Wall clock time and date at job start Sun Mar 29 2020 21:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31184 * 1 3 3 Si 1.86796 * 120.00444 * 2 1 4 4 H 1.48502 * 109.47154 * 270.00672 * 3 2 1 5 5 H 1.48506 * 109.46886 * 30.00113 * 3 2 1 6 6 H 1.48496 * 109.47403 * 150.00283 * 3 2 1 7 7 C 1.39076 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99666 * 179.97438 * 7 2 1 9 9 N 1.37573 * 120.00025 * 359.97438 * 7 2 1 10 10 N 1.40465 * 126.50718 * 180.02562 * 9 7 2 11 11 C 1.31261 * 105.98447 * 179.73931 * 10 9 7 12 12 N 1.33150 * 107.59725 * 359.97438 * 11 10 9 13 13 N 1.28584 * 109.91243 * 0.02562 * 12 11 10 14 14 H 0.97005 * 119.99524 * 359.97438 * 1 2 3 15 15 H 1.07992 * 126.19990 * 179.97438 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3118 0.0000 0.0000 3 14 2.2459 1.6176 0.0000 4 1 2.4933 2.0464 -1.4001 5 1 1.4434 2.6526 0.7001 6 1 3.5435 1.4400 0.6999 7 6 2.0071 -1.2045 -0.0005 8 1 3.0871 -1.2045 -0.0010 9 7 1.3192 -2.3959 -0.0005 10 7 1.8790 -3.6841 -0.0005 11 6 0.8658 -4.5186 0.0052 12 7 -0.2517 -3.7947 0.0091 13 7 0.0379 -2.5420 0.0055 14 1 -0.4850 0.8401 0.0004 15 1 0.9275 -5.5967 0.0065 RHF calculation, no. of doubly occupied orbitals= 24 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005906576.mol2 15 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:18 Heat of formation + Delta-G solvation = 92.408276 kcal Electronic energy + Delta-G solvation = -6737.927776 eV Core-core repulsion = 5155.081204 eV Total energy + Delta-G solvation = -1582.846572 eV No. of doubly occupied orbitals = 24 Molecular weight (most abundant/longest-lived isotopes) = 140.039 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -43.07126 -36.34389 -33.36904 -32.65902 -28.29497 -24.01246 -23.37494 -20.17102 -17.58146 -16.71930 -16.48486 -15.39983 -14.24370 -13.86804 -13.21829 -13.11865 -12.05498 -11.93247 -11.79099 -11.01651 -10.91893 -10.74844 -8.86095 -6.91378 0.90752 1.37576 1.62095 1.65119 1.99588 2.04985 2.55235 2.77430 3.93297 4.41850 4.82905 5.30828 5.79034 5.87864 6.24172 6.94815 8.13787 8.37272 Molecular weight = 140.04amu Principal moments of inertia in cm(-1) A = 0.168505 B = 0.023990 C = 0.021157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 166.127040 B = 1166.864313 C = 1323.147881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.000 4.000 3 Si 1.046 2.954 4 H -0.254 1.254 5 H -0.262 1.262 6 H -0.242 1.242 7 C -0.303 4.303 8 H 0.152 0.848 9 N -0.011 5.011 10 N -0.443 5.443 11 C 0.119 3.881 12 N -0.436 5.436 13 N -0.125 5.125 14 H 0.300 0.700 15 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 4.023 0.014 6.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.218 4.218 3 Si 0.861 3.139 4 H -0.178 1.178 5 H -0.186 1.186 6 H -0.165 1.165 7 C -0.450 4.450 8 H 0.169 0.831 9 N 0.095 4.905 10 N -0.292 5.292 11 C -0.184 4.184 12 N -0.300 5.300 13 N -0.109 5.109 14 H 0.111 0.889 15 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.026 4.398 0.018 5.962 hybrid contribution 0.240 -0.267 -0.014 0.360 sum 4.267 4.130 0.004 5.938 Atomic orbital electron populations 1.70237 1.08932 1.31946 1.31033 1.27408 0.96824 1.04816 0.92749 0.84230 0.78141 0.71405 0.80152 1.17835 1.18615 1.16454 1.21259 0.94683 0.78413 1.50636 0.83088 1.49636 1.02852 1.06428 1.31631 1.78398 1.24370 0.88681 1.37739 1.27359 0.86263 1.02726 1.02034 1.74944 1.28314 0.97678 1.29102 1.78868 0.97127 1.10519 1.24346 0.88933 0.73197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.95 11.91 21.67 0.26 -41.69 13 2 C 0.00 0.01 5.50 84.99 0.47 0.48 13 3 Si 1.05 34.16 29.55 68.60 2.03 36.19 13 4 H -0.25 -7.88 7.11 99.48 0.71 -7.17 13 5 H -0.26 -8.14 7.11 99.48 0.71 -7.43 13 6 H -0.24 -7.25 7.11 99.48 0.71 -6.55 13 7 C -0.30 -16.01 10.65 83.99 0.89 -15.11 13 8 H 0.15 7.08 7.83 -2.91 -0.02 7.05 13 9 N -0.01 -0.64 4.40 -53.72 -0.24 -0.88 13 10 N -0.44 -24.14 12.70 -61.00 -0.77 -24.92 13 11 C 0.12 5.93 13.23 180.63 2.39 8.32 13 12 N -0.44 -25.05 12.31 -61.01 -0.75 -25.80 13 13 N -0.13 -7.78 11.15 37.02 0.41 -7.36 13 14 H 0.30 13.93 8.30 -92.70 -0.77 13.16 13 15 H 0.25 9.11 8.06 -2.91 -0.02 9.09 13 Total: -1.00 -68.61 156.90 5.99 -62.62 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.30 Total: 8.15 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 3.75 Total: -6.32 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -1.09 Total: -100.65 kcal Atomic # 14 Polarization: 34.16 SS G_CDS: 2.03 Total: 36.19 kcal Total: -68.61 5.99 -62.62 kcal The number of atoms in the molecule is 15 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005906576.mol2 15 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.030 kcal (2) G-P(sol) polarization free energy of solvation -68.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds