Wall clock time and date at job start Sun Mar 29 2020 22:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46949 * 2 1 4 4 C 1.53492 * 114.20639 * 175.00198 * 3 2 1 5 5 N 1.47066 * 87.98733 * 139.85066 * 4 3 2 6 6 C 1.34780 * 136.06263 * 152.62087 * 5 4 3 7 7 O 1.21687 * 119.99315 * 359.97438 * 6 5 4 8 8 C 1.46367 * 120.00039 * 180.02562 * 6 5 4 9 9 H 1.07997 * 120.00623 * 359.97438 * 8 6 5 10 10 C 1.40055 * 119.99553 * 180.02562 * 8 6 5 11 11 N 1.30669 * 120.00386 * 359.97438 * 10 8 6 12 12 Si 1.86805 * 119.99833 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47259 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47064 * 119.99724 * 12 10 8 15 15 H 1.48500 * 109.47213 * 239.99890 * 12 10 8 16 16 C 1.47067 * 87.88528 * 332.87766 * 5 4 3 17 17 H 1.09001 * 109.47021 * 180.02562 * 1 2 3 18 18 H 1.09001 * 109.47184 * 299.99646 * 1 2 3 19 19 H 1.09001 * 109.47556 * 60.00362 * 1 2 3 20 20 H 1.09001 * 109.47184 * 240.00354 * 2 1 3 21 21 H 1.09001 * 109.47556 * 119.99637 * 2 1 3 22 22 H 1.08998 * 113.28231 * 41.93016 * 3 2 1 23 23 H 1.09001 * 113.47148 * 25.07179 * 4 3 2 24 24 H 1.09003 * 113.52295 * 254.63614 * 4 3 2 25 25 H 0.96998 * 120.00171 * 180.02562 * 11 10 8 26 26 H 1.09003 * 113.46750 * 141.89678 * 16 5 4 27 27 H 1.09000 * 113.47312 * 272.34122 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5646 1.5711 0.1220 5 7 3.5000 2.6583 -0.8663 6 6 4.2320 3.7526 -1.1546 7 8 5.2229 4.0121 -0.4975 8 6 3.8345 4.6295 -2.2570 9 1 2.9549 4.3994 -2.8399 10 6 4.5955 5.7664 -2.5568 11 7 5.6601 6.0446 -1.8520 12 14 4.0886 6.8852 -3.9643 13 1 2.8569 6.3531 -4.6007 14 1 3.8263 8.2502 -3.4418 15 1 5.1800 6.9413 -4.9697 16 6 2.2814 2.0294 -1.3977 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.8933 -0.5138 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 1.4813 2.0970 0.6690 23 1 4.1041 0.6931 -0.2333 24 1 3.8961 1.8993 1.1071 25 1 6.1869 6.8322 -2.0594 26 1 1.5207 2.7474 -1.7044 27 1 2.4790 1.2734 -2.1577 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205532734.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:02 Heat of formation + Delta-G solvation = -39.199222 kcal Electronic energy + Delta-G solvation = -10957.442438 eV Core-core repulsion = 8908.097761 eV Total energy + Delta-G solvation = -2049.344677 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.100 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.80439 -38.08760 -34.71711 -33.95102 -29.98569 -27.83208 -26.65595 -24.28964 -21.57566 -20.51821 -18.64121 -17.67058 -16.55698 -16.12443 -15.80902 -15.14386 -14.59949 -14.12716 -13.83203 -13.33209 -13.13520 -12.97126 -12.76283 -12.63047 -12.42637 -11.99256 -11.76508 -11.63289 -11.07848 -10.99921 -9.92328 -9.19134 -8.35150 -6.92003 1.36850 1.37753 1.56379 2.19606 2.38360 2.70313 3.45177 3.49785 4.08645 4.23472 4.35347 4.57687 4.63358 4.70172 4.73563 4.87284 5.01481 5.12691 5.25113 5.25999 5.35135 5.44067 5.61267 5.92228 6.41216 6.80212 7.58069 8.38336 8.61512 Molecular weight = 183.10amu Principal moments of inertia in cm(-1) A = 0.066796 B = 0.010124 C = 0.008983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.087708 B = 2765.031673 C = 3116.093909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.100 4.100 4 C 0.095 3.905 5 N -0.689 5.689 6 C 0.559 3.441 7 O -0.637 6.637 8 C -0.564 4.564 9 H 0.084 0.916 10 C 0.026 3.974 11 N -0.824 5.824 12 Si 1.005 2.995 13 H -0.247 1.247 14 H -0.265 1.265 15 H -0.265 1.265 16 C 0.112 3.888 17 H 0.068 0.932 18 H 0.054 0.946 19 H 0.053 0.947 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.094 0.906 23 H 0.077 0.923 24 H 0.043 0.957 25 H 0.277 0.723 26 H 0.064 0.936 27 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.021 -8.851 -0.979 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.119 4.119 4 C -0.028 4.028 5 N -0.428 5.428 6 C 0.367 3.633 7 O -0.525 6.525 8 C -0.601 4.601 9 H 0.102 0.898 10 C -0.189 4.189 11 N -0.453 5.453 12 Si 0.823 3.177 13 H -0.170 1.170 14 H -0.190 1.190 15 H -0.190 1.190 16 C -0.011 4.011 17 H 0.087 0.913 18 H 0.073 0.927 19 H 0.073 0.927 20 H 0.090 0.910 21 H 0.095 0.905 22 H 0.112 0.888 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.204 -8.415 -0.634 13.241 hybrid contribution 0.393 0.626 -0.303 0.799 sum -9.811 -7.789 -0.937 12.562 Atomic orbital electron populations 1.21734 0.94455 1.02319 1.01981 1.21397 0.96891 0.92767 1.03078 1.22962 0.93623 0.98800 0.96496 1.22955 0.97269 0.89793 0.92814 1.49825 1.30840 1.24405 1.37704 1.18407 0.81053 0.79347 0.84473 1.90539 1.30391 1.75342 1.56202 1.21337 1.13569 1.09455 1.15689 0.89825 1.27094 0.93209 0.98919 0.99672 1.70200 1.13897 1.24156 1.37079 0.84882 0.79553 0.76968 0.76306 1.16952 1.18953 1.18983 1.22958 0.86029 0.95309 0.96782 0.91318 0.92710 0.92739 0.90953 0.90525 0.88768 0.90474 0.93833 0.91334 0.91746 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.90 71.98 0.71 -1.78 15 2 C -0.10 -2.09 5.85 30.60 0.18 -1.91 15 3 C -0.10 -2.92 3.99 -10.46 -0.04 -2.96 15 4 C 0.10 3.69 8.19 83.18 0.68 4.37 15 5 N -0.69 -34.19 3.69 -863.43 -3.19 -37.37 15 6 C 0.56 35.28 8.00 86.36 0.69 35.97 15 7 O -0.64 -46.09 15.80 -4.31 -0.07 -46.16 15 8 C -0.56 -33.88 9.38 24.83 0.23 -33.64 15 9 H 0.08 4.57 7.76 -2.91 -0.02 4.54 15 10 C 0.03 1.49 5.50 85.31 0.47 1.96 15 11 N -0.82 -52.27 11.83 21.84 0.26 -52.01 15 12 Si 1.00 42.00 29.56 68.60 2.03 44.03 15 13 H -0.25 -9.52 7.11 99.48 0.71 -8.81 15 14 H -0.26 -10.55 7.11 99.48 0.71 -9.84 15 15 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 16 C 0.11 4.02 7.89 83.18 0.66 4.67 15 17 H 0.07 0.94 8.14 -2.39 -0.02 0.92 15 18 H 0.05 0.91 8.14 -2.39 -0.02 0.89 15 19 H 0.05 0.94 8.14 -2.39 -0.02 0.92 15 20 H 0.07 1.38 7.82 -2.39 -0.02 1.36 15 21 H 0.08 1.39 8.14 -2.39 -0.02 1.37 15 22 H 0.09 2.79 8.12 -2.39 -0.02 2.77 15 23 H 0.08 2.69 8.10 -2.39 -0.02 2.68 15 24 H 0.04 1.79 8.14 -2.39 -0.02 1.77 15 25 H 0.28 15.70 8.29 -92.71 -0.77 14.93 15 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 27 H 0.08 2.59 7.89 -2.39 -0.02 2.58 15 Total: -1.00 -80.10 237.74 3.75 -76.35 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.14 Total: 8.49 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 3.58 Total: 6.68 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -2.93 Total: -89.38 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -0.07 Total: -46.16 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -80.10 3.75 -76.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205532734.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.150 kcal (2) G-P(sol) polarization free energy of solvation -80.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds