Wall clock time and date at job start Sun Mar 29 2020 21:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46865 * 150.59592 * 3 2 1 5 5 N 1.46496 * 109.46867 * 179.97438 * 4 3 2 6 6 C 1.36935 * 120.00168 * 270.00096 * 5 4 3 7 7 H 1.07997 * 119.99803 * 144.92408 * 6 5 4 8 8 C 1.38812 * 120.00029 * 324.92336 * 6 5 4 9 9 N 1.31620 * 119.99923 * 337.94615 * 8 6 5 10 10 Si 1.86798 * 120.00018 * 157.95106 * 8 6 5 11 11 H 1.48498 * 109.47670 * 59.99599 * 10 8 6 12 12 H 1.48500 * 109.47161 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.46770 * 299.99456 * 10 8 6 14 14 C 1.46503 * 119.99704 * 90.00219 * 5 4 3 15 15 C 1.53004 * 117.49740 * 183.23422 * 14 5 4 16 16 C 1.52995 * 117.49870 * 114.57730 * 14 5 4 17 17 H 1.09001 * 109.46916 * 30.60049 * 3 2 1 18 18 H 1.08994 * 109.47105 * 270.59819 * 3 2 1 19 19 H 1.08995 * 109.46805 * 60.00065 * 4 3 2 20 20 H 1.09000 * 109.47048 * 300.00043 * 4 3 2 21 21 H 0.96995 * 119.99672 * 175.76702 * 9 8 6 22 22 H 1.08999 * 115.55313 * 328.90767 * 14 5 4 23 23 H 1.09001 * 117.49599 * 0.02562 * 15 14 5 24 24 H 1.09000 * 117.49619 * 145.02077 * 15 14 5 25 25 H 1.09002 * 117.50220 * 214.97803 * 16 14 5 26 26 H 1.09001 * 117.50083 * 359.97438 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1174 1.2576 -0.7082 5 7 4.5824 1.2586 -0.7077 6 6 5.2663 1.8414 0.3256 7 1 6.1994 1.4155 0.6638 8 6 4.7604 2.9796 0.9383 9 7 3.9019 3.7450 0.2984 10 14 5.2981 3.4250 2.6708 11 1 6.7690 3.6277 2.6960 12 1 4.6183 4.6756 3.0940 13 1 4.9340 2.3254 3.6002 14 6 5.3157 0.6360 -1.8127 15 6 6.8424 0.6025 -1.7174 16 6 6.1574 1.5498 -2.7056 17 1 2.9717 -0.8837 -0.5231 18 1 2.9714 -0.0099 1.0275 19 1 2.7537 2.1419 -0.1852 20 1 2.7541 1.2681 -1.7358 21 1 3.5016 4.5056 0.7478 22 1 4.8221 -0.2134 -2.2850 23 1 7.3011 1.0433 -0.8323 24 1 7.3532 -0.2688 -2.1272 25 1 6.2180 1.3014 -3.7652 26 1 6.1653 2.6143 -2.4711 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044411837.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:25 Heat of formation + Delta-G solvation = 52.559901 kcal Electronic energy + Delta-G solvation = -10526.515106 eV Core-core repulsion = 8606.179544 eV Total energy + Delta-G solvation = -1920.335562 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.88270 -37.55627 -35.44053 -33.32975 -30.71043 -26.65325 -24.01811 -22.85786 -21.47125 -18.34935 -18.06075 -17.20426 -16.27215 -15.91173 -15.20938 -14.88493 -14.29749 -13.78737 -13.49460 -13.35711 -12.78588 -12.72294 -12.53343 -12.33402 -12.00205 -11.75831 -11.41724 -11.25160 -10.82284 -10.41624 -8.51513 -7.77209 -5.42221 1.51046 1.54844 1.59725 1.85328 1.90227 2.54079 3.12517 3.25235 3.49498 3.79696 4.42292 4.50905 4.53398 4.64438 4.75434 4.92439 5.04408 5.14542 5.32244 5.46115 5.63142 5.73853 5.84835 6.48915 6.69120 7.18160 7.88205 8.36878 9.14024 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.024677 B = 0.019731 C = 0.012378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.371116 B = 1418.729503 C = 2261.560050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.246 3.754 3 C -0.035 4.035 4 C 0.150 3.850 5 N -0.564 5.564 6 C -0.257 4.257 7 H 0.070 0.930 8 C -0.036 4.036 9 N -0.916 5.916 10 Si 0.949 3.051 11 H -0.278 1.278 12 H -0.301 1.301 13 H -0.272 1.272 14 C 0.103 3.897 15 C -0.180 4.180 16 C -0.226 4.226 17 H 0.127 0.873 18 H 0.107 0.893 19 H 0.071 0.929 20 H 0.040 0.960 21 H 0.249 0.751 22 H 0.125 0.875 23 H 0.075 0.925 24 H 0.112 0.888 25 H 0.100 0.900 26 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.537 -7.140 -1.880 8.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.070 4.070 3 C -0.077 4.077 4 C 0.022 3.978 5 N -0.281 5.281 6 C -0.387 4.387 7 H 0.087 0.913 8 C -0.233 4.233 9 N -0.560 5.560 10 Si 0.778 3.222 11 H -0.204 1.204 12 H -0.228 1.228 13 H -0.198 1.198 14 C -0.005 4.005 15 C -0.218 4.218 16 C -0.267 4.267 17 H 0.145 0.855 18 H 0.125 0.875 19 H 0.088 0.912 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.142 0.858 23 H 0.093 0.907 24 H 0.130 0.870 25 H 0.118 0.882 26 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.800 -6.954 -1.834 7.414 hybrid contribution 0.582 0.894 0.886 1.387 sum 2.382 -6.060 -0.948 6.580 Atomic orbital electron populations 1.81115 1.14550 1.11510 1.11592 1.29814 0.95653 0.90751 0.90822 1.20094 0.78727 1.03429 1.05473 1.20734 0.83277 0.96008 0.97752 1.43549 1.00759 1.63608 1.20213 1.19278 1.07080 1.04034 1.08321 0.91276 1.25757 1.00655 0.94767 1.02169 1.70161 1.33850 1.16125 1.35816 0.85628 0.77920 0.76858 0.81821 1.20357 1.22818 1.19810 1.21651 0.90058 0.97024 0.91718 1.23053 0.96045 1.01754 1.00954 1.23290 1.10287 0.96530 0.96560 0.85470 0.87520 0.91172 0.94175 0.94145 0.85768 0.90673 0.86978 0.88221 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -19.70 18.54 20.01 0.37 -19.33 15 2 C 0.25 8.48 15.43 89.44 1.38 9.86 15 3 C -0.03 -1.10 6.03 28.79 0.17 -0.92 15 4 C 0.15 6.13 5.29 86.38 0.46 6.58 15 5 N -0.56 -24.51 2.78 -678.05 -1.88 -26.39 15 6 C -0.26 -12.56 8.63 84.03 0.73 -11.83 15 7 H 0.07 3.34 6.55 -2.91 -0.02 3.32 15 8 C -0.04 -1.86 4.96 84.86 0.42 -1.44 15 9 N -0.92 -50.83 11.33 21.65 0.25 -50.59 15 10 Si 0.95 42.00 29.61 68.60 2.03 44.03 15 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 12 H -0.30 -13.80 7.11 99.48 0.71 -13.09 15 13 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 14 C 0.10 3.73 6.56 44.99 0.30 4.03 15 15 C -0.18 -6.05 9.80 30.62 0.30 -5.75 15 16 C -0.23 -8.24 10.36 30.62 0.32 -7.92 15 17 H 0.13 3.16 8.14 -2.39 -0.02 3.14 15 18 H 0.11 3.42 8.14 -2.39 -0.02 3.41 15 19 H 0.07 3.46 5.35 -2.39 -0.01 3.45 15 20 H 0.04 1.57 8.07 -2.39 -0.02 1.55 15 21 H 0.25 13.66 8.32 -92.71 -0.77 12.89 15 22 H 0.12 3.63 8.14 -2.39 -0.02 3.61 15 23 H 0.07 2.88 6.37 -2.39 -0.02 2.87 15 24 H 0.11 2.95 8.14 -2.39 -0.02 2.93 15 25 H 0.10 3.02 8.14 -2.39 -0.02 3.00 15 26 H 0.05 2.30 8.14 -2.39 -0.02 2.28 15 Total: -1.00 -58.52 234.15 6.00 -52.53 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.17 Total: 7.15 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 4.07 Total: -7.40 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -1.27 Total: -96.31 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -58.52 6.00 -52.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044411837.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.085 kcal (2) G-P(sol) polarization free energy of solvation -58.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds