Wall clock time and date at job start Sun Mar 29 2020 22:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.72370 * 2 1 4 4 C 1.54935 * 110.66949 * 236.89580 * 2 1 3 5 5 C 1.54592 * 102.92046 * 204.15184 * 4 2 1 6 6 C 1.53999 * 105.14088 * 21.95850 * 5 4 2 7 7 N 1.47902 * 107.05870 * 1.22557 * 6 5 4 8 8 C 1.46895 * 110.99753 * 214.15890 * 7 6 5 9 9 C 1.52994 * 109.47465 * 65.28343 * 8 7 6 10 10 C 1.50710 * 109.47169 * 185.44253 * 9 8 7 11 11 H 1.07997 * 119.99740 * 0.02562 * 10 9 8 12 12 C 1.37872 * 119.99670 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00636 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99692 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46766 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47224 * 120.00077 * 14 12 10 17 17 H 1.48492 * 109.47294 * 240.00616 * 14 12 10 18 18 H 1.08996 * 109.46886 * 296.91057 * 1 2 3 19 19 H 1.09001 * 109.46545 * 56.90818 * 1 2 3 20 20 H 1.08999 * 109.47153 * 176.90623 * 1 2 3 21 21 H 1.08996 * 110.71731 * 85.79744 * 4 2 1 22 22 H 1.08996 * 110.87708 * 322.58016 * 4 2 1 23 23 H 1.08998 * 110.31365 * 263.04219 * 5 4 2 24 24 H 1.09000 * 110.30940 * 140.87205 * 5 4 2 25 25 H 1.08999 * 109.91796 * 241.86720 * 6 5 4 26 26 H 1.09002 * 110.07612 * 120.66718 * 6 5 4 27 27 H 1.09004 * 109.46770 * 305.28007 * 8 7 6 28 28 H 1.09000 * 109.47011 * 185.29007 * 8 7 6 29 29 H 1.09000 * 109.47086 * 65.44683 * 9 8 7 30 30 H 1.09001 * 109.47283 * 305.44387 * 9 8 7 31 31 H 0.96993 * 119.99910 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0769 -0.7917 -1.2143 5 6 3.4853 -1.2198 -0.7420 6 6 3.4279 -1.1646 0.7959 7 7 2.0542 -0.7587 1.1645 8 6 2.0580 0.0723 2.3758 9 6 2.7796 1.3903 2.0879 10 6 2.9012 2.1852 3.3625 11 1 2.5039 1.7897 4.2855 12 6 3.5206 3.4169 3.3502 13 7 4.0048 3.8984 2.2262 14 14 3.6720 4.4020 4.9302 15 1 3.0519 3.6446 6.0470 16 1 5.1069 4.6391 5.2301 17 1 2.9780 5.7049 4.7697 18 1 -0.3633 0.4651 0.9164 19 1 -0.3632 0.5611 -0.8610 20 1 -0.3633 -1.0261 -0.0555 21 1 2.1431 -0.1515 -2.0939 22 1 1.4573 -1.6645 -1.4199 23 1 4.2375 -0.5260 -1.1175 24 1 3.7045 -2.2338 -1.0762 25 1 4.1440 -0.4321 1.1683 26 1 3.6498 -2.1464 1.2141 27 1 2.5733 -0.4566 3.1776 28 1 1.0312 0.2786 2.6780 29 1 2.2112 1.9632 1.3553 30 1 3.7741 1.1814 1.6936 31 1 4.4409 4.7647 2.2177 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037910723.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:36 Heat of formation + Delta-G solvation = -11.338983 kcal Electronic energy + Delta-G solvation = -11489.070920 eV Core-core repulsion = 9576.767448 eV Total energy + Delta-G solvation = -1912.303472 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.74741 -33.57267 -31.76406 -30.88695 -28.22225 -25.18704 -24.06244 -21.76517 -20.39831 -18.57654 -16.64636 -15.35866 -14.72214 -14.39412 -13.87834 -13.61886 -12.85129 -12.36251 -12.02329 -11.74543 -11.43227 -11.26062 -10.89171 -10.80562 -10.67912 -10.60114 -10.25768 -10.08605 -9.87733 -9.59827 -9.09162 -8.34810 -7.48336 -6.02598 -4.05069 3.29319 3.36876 3.41361 4.43613 4.70950 5.11941 5.17389 5.32669 5.43154 5.73388 5.92458 5.98276 6.03541 6.13276 6.22825 6.28707 6.37088 6.40616 6.52839 6.60458 6.67527 6.80112 6.96863 7.49698 7.56358 7.76061 7.84090 8.01288 8.41981 9.02063 9.59053 11.08562 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.059544 B = 0.010193 C = 0.009911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.123981 B = 2746.348853 C = 2824.552233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.048 3.952 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.129 4.129 6 C 0.029 3.971 7 N -0.519 5.519 8 C 0.047 3.953 9 C -0.010 4.010 10 C -0.518 4.518 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 H 0.055 0.945 19 H 0.051 0.949 20 H 0.053 0.947 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.021 0.979 30 H 0.019 0.981 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 -7.511 -5.005 9.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.060 4.060 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.167 4.167 6 C -0.099 4.099 7 N -0.243 5.243 8 C -0.081 4.081 9 C -0.048 4.048 10 C -0.557 4.557 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 H 0.074 0.926 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.246 -7.829 -4.941 9.810 hybrid contribution 0.741 1.433 0.739 1.775 sum -2.505 -6.395 -4.203 8.052 Atomic orbital electron populations 1.21604 0.94705 1.01238 1.01246 1.22891 0.95413 0.97705 0.90028 0.90866 1.22501 0.96089 0.99609 0.97389 1.22351 0.97427 1.00897 0.96036 1.22835 0.91883 1.00659 0.94533 1.65020 1.17814 1.37806 1.03689 1.22379 1.00559 0.94211 0.90943 1.19692 0.95725 0.91946 0.97445 1.21217 1.37054 1.02584 0.94805 0.92554 1.25028 0.95514 0.97716 0.96176 1.69972 1.38930 1.18825 1.25768 0.86539 0.77728 0.80044 0.83738 1.19669 1.21030 1.21003 0.92568 0.93040 0.92744 0.91847 0.91513 0.91830 0.91914 0.92341 0.91563 0.92131 0.92003 0.96108 0.96300 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.51 37.16 0.35 -1.70 16 2 C 0.05 0.86 2.68 -65.78 -0.18 0.68 16 3 H 0.07 1.54 5.49 -51.93 -0.29 1.26 16 4 C -0.12 -1.77 6.50 -24.87 -0.16 -1.94 16 5 C -0.13 -1.97 6.93 -25.37 -0.18 -2.14 16 6 C 0.03 0.52 6.46 -2.75 -0.02 0.50 16 7 N -0.52 -10.00 5.23 -222.62 -1.16 -11.16 16 8 C 0.05 1.02 5.25 -3.83 -0.02 1.00 16 9 C -0.01 -0.27 4.11 -27.88 -0.11 -0.38 16 10 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 14 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H 0.06 0.94 7.58 -51.93 -0.39 0.55 16 19 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 20 H 0.05 0.80 8.11 -51.93 -0.42 0.37 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.07 0.92 8.03 -51.93 -0.42 0.51 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 1.19 5.80 -51.93 -0.30 0.88 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 28 H 0.06 1.34 7.62 -51.93 -0.40 0.94 16 29 H 0.02 0.58 6.26 -51.93 -0.33 0.25 16 30 H 0.02 0.52 6.12 -51.93 -0.32 0.21 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 245.29 15.07 3.70 3.70 Total: -1.00 -29.75 245.29 -7.41 -37.16 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.93 Total: -2.63 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -0.72 Total: -17.55 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.43 Total: -37.49 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.75 -7.41 -37.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037910723.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.823 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds