Wall clock time and date at job start Sun Mar 29 2020 22:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.70193 * 2 1 4 4 C 1.53188 * 109.58989 * 239.63934 * 2 1 3 5 5 H 1.08999 * 109.50051 * 305.56415 * 4 2 1 6 6 C 1.53008 * 109.49759 * 65.62681 * 4 2 1 7 7 C 1.53033 * 109.34088 * 185.59310 * 4 2 1 8 8 C 1.53047 * 109.53807 * 61.35210 * 7 4 2 9 9 C 1.53192 * 109.31052 * 298.63770 * 8 7 4 10 10 N 1.46925 * 108.77661 * 54.63119 * 9 8 7 11 11 C 1.36933 * 120.62972 * 126.43525 * 10 9 8 12 12 H 1.07997 * 120.00153 * 209.00291 * 11 10 9 13 13 C 1.38818 * 119.99895 * 29.00644 * 11 10 9 14 14 N 1.31617 * 120.00173 * 15.01288 * 13 11 10 15 15 Si 1.86801 * 119.99931 * 195.01623 * 13 11 10 16 16 H 1.48501 * 109.47367 * 89.99848 * 15 13 11 17 17 H 1.48504 * 109.46984 * 209.99907 * 15 13 11 18 18 H 1.48507 * 109.47064 * 329.99607 * 15 13 11 19 19 H 1.09007 * 109.47121 * 180.35626 * 1 2 3 20 20 H 1.08994 * 109.47571 * 300.36010 * 1 2 3 21 21 H 1.09006 * 109.46970 * 60.36187 * 1 2 3 22 22 H 1.08991 * 109.47128 * 179.97438 * 6 4 2 23 23 H 1.09005 * 109.46879 * 299.93941 * 6 4 2 24 24 H 1.09004 * 109.46636 * 59.93290 * 6 4 2 25 25 H 1.09000 * 109.46056 * 181.36930 * 7 4 2 26 26 H 1.08996 * 109.46457 * 301.34378 * 7 4 2 27 27 H 1.08999 * 109.49666 * 58.58279 * 8 7 4 28 28 H 1.09002 * 109.49941 * 178.65147 * 8 7 4 29 29 H 1.08999 * 109.58393 * 174.42369 * 9 8 7 30 30 H 1.09005 * 109.58203 * 294.84466 * 9 8 7 31 31 H 0.97000 * 120.00338 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 1 1.6026 -1.7252 -1.2915 6 6 1.6541 0.0601 -2.4967 7 6 3.5675 -0.8487 -1.1704 8 6 3.9569 -1.6664 0.0633 9 6 3.4656 -0.9472 1.3235 10 7 2.0232 -0.6992 1.1945 11 6 1.1545 -1.1113 2.1695 12 1 0.1365 -1.3653 1.9135 13 6 1.5823 -1.2026 3.4869 14 7 2.7061 -0.6250 3.8555 15 14 0.5632 -2.1454 4.7367 16 1 0.9962 -3.5657 4.7584 17 1 0.7550 -1.5488 6.0830 18 1 -0.8720 -2.0711 4.3622 19 1 -0.3634 -1.0277 0.0064 20 1 -0.3634 0.5194 0.8867 21 1 -0.3633 0.5082 -0.8933 22 1 2.0201 -0.4590 -3.3824 23 1 0.5687 0.1458 -2.5489 24 1 2.0953 1.0558 -2.4500 25 1 3.9373 -1.3459 -2.0671 26 1 4.0066 0.1464 -1.0997 27 1 3.4978 -2.6533 0.0054 28 1 5.0411 -1.7712 0.1030 29 1 3.6524 -1.5719 2.1970 30 1 3.9914 0.0016 1.4311 31 1 3.0049 -0.6885 4.7761 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050564727.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:23 Heat of formation + Delta-G solvation = 0.996321 kcal Electronic energy + Delta-G solvation = -11894.890299 eV Core-core repulsion = 9983.121726 eV Total energy + Delta-G solvation = -1911.768573 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.02280 -33.55043 -32.08208 -30.65610 -27.22012 -25.31567 -24.60341 -21.11615 -20.30506 -18.88620 -16.21967 -15.04651 -14.17789 -13.79834 -13.77172 -13.26326 -12.89152 -12.23204 -11.87666 -11.58243 -11.23354 -11.11169 -10.90981 -10.71398 -10.53122 -10.26849 -10.03471 -9.86567 -9.78501 -9.30952 -9.12362 -8.38335 -6.53624 -5.69765 -3.12996 3.41552 3.48162 3.49208 4.55008 5.36550 5.44443 5.50370 5.59682 5.75382 5.97017 6.15669 6.18747 6.24502 6.33678 6.37426 6.53100 6.58960 6.61542 6.68487 6.84343 6.90093 7.02787 7.17423 7.26285 7.51632 7.77677 7.88981 8.55153 9.31017 9.95502 10.53118 11.38595 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.053320 B = 0.014557 C = 0.012406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.008503 B = 1923.053064 C = 2256.387767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.175 3.825 3 H 0.022 0.978 4 C -0.106 4.106 5 H 0.064 0.936 6 C -0.143 4.143 7 C -0.103 4.103 8 C -0.144 4.144 9 C 0.171 3.829 10 N -0.589 5.589 11 C -0.246 4.246 12 H 0.069 0.931 13 C -0.001 4.001 14 N -0.906 5.906 15 Si 0.900 3.100 16 H -0.289 1.289 17 H -0.292 1.292 18 H -0.279 1.279 19 H 0.051 0.949 20 H 0.058 0.942 21 H 0.040 0.960 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.015 0.985 31 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.525 -0.217 -8.383 8.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.068 3.932 3 H 0.040 0.960 4 C -0.126 4.126 5 H 0.082 0.918 6 C -0.201 4.201 7 C -0.141 4.141 8 C -0.183 4.183 9 C 0.045 3.955 10 N -0.312 5.312 11 C -0.376 4.376 12 H 0.087 0.913 13 C -0.199 4.199 14 N -0.551 5.551 15 Si 0.731 3.269 16 H -0.216 1.216 17 H -0.219 1.219 18 H -0.205 1.205 19 H 0.070 0.930 20 H 0.077 0.923 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.033 0.967 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.473 -0.201 -8.196 8.212 hybrid contribution -0.380 -0.482 0.721 0.946 sum -0.853 -0.682 -7.475 7.554 Atomic orbital electron populations 1.21854 0.96361 1.01245 1.00046 1.20430 0.92640 0.93340 0.86800 0.96044 1.21658 0.95787 0.99667 0.95476 0.91801 1.21844 1.00883 0.99951 0.97403 1.21444 0.95712 0.99631 0.97311 1.22200 0.98667 0.99581 0.97842 1.20769 0.83400 0.96960 0.94327 1.44136 1.03008 1.65192 1.18903 1.19221 0.94765 1.37303 0.86304 0.91317 1.25079 0.97904 0.99981 0.96918 1.70023 1.23426 1.44904 1.16739 0.86316 0.79856 0.79790 0.80973 1.21575 1.21851 1.20491 0.92953 0.92274 0.94154 0.93744 0.92885 0.93245 0.94013 0.93029 0.92959 0.93607 0.89599 0.96687 0.93801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 7.71 37.16 0.29 -2.43 16 2 C 0.17 3.78 2.96 -67.60 -0.20 3.58 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -1.94 2.34 -90.50 -0.21 -2.16 16 5 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 6 C -0.14 -2.13 8.97 37.16 0.33 -1.80 16 7 C -0.10 -1.87 5.17 -26.69 -0.14 -2.01 16 8 C -0.14 -2.92 6.08 -26.61 -0.16 -3.08 16 9 C 0.17 4.26 5.29 -3.71 -0.02 4.24 16 10 N -0.59 -15.16 2.99 -164.77 -0.49 -15.65 16 11 C -0.25 -6.82 8.61 -15.06 -0.13 -6.95 16 12 H 0.07 1.86 6.20 -52.49 -0.33 1.53 16 13 C 0.00 -0.02 4.96 -17.43 -0.09 -0.11 16 14 N -0.91 -26.84 11.14 55.49 0.62 -26.22 16 15 Si 0.90 22.08 29.58 -169.99 -5.03 17.05 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H 0.05 1.04 7.41 -51.93 -0.38 0.66 16 20 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 21 H 0.04 0.66 6.61 -51.93 -0.34 0.32 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.75 6.61 -51.93 -0.34 0.40 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 239.23 15.07 3.61 3.61 Total: -1.00 -29.20 239.23 -6.67 -35.87 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -5.05 Total: -3.94 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -0.33 Total: -10.71 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.13 Total: -41.87 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.20 -6.67 -35.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050564727.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.865 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds