Wall clock time and date at job start Fri Mar 27 2020 07:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33444 * 125.96902 * 2 1 4 4 N 1.31979 * 114.56651 * 179.73461 * 3 2 1 5 5 C 1.29621 * 116.92391 * 0.02562 * 4 3 2 6 6 N 1.39002 * 124.95183 * 180.02562 * 5 4 3 7 7 C 1.34781 * 119.99565 * 359.97262 * 6 5 4 8 8 O 1.21280 * 120.00142 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.99757 * 179.97438 * 7 6 5 10 10 O 1.42902 * 109.47244 * 184.99651 * 9 7 6 11 11 Si 1.86303 * 109.47083 * 65.00140 * 9 7 6 12 12 H 1.48508 * 109.47033 * 59.99650 * 11 9 7 13 13 H 1.48503 * 109.47228 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47056 * 299.99943 * 11 9 7 15 15 C 1.50702 * 109.47501 * 305.00001 * 9 7 6 16 16 C 1.34230 * 126.49710 * 359.68786 * 15 9 7 17 17 N 1.36838 * 109.92638 * 179.83111 * 16 15 9 18 18 C 1.46501 * 125.06458 * 180.18245 * 17 16 15 19 19 C 1.50697 * 109.47374 * 265.30345 * 18 17 16 20 20 C 1.38358 * 119.84895 * 269.72446 * 19 18 17 21 21 C 1.37944 * 120.15294 * 179.76244 * 20 19 18 22 22 C 1.39637 * 119.84755 * 0.53523 * 21 20 19 23 23 C 1.43196 * 120.15244 * 179.69656 * 22 21 20 24 24 N 9.87583 * 99.54608 * 134.78059 * 7 1 2 25 25 C 1.39630 * 119.69380 * 359.71944 * 22 21 20 26 26 C 1.37945 * 119.85161 * 0.02562 * 25 22 21 27 27 C 1.37686 * 109.87349 * 0.44593 * 17 16 15 28 28 C 1.39126 * 133.51009 * 179.71113 * 27 17 16 29 29 C 1.37745 * 119.77989 * 180.02562 * 28 27 17 30 30 C 1.38835 * 120.66744 * 0.02562 * 29 28 27 31 31 C 1.36618 * 120.52755 * 0.02562 * 30 29 28 32 32 C 1.39642 * 119.76424 * 0.02562 * 31 30 29 33 33 S 1.70973 * 110.10977 * 359.97438 * 5 4 3 34 34 H 1.08995 * 109.46991 * 90.00477 * 1 2 3 35 35 H 1.09002 * 109.46853 * 210.00251 * 1 2 3 36 36 H 1.08996 * 109.46724 * 330.00508 * 1 2 3 37 37 H 1.08005 * 122.71312 * 359.77002 * 3 2 1 38 38 H 0.96996 * 120.00151 * 179.97438 * 6 5 4 39 39 H 1.08003 * 125.04297 * 359.97438 * 16 15 9 40 40 H 1.09006 * 109.46536 * 25.30227 * 18 17 16 41 41 H 1.08999 * 109.47326 * 145.29917 * 18 17 16 42 42 H 1.08008 * 119.92277 * 0.02562 * 20 19 18 43 43 H 1.08006 * 120.07782 * 180.25064 * 21 20 19 44 44 H 1.08002 * 120.07615 * 179.97438 * 25 22 21 45 45 H 1.07999 * 119.92927 * 180.02562 * 26 25 22 46 46 H 1.08003 * 120.10588 * 0.04716 * 28 27 17 47 47 H 1.08004 * 119.66639 * 179.97438 * 29 28 27 48 48 H 1.07997 * 119.73321 * 179.97438 * 30 29 28 49 49 H 1.08001 * 120.12296 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2908 1.0800 0.0000 4 7 3.5846 0.8191 0.0056 5 6 3.9314 -0.4298 0.0097 6 7 5.2423 -0.8922 0.0163 7 6 6.2660 -0.0156 0.0183 8 8 6.0435 1.1766 0.0138 9 6 7.6871 -0.5168 0.0260 10 8 8.5823 0.5908 0.1440 11 14 8.0329 -1.4281 -1.5618 12 1 7.8381 -0.5094 -2.7122 13 1 9.4335 -1.9215 -1.5544 14 1 7.1027 -2.5791 -1.6845 15 6 7.8848 -1.4490 1.1935 16 6 6.9617 -1.7937 2.1051 17 7 7.5044 -2.6619 3.0130 18 6 6.7876 -3.2505 4.1470 19 6 7.0266 -2.4172 5.3796 20 6 8.0957 -2.7055 6.2092 21 6 8.3231 -1.9437 7.3365 22 6 7.4650 -0.8864 7.6456 23 6 7.6912 -0.0955 8.8176 24 7 7.9410 6.8404 -6.8898 25 6 6.3849 -0.6043 6.8068 26 6 6.1723 -1.3709 5.6798 27 6 8.8260 -2.8952 2.7053 28 6 9.8222 -3.6726 3.2876 29 6 11.0818 -3.6997 2.7309 30 6 11.3693 -2.9579 1.5931 31 6 10.4065 -2.1870 1.0057 32 6 9.1229 -2.1439 1.5538 33 16 2.5418 -1.4259 0.0074 34 1 -0.3633 -0.0001 -1.0276 35 1 -0.3633 -0.8900 0.5139 36 1 -0.3632 0.8900 0.5137 37 1 1.8982 2.0862 -0.0036 38 1 5.4202 -1.8457 0.0195 39 1 5.9413 -1.4402 2.1186 40 1 5.7202 -3.2772 3.9278 41 1 7.1488 -4.2646 4.3183 42 1 8.7561 -3.5264 5.9713 43 1 9.1604 -2.1674 7.9811 44 1 5.7171 0.2117 7.0402 45 1 5.3375 -1.1536 5.0300 46 1 9.6083 -4.2531 4.1729 47 1 11.8539 -4.3034 3.1847 48 1 12.3622 -2.9900 1.1695 49 1 10.6374 -1.6123 0.1209 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772626388.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 27 2020 07:44:53 Heat of formation + Delta-G solvation = 465.621524 kcal Electronic energy + Delta-G solvation = -37916.686683 eV Core-core repulsion = 33111.534466 eV Total energy + Delta-G solvation = -4805.152217 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 431.109 amu Computer time = 46.46 seconds Orbital eigenvalues (eV) -42.31826 -41.34240 -39.82861 -39.46688 -37.80583 -35.99147 -35.21964 -33.42774 -32.89923 -31.88177 -31.45321 -30.55346 -29.88847 -28.36838 -28.23002 -27.30137 -26.07749 -24.77081 -23.82998 -23.29163 -23.23520 -22.54956 -21.80300 -20.78072 -20.40911 -19.85427 -19.00852 -17.90547 -17.71381 -17.42076 -16.88524 -16.77055 -16.44794 -16.33401 -15.76440 -15.69994 -15.54670 -15.33625 -15.13662 -14.97113 -14.85324 -14.57507 -14.51860 -14.27600 -14.04832 -14.02538 -13.88711 -13.63668 -13.57608 -13.41157 -13.22464 -12.99490 -12.94181 -12.75994 -12.41952 -12.26058 -12.14954 -12.01764 -11.84389 -11.73827 -11.66610 -11.63657 -11.13081 -10.35130 -10.29199 -10.23512 -10.19433 -10.10180 -9.74181 -9.13122 -8.99028 -8.73343 -8.29457 -7.82645 -6.41041 -5.02058 -4.76641 -0.29001 -0.04511 0.27752 0.64141 0.74958 0.79544 0.81243 1.07730 1.11817 1.36104 1.39844 1.59093 1.84037 2.00874 2.07186 2.22181 2.52044 3.08333 3.21351 3.54605 3.81115 3.88896 3.94562 4.06201 4.08804 4.18037 4.20961 4.26899 4.28299 4.32195 4.37501 4.49096 4.54081 4.63555 4.73452 4.79090 4.82677 4.85423 4.91864 4.94748 5.05803 5.12152 5.17070 5.18756 5.27142 5.39181 5.62265 5.63771 5.64135 5.77625 5.91182 5.98090 5.98886 5.99962 6.06126 6.07857 6.43011 6.57023 6.66532 6.85499 7.20303 7.58348 Molecular weight = 431.11amu Principal moments of inertia in cm(-1) A = 0.004408 B = 0.002549 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 6350.774357 B =10983.108061 C =14157.644742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.233 4.233 3 C 0.034 3.966 4 N -0.532 5.532 5 C 0.238 3.762 6 N -0.639 5.639 7 C 0.485 3.515 8 O -0.522 6.522 9 C 0.004 3.996 10 O -0.858 6.858 11 Si 0.984 3.016 12 H -0.278 1.278 13 H -0.251 1.251 14 H -0.232 1.232 15 C -0.173 4.173 16 C 0.015 3.985 17 N -0.471 5.471 18 C 0.188 3.812 19 C -0.317 4.317 20 C -0.018 4.018 21 C -0.304 4.304 22 C -0.182 4.182 23 C -0.257 4.257 24 N 0.936 4.064 25 C -0.313 4.313 26 C -0.030 4.030 27 C 0.089 3.911 28 C -0.140 4.140 29 C -0.097 4.097 30 C -0.155 4.155 31 C -0.084 4.084 32 C -0.128 4.128 33 S 0.158 5.842 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.193 0.807 38 H 0.426 0.574 39 H 0.150 0.850 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.128 0.872 47 H 0.161 0.839 48 H 0.152 0.848 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.050 20.415 -57.217 61.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.355 4.355 3 C -0.115 4.115 4 N -0.254 5.254 5 C -0.129 4.129 6 N -0.296 5.296 7 C 0.273 3.727 8 O -0.393 6.393 9 C -0.094 4.094 10 O -0.791 6.791 11 Si 0.802 3.198 12 H -0.204 1.204 13 H -0.175 1.175 14 H -0.157 1.157 15 C -0.182 4.182 16 C -0.110 4.110 17 N -0.153 5.153 18 C 0.069 3.931 19 C -0.318 4.318 20 C -0.037 4.037 21 C -0.323 4.323 22 C -0.182 4.182 23 C -0.257 4.257 24 N 0.923 4.077 25 C -0.331 4.331 26 C -0.049 4.049 27 C -0.018 4.018 28 C -0.160 4.160 29 C -0.116 4.116 30 C -0.174 4.174 31 C -0.103 4.103 32 C -0.133 4.133 33 S 0.408 5.592 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.210 0.790 38 H 0.266 0.734 39 H 0.167 0.833 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.136 0.864 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.113 0.887 46 H 0.146 0.854 47 H 0.179 0.821 48 H 0.169 0.831 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.652 19.838 -57.303 61.121 hybrid contribution -0.375 1.259 -0.082 1.316 sum -8.027 21.096 -57.385 61.665 Atomic orbital electron populations 1.20333 0.83238 1.04488 1.04292 1.26254 1.02997 0.92764 1.13528 1.21908 0.85215 1.01654 1.02760 1.66522 1.19783 1.18038 1.21060 1.24255 0.92191 0.92935 1.03501 1.44114 1.01185 1.11578 1.72739 1.24321 0.88636 0.86817 0.72950 1.90484 1.84802 1.18141 1.45836 1.23165 0.87275 0.96619 1.02384 1.94951 1.55187 1.40225 1.88724 0.85686 0.82297 0.76364 0.75419 1.20361 1.17469 1.15669 1.21433 0.92914 1.01681 1.02133 1.21553 0.99074 0.98079 0.92305 1.44460 1.08257 1.39048 1.23527 1.20306 0.96593 0.95344 0.80847 1.19079 1.03922 1.06451 1.02331 1.20536 0.94629 0.96283 0.92231 1.19818 1.04604 1.03666 1.04174 1.21200 0.97011 0.99370 1.00635 1.81537 0.51041 0.85049 1.08077 1.99997 0.76758 0.74016 0.56953 1.19703 1.03746 1.07316 1.02339 1.20472 0.96824 0.93775 0.93795 1.18632 0.85849 1.00715 0.96646 1.20291 0.92462 1.01977 1.01290 1.21122 0.95364 0.99462 0.95626 1.20857 0.99486 0.99209 0.97852 1.20503 0.91717 0.98263 0.99800 1.19250 0.94876 1.01126 0.98046 1.83419 0.94467 1.09784 1.71576 0.88642 0.90205 0.88824 0.79005 0.73393 0.83259 0.88801 0.88084 0.86447 0.89619 0.90904 0.88741 0.85429 0.82126 0.83054 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 650. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.41 71.24 0.74 -0.27 16 2 C -0.23 -6.26 6.58 24.60 0.16 -6.10 16 3 C 0.03 1.16 11.24 83.58 0.94 2.10 16 4 N -0.53 -24.55 8.65 -201.75 -1.75 -26.30 16 5 C 0.24 10.32 8.02 179.21 1.44 11.76 16 6 N -0.64 -30.74 3.56 -313.65 -1.12 -31.86 16 7 C 0.49 29.29 5.30 87.65 0.46 29.76 16 8 O -0.52 -35.86 15.14 15.96 0.24 -35.62 16 9 C 0.00 0.28 0.78 29.10 0.02 0.30 16 10 O -0.86 -67.09 17.19 -129.99 -2.23 -69.32 16 11 Si 0.98 48.61 25.31 68.60 1.74 50.34 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.25 -12.11 6.00 99.48 0.60 -11.51 16 14 H -0.23 -9.24 7.11 99.48 0.71 -8.53 16 15 C -0.17 -10.55 4.48 -18.63 -0.08 -10.63 16 16 C 0.01 0.85 9.57 83.00 0.79 1.64 16 17 N -0.47 -25.33 2.76 -519.99 -1.44 -26.77 16 18 C 0.19 9.21 6.12 85.63 0.52 9.73 16 19 C -0.32 -18.77 5.47 -19.81 -0.11 -18.88 16 20 C -0.02 -1.12 9.68 22.23 0.22 -0.90 16 21 C -0.30 -20.47 9.76 22.54 0.22 -20.25 16 22 C -0.18 -13.11 5.73 -21.36 -0.12 -13.23 16 23 C -0.26 -17.84 25.13 69.07 1.74 -16.11 16 24 N 0.94 -47.85 30.19 37.02 1.12 -46.73 16 25 C -0.31 -21.98 9.76 22.54 0.22 -21.76 16 26 C -0.03 -1.93 9.68 22.23 0.22 -1.72 16 27 C 0.09 4.80 6.81 39.03 0.27 5.07 16 28 C -0.14 -6.42 10.00 22.37 0.22 -6.20 16 29 C -0.10 -3.86 10.01 22.30 0.22 -3.64 16 30 C -0.16 -6.54 9.97 22.03 0.22 -6.33 16 31 C -0.08 -4.41 9.28 22.23 0.21 -4.21 16 32 C -0.13 -7.43 5.85 -20.20 -0.12 -7.55 16 33 S 0.16 4.73 23.22 -56.49 -1.31 3.42 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.19 5.25 8.06 -2.91 -0.02 5.23 16 38 H 0.43 17.82 7.39 -92.71 -0.68 17.14 16 39 H 0.15 8.24 6.40 -2.91 -0.02 8.22 16 40 H 0.09 4.12 8.06 -2.38 -0.02 4.10 16 41 H 0.10 4.29 8.08 -2.39 -0.02 4.27 16 42 H 0.12 6.17 7.00 -2.91 -0.02 6.15 16 43 H 0.09 5.50 8.06 -2.91 -0.02 5.48 16 44 H 0.07 5.02 8.06 -2.91 -0.02 5.00 16 45 H 0.09 5.65 8.06 -2.91 -0.02 5.63 16 46 H 0.13 5.33 7.00 -2.91 -0.02 5.31 16 47 H 0.16 4.88 8.06 -2.91 -0.02 4.86 16 48 H 0.15 5.05 8.06 -2.91 -0.02 5.02 16 49 H 0.10 5.60 6.73 -2.91 -0.02 5.59 16 Total: -1.00 -212.09 459.29 4.66 -207.43 By element: Atomic # 1 Polarization: 51.80 SS G_CDS: 1.01 Total: 52.81 kcal Atomic # 6 Polarization: -85.81 SS G_CDS: 8.40 Total: -77.41 kcal Atomic # 7 Polarization: -128.47 SS G_CDS: -3.18 Total: -131.65 kcal Atomic # 8 Polarization: -102.95 SS G_CDS: -1.99 Total: -104.94 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 1.74 Total: 50.34 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.31 Total: 3.42 kcal Total: -212.09 4.66 -207.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772626388.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 673.055 kcal (2) G-P(sol) polarization free energy of solvation -212.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 460.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -207.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 465.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 46.46 seconds