Wall clock time and date at job start Sun Mar 29 2020 22:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34419 * 124.35189 * 2 1 4 4 O 1.21281 * 124.93727 * 359.55344 * 3 2 1 5 5 C 1.51274 * 110.11742 * 179.58868 * 3 2 1 6 6 C 1.54627 * 104.19509 * 343.74521 * 5 3 2 7 7 C 1.46765 * 124.35021 * 179.97438 * 2 1 3 8 8 H 1.08994 * 110.31726 * 77.97660 * 7 2 1 9 9 C 1.53002 * 110.24223 * 316.01954 * 7 2 1 10 10 C 1.50704 * 109.46985 * 70.01699 * 9 7 2 11 11 H 1.07992 * 120.00226 * 4.81099 * 10 9 7 12 12 C 1.37887 * 119.99491 * 184.81497 * 10 9 7 13 13 N 1.31509 * 120.00212 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99613 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46929 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47191 * 59.99485 * 14 12 10 17 17 H 1.48499 * 109.46728 * 299.99780 * 14 12 10 18 18 H 1.08992 * 109.47551 * 264.49932 * 1 2 3 19 19 H 1.09003 * 109.46903 * 24.50671 * 1 2 3 20 20 H 1.09004 * 109.47087 * 144.49610 * 1 2 3 21 21 H 1.09002 * 110.48818 * 225.06714 * 5 3 2 22 22 H 1.08999 * 110.48866 * 102.42531 * 5 3 2 23 23 H 1.08998 * 110.97412 * 266.67708 * 6 5 3 24 24 H 1.09006 * 110.99715 * 142.93454 * 6 5 3 25 25 H 1.08995 * 109.47663 * 310.01265 * 9 7 2 26 26 H 1.09007 * 109.46657 * 190.01288 * 9 7 2 27 27 H 0.97002 * 120.00336 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7946 2.2442 -0.0077 5 6 3.6897 0.7378 0.0102 6 6 3.7009 -0.7487 0.4359 7 6 2.2931 -1.2117 0.0005 8 1 2.3309 -1.6447 -0.9990 9 6 1.7390 -2.2312 0.9978 10 6 0.4346 -2.7815 0.4812 11 1 0.0789 -2.4977 -0.4982 12 6 -0.3046 -3.6474 1.2590 13 7 0.1288 -3.9934 2.4515 14 14 -1.9217 -4.3291 0.6189 15 1 -2.5169 -5.2305 1.6379 16 1 -1.6773 -5.0904 -0.6325 17 1 -2.8562 -3.2086 0.3421 18 1 -0.3634 -0.0985 1.0228 19 1 -0.3633 0.9351 -0.4263 20 1 -0.3633 -0.8366 -0.5968 21 1 4.2326 1.3459 0.7338 22 1 4.1195 0.8529 -0.9849 23 1 3.8268 -0.8447 1.5143 24 1 4.4754 -1.3015 -0.0959 25 1 1.5730 -1.7456 1.9595 26 1 2.4537 -3.0451 1.1203 27 1 0.9687 -3.6397 2.7837 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218288004.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:17 Heat of formation + Delta-G solvation = -48.112304 kcal Electronic energy + Delta-G solvation = -11326.377792 eV Core-core repulsion = 9276.646614 eV Total energy + Delta-G solvation = -2049.731177 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.85849 -36.26871 -33.32782 -32.19136 -29.49126 -26.04304 -25.12027 -22.42813 -20.77629 -18.76027 -16.98800 -16.25903 -15.77055 -14.50191 -13.82496 -13.47032 -13.25814 -13.03642 -12.67743 -12.05566 -11.98703 -11.49778 -11.24208 -10.87638 -10.71037 -10.57394 -10.23947 -9.93557 -9.26627 -8.63030 -8.43394 -7.98223 -6.44652 -4.15361 3.07688 3.38595 3.38971 3.57761 3.74716 4.45844 4.80750 4.97896 5.23021 5.31999 5.51915 5.85925 5.93279 6.06191 6.16305 6.32062 6.33293 6.47372 6.65706 6.97813 7.19815 7.37739 7.84641 8.04915 8.32810 8.71938 8.76320 9.55262 10.94783 Molecular weight = 183.10amu Principal moments of inertia in cm(-1) A = 0.060621 B = 0.012348 C = 0.010944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.773163 B = 2266.980738 C = 2557.842610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.594 5.594 3 C 0.505 3.495 4 O -0.560 6.560 5 C -0.154 4.154 6 C -0.132 4.132 7 C 0.138 3.862 8 H 0.071 0.929 9 C 0.002 3.998 10 C -0.603 4.603 11 H 0.054 0.946 12 C 0.018 3.982 13 N -0.909 5.909 14 Si 1.064 2.936 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.287 1.287 18 H 0.056 0.944 19 H 0.053 0.947 20 H 0.086 0.914 21 H 0.093 0.907 22 H 0.096 0.904 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.017 0.983 26 H 0.020 0.980 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 3.876 -4.639 7.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.326 5.326 3 C 0.292 3.708 4 O -0.440 6.440 5 C -0.194 4.194 6 C -0.170 4.170 7 C 0.035 3.965 8 H 0.089 0.911 9 C -0.035 4.035 10 C -0.641 4.641 11 H 0.072 0.928 12 C -0.186 4.186 13 N -0.545 5.545 14 Si 0.892 3.108 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.213 1.213 18 H 0.075 0.925 19 H 0.072 0.928 20 H 0.105 0.895 21 H 0.111 0.889 22 H 0.114 0.886 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.013 3.434 -4.253 6.241 hybrid contribution 1.285 0.874 -0.363 1.596 sum 4.298 4.308 -4.616 7.638 Atomic orbital electron populations 1.21625 0.77793 1.01470 1.02717 1.48197 1.07045 1.06863 1.70478 1.20898 0.89437 0.84507 0.75914 1.90642 1.79039 1.21451 1.52917 1.22301 0.95123 0.98211 1.03761 1.22737 0.97652 0.94198 1.02392 1.21854 0.87944 0.85874 1.00828 0.91142 1.19534 0.96960 0.92911 0.94102 1.22017 1.06590 1.31037 1.04421 0.92809 1.25793 1.03463 0.94779 0.94609 1.70790 1.22825 1.43252 1.17616 0.83603 0.75141 0.76533 0.75501 1.20750 1.21408 1.21303 0.92499 0.92827 0.89523 0.88871 0.88576 0.90316 0.89899 0.96476 0.96185 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.13 9.39 59.85 0.56 2.69 15 2 N -0.59 -12.00 3.18 -172.72 -0.55 -12.55 15 3 C 0.50 9.91 8.02 -10.86 -0.09 9.82 15 4 O -0.56 -12.67 17.51 5.56 0.10 -12.58 15 5 C -0.15 -2.28 6.86 -26.75 -0.18 -2.46 15 6 C -0.13 -2.00 6.69 -25.11 -0.17 -2.17 15 7 C 0.14 2.67 3.33 -67.02 -0.22 2.44 15 8 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 9 C 0.00 0.05 3.73 -27.88 -0.10 -0.05 15 10 C -0.60 -15.63 7.25 -34.43 -0.25 -15.88 15 11 H 0.05 1.36 5.91 -52.49 -0.31 1.05 15 12 C 0.02 0.49 5.46 -17.82 -0.10 0.39 15 13 N -0.91 -26.65 13.65 55.43 0.76 -25.89 15 14 Si 1.06 24.10 29.90 -169.99 -5.08 19.02 15 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 16 H -0.29 -6.23 7.11 56.52 0.40 -5.83 15 17 H -0.29 -6.18 7.11 56.52 0.40 -5.78 15 18 H 0.06 1.22 8.14 -51.93 -0.42 0.79 15 19 H 0.05 1.01 7.81 -51.93 -0.41 0.60 15 20 H 0.09 1.77 5.69 -51.93 -0.30 1.47 15 21 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 22 H 0.10 1.22 8.14 -51.93 -0.42 0.79 15 23 H 0.08 1.21 7.91 -51.93 -0.41 0.80 15 24 H 0.08 1.05 8.14 -51.93 -0.42 0.62 15 25 H 0.02 0.43 7.82 -51.93 -0.41 0.03 15 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 27 H 0.27 7.84 7.19 -40.82 -0.29 7.55 15 LS Contribution 227.46 15.07 3.43 3.43 Total: -1.00 -30.62 227.46 -5.35 -35.98 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -3.45 Total: -2.19 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -0.55 Total: -5.21 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.21 Total: -38.44 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.10 Total: -12.58 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.08 Total: 19.02 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.62 -5.35 -35.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218288004.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.133 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds