Wall clock time and date at job start Sun Mar 29 2020 21:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29448 * 1 3 3 Si 1.86793 * 120.00184 * 2 1 4 4 H 1.48510 * 109.47112 * 274.99094 * 3 2 1 5 5 H 1.48497 * 109.47224 * 34.98491 * 3 2 1 6 6 H 1.48495 * 109.47337 * 154.98710 * 3 2 1 7 7 C 1.46464 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99845 * 185.70314 * 7 2 1 9 9 N 1.34528 * 119.99936 * 5.43071 * 7 2 1 10 10 C 1.37065 * 126.14720 * 174.39518 * 9 7 2 11 11 C 1.34769 * 107.51292 * 179.97438 * 10 9 7 12 12 N 1.48001 * 126.00017 * 179.97438 * 11 10 9 13 13 O 1.31705 * 120.00029 * 0.02562 * 12 11 10 14 14 O 1.31702 * 120.00160 * 179.97438 * 12 11 10 15 15 C 1.40722 * 107.99740 * 359.97438 * 11 10 9 16 16 N 1.30639 * 108.48391 * 359.71629 * 15 11 10 17 17 H 0.97001 * 120.00067 * 0.02562 * 1 2 3 18 18 H 1.07994 * 126.24283 * 359.97438 * 10 9 7 19 19 H 1.07993 * 125.75501 * 179.97438 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2945 0.0000 0.0000 3 14 2.2285 1.6176 0.0000 4 1 2.3705 2.1073 -1.3949 5 1 1.4827 2.6199 0.8027 6 1 3.5747 1.4120 0.5920 7 6 2.0268 -1.2684 0.0006 8 1 3.1027 -1.2707 0.0935 9 7 1.3586 -2.4309 -0.1092 10 6 1.9178 -3.6764 -0.2304 11 6 0.9098 -4.5672 -0.3125 12 7 1.0538 -6.0334 -0.4540 13 8 2.2531 -6.5749 -0.5098 14 8 -0.0172 -6.7967 -0.5231 15 6 -0.3038 -3.8584 -0.2400 16 7 -0.0337 -2.5867 -0.1125 17 1 -0.4850 0.8400 -0.0004 18 1 2.9734 -3.9027 -0.2555 19 1 -1.2917 -4.2930 -0.2787 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002537510.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:43 Heat of formation + Delta-G solvation = 87.078460 kcal Electronic energy + Delta-G solvation = -10426.779721 eV Core-core repulsion = 8143.537417 eV Total energy + Delta-G solvation = -2283.242304 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.043 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.40110 -37.19590 -34.34834 -32.98894 -31.67509 -29.65796 -26.23702 -24.22391 -21.31369 -20.04186 -18.54409 -16.54925 -16.48200 -15.91864 -14.86770 -14.55818 -13.80033 -13.69314 -12.57001 -12.10635 -11.74562 -11.60849 -10.95543 -10.23537 -10.15056 -10.03059 -9.55938 -9.54600 -9.16028 -8.30477 -7.51929 -4.95254 0.81421 2.47212 2.48059 2.68028 2.72788 2.99765 3.30753 3.53066 3.98790 4.18218 5.51146 5.63376 6.09748 6.28321 6.43620 6.72137 7.12220 7.31513 7.65003 8.20114 8.48300 8.66749 9.39688 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.101505 B = 0.010640 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 275.783002 B = 2631.004293 C = 2894.743267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.053 3.947 3 Si 0.953 3.047 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.296 4.296 8 H 0.143 0.857 9 N -0.093 5.093 10 C -0.073 4.073 11 C -0.153 4.153 12 N 0.067 4.933 13 O -0.289 6.289 14 O -0.289 6.289 15 C 0.070 3.930 16 N -0.266 5.266 17 H 0.299 0.701 18 H 0.173 0.827 19 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 6.411 0.375 6.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.178 4.178 3 Si 0.773 3.227 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.174 1.174 7 C -0.436 4.436 8 H 0.160 0.840 9 N 0.149 4.851 10 C -0.226 4.226 11 C -0.264 4.264 12 N 0.501 4.499 13 O -0.451 6.451 14 O -0.451 6.451 15 C -0.114 4.114 16 N -0.093 5.093 17 H 0.112 0.888 18 H 0.191 0.809 19 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.290 7.943 0.526 8.065 hybrid contribution 0.622 -0.635 -0.112 0.896 sum 1.913 7.309 0.414 7.566 Atomic orbital electron populations 1.69197 1.08296 1.31495 1.23477 1.27509 0.95435 1.01288 0.93588 0.85497 0.80106 0.77097 0.79992 1.18462 1.19111 1.17420 1.21731 0.93214 0.79980 1.48685 0.83963 1.44188 1.04518 1.04587 1.31815 1.21241 0.98428 0.83453 1.19449 1.19646 0.95828 0.77680 1.33204 1.49171 1.01579 1.03187 0.96007 1.96136 1.07302 1.78739 1.62889 1.96133 1.25066 1.60973 1.62904 1.23981 0.97699 0.90803 0.98867 1.78415 0.90466 1.13994 1.26386 0.88800 0.80946 0.79977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -15.50 11.92 55.98 0.67 -14.83 13 2 C 0.05 1.07 5.68 -15.25 -0.09 0.98 13 3 Si 0.95 14.55 29.64 -169.99 -5.04 9.51 13 4 H -0.26 -3.97 7.11 56.52 0.40 -3.57 13 5 H -0.27 -4.01 7.11 56.52 0.40 -3.61 13 6 H -0.25 -3.69 7.11 56.52 0.40 -3.29 13 7 C -0.30 -6.48 10.48 -13.06 -0.14 -6.62 13 8 H 0.14 2.69 7.94 -52.49 -0.42 2.28 13 9 N -0.09 -2.24 3.66 -10.13 -0.04 -2.28 13 10 C -0.07 -1.69 11.16 -16.44 -0.18 -1.88 13 11 C -0.15 -3.74 7.17 -80.25 -0.58 -4.32 13 12 N 0.07 1.74 4.98 33.82 0.17 1.91 13 13 O -0.29 -7.59 19.75 -31.57 -0.62 -8.22 13 14 O -0.29 -7.54 19.78 -31.57 -0.62 -8.17 13 15 C 0.07 1.62 11.79 -17.12 -0.20 1.42 13 16 N -0.27 -6.58 10.52 30.77 0.32 -6.25 13 17 H 0.30 5.74 8.27 -40.82 -0.34 5.40 13 18 H 0.17 3.60 8.06 -52.49 -0.42 3.17 13 19 H 0.18 3.68 8.06 -52.49 -0.42 3.25 13 LS Contribution 200.19 15.07 3.02 3.02 Total: -1.00 -28.35 200.19 -3.73 -32.08 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -0.40 Total: 3.64 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.18 Total: -10.41 kcal Atomic # 7 Polarization: -22.58 SS G_CDS: 1.12 Total: -21.46 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -1.25 Total: -16.39 kcal Atomic # 14 Polarization: 14.55 SS G_CDS: -5.04 Total: 9.51 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -28.35 -3.73 -32.08 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002537510.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.160 kcal (2) G-P(sol) polarization free energy of solvation -28.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds