Wall clock time and date at job start Sun Mar 29 2020 21:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27576 * 126.41236 * 2 1 4 4 N 1.39150 * 113.15906 * 180.15201 * 3 2 1 5 5 C 1.46500 * 124.43615 * 179.77007 * 4 3 2 6 6 C 1.50706 * 109.46949 * 269.70426 * 5 4 3 7 7 H 1.07995 * 120.00167 * 359.72205 * 6 5 4 8 8 C 1.37879 * 119.99394 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00338 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99424 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47474 * 90.00322 * 10 8 6 12 12 H 1.48507 * 109.46754 * 210.00056 * 10 8 6 13 13 H 1.48498 * 109.47278 * 329.99887 * 10 8 6 14 14 C 1.34954 * 111.12277 * 359.51359 * 4 3 2 15 15 O 1.21297 * 127.49847 * 180.24868 * 14 4 3 16 16 C 1.51440 * 126.41700 * 179.63156 * 2 1 3 17 17 H 1.09000 * 109.46923 * 270.36944 * 1 2 3 18 18 H 1.08996 * 109.47350 * 30.37371 * 1 2 3 19 19 H 1.09000 * 109.47138 * 150.37673 * 1 2 3 20 20 H 1.09000 * 109.47175 * 149.70452 * 5 4 3 21 21 H 1.09001 * 109.47297 * 29.69960 * 5 4 3 22 22 H 0.96996 * 119.99730 * 179.97438 * 9 8 6 23 23 H 1.09000 * 110.61024 * 61.51409 * 16 2 1 24 24 H 1.08996 * 110.73882 * 298.60628 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0267 0.0000 4 7 3.6187 0.7077 -0.0034 5 6 4.7021 1.6938 -0.0090 6 6 5.0741 2.0232 -1.4318 7 1 4.5586 1.5424 -2.2499 8 6 6.0763 2.9346 -1.6888 9 7 6.7079 3.5160 -0.6925 10 14 6.5370 3.3434 -3.4524 11 1 5.7164 4.4868 -3.9261 12 1 7.9756 3.7064 -3.5167 13 1 6.2855 2.1621 -4.3163 14 6 3.8035 -0.6291 0.0048 15 8 4.8579 -1.2288 0.0087 16 6 2.4060 -1.2186 0.0078 17 1 -0.3633 0.0066 1.0277 18 1 -0.3634 0.8866 -0.5196 19 1 -0.3633 -0.8933 -0.5080 20 1 5.5697 1.2835 0.5077 21 1 4.3715 2.5998 0.4991 22 1 7.4132 4.1569 -0.8734 23 1 2.2423 -1.8220 -0.8850 24 1 2.2424 -1.8132 0.9066 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100096840.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:32 Heat of formation + Delta-G solvation = -13.773847 kcal Electronic energy + Delta-G solvation = -10643.615782 eV Core-core repulsion = 8557.259199 eV Total energy + Delta-G solvation = -2086.356582 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.98683 -38.43961 -35.82061 -33.98396 -30.63928 -30.10184 -27.99316 -24.89393 -22.07974 -20.31608 -18.88789 -17.71740 -17.08478 -16.41563 -16.22996 -15.47293 -14.67487 -14.46488 -14.20314 -13.72329 -13.37384 -13.16463 -13.03748 -12.71128 -12.57822 -12.36590 -11.73635 -11.64426 -10.79531 -10.62252 -9.53803 -8.34412 -6.51597 0.76598 1.32429 1.36192 1.46166 1.66816 1.79006 2.32801 2.92799 3.02914 3.24855 4.01388 4.36847 4.62324 4.74792 4.86776 4.91444 4.98342 5.25268 5.37231 5.55812 5.67903 5.84453 6.52275 6.81926 7.06881 7.20511 8.73646 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.054262 B = 0.011506 C = 0.010789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.888042 B = 2432.839775 C = 2594.510414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.094 3.906 3 N -0.282 5.282 4 N -0.466 5.466 5 C 0.280 3.720 6 C -0.556 4.556 7 H 0.049 0.951 8 C 0.011 3.989 9 N -0.924 5.924 10 Si 0.979 3.021 11 H -0.263 1.263 12 H -0.272 1.272 13 H -0.272 1.272 14 C 0.463 3.537 15 O -0.565 6.565 16 C -0.157 4.157 17 H 0.108 0.892 18 H 0.080 0.920 19 H 0.119 0.881 20 H 0.015 0.985 21 H 0.027 0.973 22 H 0.273 0.727 23 H 0.159 0.841 24 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.887 -7.221 0.099 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 N -0.090 5.090 4 N -0.283 5.283 5 C 0.160 3.840 6 C -0.594 4.594 7 H 0.067 0.933 8 C -0.189 4.189 9 N -0.563 5.563 10 Si 0.802 3.198 11 H -0.188 1.188 12 H -0.197 1.197 13 H -0.197 1.197 14 C 0.252 3.748 15 O -0.443 6.443 16 C -0.198 4.198 17 H 0.127 0.873 18 H 0.099 0.901 19 H 0.138 0.862 20 H 0.033 0.967 21 H 0.045 0.955 22 H 0.082 0.918 23 H 0.176 0.824 24 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.940 -6.301 0.163 14.394 hybrid contribution 1.064 -0.248 -0.570 1.232 sum -11.876 -6.549 -0.407 13.568 Atomic orbital electron populations 1.20573 0.80673 1.05771 1.05599 1.26339 0.99238 0.89477 0.94711 1.74649 0.88990 1.29292 1.16028 1.50296 1.03701 1.07160 1.67129 1.18825 0.81875 0.86111 0.97160 1.21561 1.20164 1.25498 0.92171 0.93261 1.25934 0.95049 0.94945 1.02990 1.70035 1.24271 1.28533 1.33422 0.85251 0.77967 0.78700 0.77885 1.18770 1.19657 1.19693 1.22448 0.93069 0.83381 0.75894 1.90661 1.33761 1.67131 1.52792 1.22217 0.88563 0.99332 1.09699 0.87348 0.90084 0.86210 0.96723 0.95469 0.91837 0.82363 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.50 71.24 0.75 -0.15 14 2 C 0.09 2.53 7.59 46.83 0.36 2.89 14 3 N -0.28 -11.42 12.02 -40.84 -0.49 -11.91 14 4 N -0.47 -23.13 3.52 -465.38 -1.64 -24.77 14 5 C 0.28 16.57 5.99 85.63 0.51 17.08 14 6 C -0.56 -34.25 9.39 25.60 0.24 -34.01 14 7 H 0.05 3.04 7.81 -2.91 -0.02 3.02 14 8 C 0.01 0.64 5.46 84.66 0.46 1.10 14 9 N -0.92 -56.99 13.29 21.45 0.28 -56.71 14 10 Si 0.98 46.05 29.54 68.60 2.03 48.08 14 11 H -0.26 -11.67 7.11 99.48 0.71 -10.97 14 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 14 13 H -0.27 -12.64 7.11 99.48 0.71 -11.94 14 14 C 0.46 20.92 8.43 87.94 0.74 21.66 14 15 O -0.56 -30.17 17.81 -3.08 -0.05 -30.22 14 16 C -0.16 -4.20 6.93 29.65 0.21 -3.99 14 17 H 0.11 1.01 8.14 -2.39 -0.02 0.99 14 18 H 0.08 1.17 8.14 -2.39 -0.02 1.15 14 19 H 0.12 0.75 8.14 -2.39 -0.02 0.74 14 20 H 0.01 0.95 8.04 -2.39 -0.02 0.93 14 21 H 0.03 1.66 8.14 -2.39 -0.02 1.64 14 22 H 0.27 15.54 8.31 -92.71 -0.77 14.77 14 23 H 0.16 3.27 8.14 -2.39 -0.02 3.25 14 24 H 0.17 3.14 8.14 -2.39 -0.02 3.12 14 Total: -1.00 -80.30 224.81 4.58 -75.72 By element: Atomic # 1 Polarization: -5.95 SS G_CDS: 1.19 Total: -4.76 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 3.27 Total: 4.57 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -1.85 Total: -93.39 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.05 Total: -30.22 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -80.30 4.58 -75.72 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100096840.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.948 kcal (2) G-P(sol) polarization free energy of solvation -80.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds