Wall clock time and date at job start Sun Mar 29 2020 22:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47398 * 2 1 4 4 H 1.09001 * 109.46859 * 305.00320 * 3 2 1 5 5 C 1.50696 * 109.47549 * 185.00176 * 3 2 1 6 6 H 1.08002 * 120.00333 * 239.99696 * 5 3 2 7 7 C 1.37882 * 120.00316 * 59.99663 * 5 3 2 8 8 N 1.31520 * 119.99561 * 0.02562 * 7 5 3 9 9 Si 1.86789 * 120.00278 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47049 * 60.00338 * 9 7 5 11 11 H 1.48501 * 109.47041 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47500 * 300.00407 * 9 7 5 13 13 N 1.46902 * 109.47192 * 64.99769 * 3 2 1 14 14 C 1.46899 * 111.00337 * 275.00338 * 13 3 2 15 15 H 1.09001 * 115.56134 * 350.68833 * 14 13 3 16 16 C 1.53072 * 117.51329 * 136.38817 * 14 13 3 17 17 C 1.53000 * 117.49940 * 204.99768 * 14 13 3 18 18 H 1.09006 * 117.49536 * 144.99782 * 17 14 13 19 19 C 1.52997 * 117.49905 * 0.02562 * 17 14 13 20 20 H 1.08999 * 109.46851 * 299.99760 * 1 2 3 21 21 H 1.08998 * 109.47366 * 59.99866 * 1 2 3 22 22 H 1.09002 * 109.46991 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47516 * 239.99887 * 2 1 3 24 24 H 1.08998 * 109.47366 * 120.00134 * 2 1 3 25 25 H 0.96999 * 119.99680 * 179.97438 * 8 7 5 26 26 H 1.00903 * 110.99535 * 38.95897 * 13 3 2 27 27 H 1.09002 * 117.51224 * 0.02562 * 16 14 13 28 28 H 1.08994 * 117.49497 * 214.96365 * 16 14 13 29 29 H 1.09002 * 109.47153 * 300.08416 * 19 17 14 30 30 H 1.09001 * 109.46832 * 180.08607 * 19 17 14 31 31 H 1.09004 * 109.47261 * 60.08589 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8889 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1734 9 14 6.0049 0.8813 -1.3819 10 1 6.5975 0.1473 -0.2349 11 1 6.3977 0.2177 -2.6510 12 1 6.4994 2.2815 -1.3822 13 7 1.6514 2.0993 1.2552 14 6 0.2913 2.6468 1.1638 15 1 -0.1551 2.6338 0.1695 16 6 -0.6399 2.4304 2.3593 17 6 -0.0614 3.8192 2.0813 18 1 -0.7395 4.5779 1.6903 19 6 1.0296 4.3322 3.0233 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8899 25 1 3.8293 -0.0605 -2.9503 26 1 1.7343 1.4652 2.0358 27 1 -0.2431 1.8821 3.2138 28 1 -1.6984 2.2752 2.1510 29 1 1.3424 3.5278 3.6892 30 1 0.6397 5.1615 3.6134 31 1 1.8842 4.6726 2.4384 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251310323.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:46 Heat of formation + Delta-G solvation = -5.279734 kcal Electronic energy + Delta-G solvation = -11463.915886 eV Core-core repulsion = 9551.875163 eV Total energy + Delta-G solvation = -1912.040723 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.49514 -36.66896 -33.88894 -31.41310 -29.32633 -27.98930 -24.64947 -22.62288 -21.69420 -20.67772 -18.35773 -17.01871 -16.33448 -15.87237 -15.02052 -14.98103 -14.41719 -13.84882 -13.46024 -13.18665 -12.99793 -12.97102 -12.64668 -12.55023 -12.16431 -11.98781 -11.87517 -11.61319 -11.38127 -10.93889 -10.56118 -10.41837 -8.67677 -8.07763 -6.19032 1.43205 1.44843 1.52507 2.44580 3.02737 3.19461 3.59323 4.02529 4.13794 4.35471 4.51052 4.59336 4.61174 4.71876 4.88708 4.99676 5.05373 5.10162 5.15095 5.25764 5.31439 5.39800 5.57998 5.62631 5.74515 5.88911 6.33595 6.69786 6.87049 6.97813 7.50581 8.96714 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.047743 B = 0.012038 C = 0.010113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.336577 B = 2325.367560 C = 2768.043606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.227 3.773 4 H -0.001 1.001 5 C -0.519 4.519 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.959 3.041 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.650 5.650 14 C 0.016 3.984 15 H 0.085 0.915 16 C -0.189 4.189 17 C -0.154 4.154 18 H 0.109 0.891 19 C -0.103 4.103 20 H 0.066 0.934 21 H 0.034 0.966 22 H 0.049 0.951 23 H 0.065 0.935 24 H 0.032 0.968 25 H 0.260 0.740 26 H 0.331 0.669 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.179 2.708 7.239 9.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C 0.118 3.882 4 H 0.016 0.984 5 C -0.557 4.557 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.785 3.215 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.278 5.278 14 C -0.095 4.095 15 H 0.103 0.897 16 C -0.228 4.228 17 C -0.173 4.173 18 H 0.127 0.873 19 C -0.160 4.160 20 H 0.085 0.915 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.149 0.851 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.825 3.210 6.895 9.580 hybrid contribution 0.461 -0.955 -0.504 1.174 sum -5.365 2.255 6.391 8.644 Atomic orbital electron populations 1.21898 0.96429 1.00691 1.01051 1.22080 0.94483 1.00690 1.00981 1.18964 0.93799 0.89079 0.86313 0.98351 1.21475 0.92792 1.36269 1.05210 0.92903 1.25696 1.02518 0.95159 0.95491 1.70007 1.36446 1.39673 1.09924 0.85602 0.80480 0.78207 0.77242 1.19642 1.21003 1.20029 1.60342 1.20992 1.40412 1.06081 1.22539 0.89746 1.02848 0.94405 0.89660 1.23580 0.99482 0.99772 0.99960 1.22698 1.01038 0.91592 1.01999 0.87311 1.21070 0.96848 1.00465 0.97603 0.91507 0.94684 0.93221 0.91672 0.94962 0.93066 0.85102 0.88616 0.87788 0.93193 0.91441 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 8.85 71.98 0.64 -4.91 16 2 C -0.14 -6.78 5.24 30.59 0.16 -6.62 16 3 C 0.23 11.56 2.18 44.17 0.10 11.65 16 4 H 0.00 -0.08 7.57 -2.39 -0.02 -0.10 16 5 C -0.52 -29.26 8.84 25.60 0.23 -29.03 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.53 5.29 84.66 0.45 0.98 16 8 N -0.92 -53.59 11.30 21.45 0.24 -53.34 16 9 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.65 -27.57 5.84 -473.19 -2.76 -30.33 16 14 C 0.02 0.57 4.08 44.94 0.18 0.75 16 15 H 0.09 3.27 7.10 -2.39 -0.02 3.26 16 16 C -0.19 -5.18 8.78 30.62 0.27 -4.91 16 17 C -0.15 -4.48 6.40 -10.79 -0.07 -4.55 16 18 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 19 C -0.10 -2.90 9.64 71.98 0.69 -2.20 16 20 H 0.07 2.30 4.98 -2.39 -0.01 2.29 16 21 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.06 3.55 5.95 -2.39 -0.01 3.53 16 24 H 0.03 1.49 8.04 -2.39 -0.02 1.47 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.33 13.30 8.20 -89.69 -0.74 12.57 16 27 H 0.10 2.52 8.00 -2.39 -0.02 2.50 16 28 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.05 1.40 7.90 -2.39 -0.02 1.39 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.44 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -59.22 250.00 2.51 -56.71 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.36 Total: 19.24 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 2.65 Total: -38.83 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.52 Total: -83.67 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -59.22 2.51 -56.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251310323.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.427 kcal (2) G-P(sol) polarization free energy of solvation -59.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds