Wall clock time and date at job start Sun Mar 29 2020 21:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00057 * 2 1 4 4 H 1.48500 * 109.47116 * 240.00370 * 3 2 1 5 5 H 1.48505 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47075 * 119.99844 * 3 2 1 7 7 C 1.37875 * 119.99958 * 180.02562 * 2 1 3 8 8 C 1.51874 * 135.78689 * 180.02562 * 7 2 1 9 9 C 1.53843 * 86.65265 * 205.14841 * 8 7 2 10 10 H 1.09002 * 113.65913 * 89.73556 * 9 8 7 11 11 N 1.46904 * 113.65825 * 220.68606 * 9 8 7 12 12 C 1.51576 * 135.78270 * 359.97438 * 7 2 1 13 13 H 0.96997 * 120.00018 * 359.97438 * 1 2 3 14 14 H 1.09000 * 113.66531 * 90.73240 * 8 7 2 15 15 H 1.08997 * 113.75523 * 319.57646 * 8 7 2 16 16 H 1.00896 * 110.99871 * 279.00018 * 11 9 8 17 17 H 1.00899 * 110.99681 * 42.95638 * 11 9 8 18 18 H 1.09002 * 113.66886 * 40.38400 * 12 7 2 19 19 H 1.09003 * 113.75677 * 269.32898 * 12 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 6 3.4660 -1.6072 -0.0002 9 6 3.0016 -2.9201 -0.6540 10 1 2.9810 -2.8831 -1.7432 11 7 3.6874 -4.1115 -0.1359 12 6 1.6323 -2.6634 -0.0007 13 1 -0.4850 0.8400 0.0004 14 1 3.8832 -1.7392 0.9981 15 1 4.0954 -0.9954 -0.6465 16 1 4.5907 -4.2264 -0.5706 17 1 3.7720 -4.0717 0.8688 18 1 0.7874 -2.9006 -0.6473 19 1 1.5362 -3.0921 0.9968 RHF calculation, no. of doubly occupied orbitals= 23 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307634488.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:21 Heat of formation + Delta-G solvation = -9.505986 kcal Electronic energy + Delta-G solvation = -5891.443301 eV Core-core repulsion = 4601.369789 eV Total energy + Delta-G solvation = -1290.073511 eV No. of doubly occupied orbitals = 23 Molecular weight (most abundant/longest-lived isotopes) = 127.069 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.86561 -34.18545 -31.64995 -26.17840 -25.08434 -21.25785 -17.78616 -16.78716 -16.42322 -15.36316 -14.95985 -14.04346 -13.01360 -12.89714 -12.72121 -12.38217 -12.18544 -11.31789 -10.65226 -10.48892 -9.32912 -8.25851 -6.26143 1.37602 1.40711 1.49553 2.34943 2.98712 3.94425 4.30694 4.58251 4.64846 5.01994 5.18780 5.21084 5.51362 5.70486 6.12673 6.40330 6.60644 6.84420 7.43850 8.87074 Molecular weight = 127.07amu Principal moments of inertia in cm(-1) A = 0.126157 B = 0.030037 C = 0.025232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 221.892308 B = 931.971333 C = 1109.439864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.035 3.965 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.547 4.547 8 C -0.071 4.071 9 C 0.094 3.906 10 H 0.085 0.915 11 N -0.842 5.842 12 C -0.026 4.026 13 H 0.269 0.731 14 H 0.039 0.961 15 H 0.030 0.970 16 H 0.344 0.656 17 H 0.341 0.659 18 H 0.000 1.000 19 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.325 -0.398 -0.199 7.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.163 4.163 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.567 4.567 8 C -0.111 4.111 9 C -0.018 4.018 10 H 0.103 0.897 11 N -0.371 5.371 12 C -0.064 4.064 13 H 0.078 0.922 14 H 0.058 0.942 15 H 0.049 0.951 16 H 0.158 0.842 17 H 0.153 0.847 18 H 0.019 0.981 19 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 6.561 -0.734 -0.520 6.622 hybrid contribution 0.515 1.431 0.438 1.583 sum 7.076 0.697 -0.082 7.110 Atomic orbital electron populations 1.70016 1.07894 1.28324 1.51149 1.25021 0.95151 1.01986 0.94120 0.85368 0.78227 0.77469 0.79509 1.18759 1.20502 1.19032 1.21640 0.93063 0.91800 1.50196 1.21947 0.94723 0.97724 0.96702 1.22494 0.95104 0.86595 0.97593 0.89651 1.58784 1.26224 1.41288 1.10792 1.20989 0.93866 0.96505 0.95073 0.92202 0.94247 0.95123 0.84243 0.84684 0.98127 0.96099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.38 13.96 21.45 0.30 -57.08 13 2 C 0.04 2.01 5.47 84.65 0.46 2.48 13 3 Si 0.97 44.23 29.16 68.60 2.00 46.23 13 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 13 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 13 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 13 7 C -0.55 -30.82 6.76 -15.94 -0.11 -30.93 13 8 C -0.07 -3.30 7.16 30.51 0.22 -3.08 13 9 C 0.09 4.11 5.02 45.44 0.23 4.34 13 10 H 0.09 3.72 8.14 -2.39 -0.02 3.70 13 11 N -0.84 -29.70 9.64 -166.50 -1.60 -31.30 13 12 C -0.03 -1.42 7.84 30.42 0.24 -1.18 13 13 H 0.27 15.39 8.31 -92.71 -0.77 14.62 13 14 H 0.04 1.74 8.06 -2.39 -0.02 1.72 13 15 H 0.03 1.34 8.11 -2.39 -0.02 1.32 13 16 H 0.34 9.92 9.08 -89.70 -0.81 9.10 13 17 H 0.34 11.43 8.87 -89.70 -0.80 10.63 13 18 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 13 19 H 0.02 1.11 8.14 -2.39 -0.02 1.09 13 Total: -1.00 -63.01 173.15 1.38 -61.63 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -0.36 Total: 8.90 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 1.04 Total: -28.38 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -1.31 Total: -88.38 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.00 Total: 46.23 kcal Total: -63.01 1.38 -61.63 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307634488.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.127 kcal (2) G-P(sol) polarization free energy of solvation -63.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds