0.00 -0.01 9.81 -16.73 -0.16 -0.18 16 17 N -0.48 -7.56 2.76 -115.71 -0.32 -7.88 16 18 C 0.15 1.56 6.12 -5.20 -0.03 1.53 16 19 C -0.07 -0.68 5.47 -104.53 -0.57 -1.26 16 20 C -0.10 -0.82 9.68 -39.64 -0.38 -1.21 16 21 C -0.07 -0.55 9.76 -39.16 -0.38 -0.93 16 22 C -0.03 -0.25 5.73 -106.93 -0.61 -0.87 16 23 C 0.26 2.65 15.34 -22.38 -0.34 2.30 16 24 N -0.42 -5.30 18.56 41.95 0.78 -4.52 16 25 C -0.07 -0.55 9.76 -39.17 -0.38 -0.93 16 26 C -0.10 -0.85 9.68 -39.64 -0.38 -1.24 16 27 C 0.10 1.79 6.81 -83.99 -0.57 1.22 16 28 C -0.14 -2.06 10.00 -39.43 -0.39 -2.46 16 29 C -0.10 -1.47 10.01 -39.54 -0.40 -1.87 16 30 C -0.17 -2.79 9.97 -39.94 -0.40 -3.18 16 31 C -0.05 -0.94 9.30 -39.64 -0.37 -1.31 16 32 C -0.09 -1.84 5.85 -105.14 -0.62 -2.45 16 33 S 0.07 0.91 23.22 -107.50 -2.50 -1.59 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.17 2.24 8.06 -52.48 -0.42 1.82 16 38 H 0.41 7.04 7.59 -40.82 -0.31 6.73 16 39 H 0.16 2.71 6.64 -52.49 -0.35 2.36 16 40 H 0.10 0.88 8.06 -51.93 -0.42 0.46 16 41 H 0.09 0.81 8.08 -51.92 -0.42 0.39 16 42 H 0.13 0.93 7.00 -52.49 -0.37 0.56 16 43 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 46 H 0.11 1.18 7.00 -52.49 -0.37 0.81 16 47 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 48 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 49 H 0.13 2.79 6.77 -52.49 -0.36 2.44 16 LS Contribution 438.42 15.07 6.61 6.61 Total: -1.00 -39.53 438.42 -13.60 -53.13 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.25 Total: 1.76 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -7.32 Total: -0.07 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.28 Total: -35.53 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -1.16 Total: -41.82 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.25 Total: 17.52 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 6.61 Total: 6.61 kcal Total: -39.53 -13.60 -53.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772626388.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.350 kcal (2) G-P(sol) polarization free energy of solvation -39.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds