Wall clock time and date at job start Sun Mar 29 2020 21:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99964 * 2 1 4 4 H 1.48505 * 109.46934 * 239.99737 * 3 2 1 5 5 H 1.48491 * 109.47352 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47046 * 120.00067 * 3 2 1 7 7 C 1.38751 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99799 * 179.97438 * 7 2 1 9 9 N 1.36822 * 119.99887 * 0.02562 * 7 2 1 10 10 C 1.39468 * 119.99596 * 179.97438 * 9 7 2 11 11 C 1.39643 * 120.41800 * 179.97438 * 10 9 7 12 12 C 1.38162 * 118.42764 * 179.70007 * 11 10 9 13 13 C 1.39191 * 119.19338 * 0.28096 * 12 11 10 14 14 N 1.39130 * 119.61163 * 179.97438 * 13 12 11 15 15 N 1.32399 * 120.78489 * 0.02562 * 13 12 11 16 16 C 1.31900 * 121.71057 * 359.97438 * 15 13 12 17 17 H 0.97004 * 119.99977 * 359.97438 * 1 2 3 18 18 H 0.96994 * 120.00162 * 359.97438 * 9 7 2 19 19 H 1.08002 * 120.79060 * 359.97438 * 11 10 9 20 20 H 1.07994 * 120.40577 * 180.25490 * 12 11 10 21 21 H 0.96998 * 119.99562 * 0.02562 * 14 13 12 22 22 H 0.96999 * 120.00599 * 179.97438 * 14 13 12 23 23 H 1.08003 * 119.63391 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0100 -1.2016 0.0005 8 1 3.0900 -1.2016 0.0001 9 7 1.3258 -2.3865 0.0005 10 6 2.0232 -3.5943 0.0005 11 6 1.3339 -4.8088 0.0011 12 6 2.0659 -5.9805 -0.0053 13 6 3.4561 -5.9126 -0.0061 14 7 4.2018 -7.0871 -0.0119 15 7 4.0774 -4.7434 -0.0002 16 6 3.4119 -3.6046 0.0060 17 1 -0.4850 0.8401 0.0004 18 1 0.3559 -2.3865 0.0005 19 1 0.2541 -4.8316 0.0019 20 1 1.5655 -6.9375 -0.0092 21 1 3.7525 -7.9468 -0.0158 22 1 5.1710 -7.0464 -0.0128 23 1 3.9530 -2.6699 0.0102 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260086260.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:58 Heat of formation + Delta-G solvation = 18.132205 kcal Electronic energy + Delta-G solvation = -9964.723639 eV Core-core repulsion = 8004.780747 eV Total energy + Delta-G solvation = -1959.942892 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 179.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.72306 -37.41263 -34.79020 -33.44280 -32.40978 -28.59045 -26.48491 -24.13699 -22.71417 -19.78342 -18.25567 -17.77380 -17.42917 -16.27477 -15.68003 -15.08247 -14.95858 -14.77026 -13.82655 -13.64174 -13.26751 -12.86121 -12.50115 -12.25942 -12.06620 -11.05218 -10.52045 -10.13055 -9.90221 -8.38916 -7.94549 -5.58731 0.62109 1.00896 1.44553 1.53529 1.54703 2.33438 3.02795 3.07400 3.49831 3.56831 4.07948 4.37068 4.51083 4.76275 5.09136 5.32047 5.36301 5.58844 5.76579 6.05802 6.84522 6.89798 6.96136 7.57312 7.71252 7.82603 8.79982 Molecular weight = 179.08amu Principal moments of inertia in cm(-1) A = 0.089699 B = 0.010307 C = 0.009275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.081252 B = 2715.991663 C = 3018.222856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.035 4.035 3 Si 0.993 3.007 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.311 4.311 8 H 0.100 0.900 9 N -0.593 5.593 10 C 0.109 3.891 11 C -0.161 4.161 12 C -0.164 4.164 13 C 0.283 3.717 14 N -0.856 5.856 15 N -0.517 5.517 16 C 0.009 3.991 17 H 0.271 0.729 18 H 0.391 0.609 19 H 0.134 0.866 20 H 0.154 0.846 21 H 0.412 0.588 22 H 0.398 0.602 23 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.617 -8.593 -0.015 9.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.232 4.232 3 Si 0.818 3.182 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.441 4.441 8 H 0.118 0.882 9 N -0.202 5.202 10 C -0.008 4.008 11 C -0.193 4.193 12 C -0.189 4.189 13 C 0.045 3.955 14 N -0.407 5.407 15 N -0.234 5.234 16 C -0.154 4.154 17 H 0.080 0.920 18 H 0.225 0.775 19 H 0.151 0.849 20 H 0.172 0.828 21 H 0.243 0.757 22 H 0.227 0.773 23 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.381 -8.081 -0.015 9.192 hybrid contribution -0.983 0.704 -0.005 1.209 sum 3.397 -7.376 -0.019 8.121 Atomic orbital electron populations 1.69795 1.07147 1.28741 1.52128 1.26037 0.96526 1.02580 0.98087 0.84949 0.77512 0.76653 0.79116 1.19343 1.20737 1.19324 1.19871 0.93089 0.83800 1.47315 0.88234 1.40667 1.07188 1.01626 1.70758 1.18991 0.93348 0.87437 1.01049 1.20893 0.99971 0.90610 1.07805 1.21241 0.92439 0.98957 1.06260 1.18301 0.88921 0.87035 1.01288 1.41648 1.08434 1.03365 1.87229 1.66787 1.41091 0.97772 1.17702 1.21600 0.89971 0.94818 1.09019 0.91959 0.77527 0.84865 0.82839 0.75663 0.77336 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.36 13.05 21.64 0.28 -52.07 14 2 C -0.03 -1.84 5.50 84.85 0.47 -1.38 14 3 Si 0.99 42.22 29.55 68.60 2.03 44.25 14 4 H -0.27 -11.04 7.11 99.48 0.71 -10.34 14 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 14 6 H -0.27 -11.03 7.11 99.48 0.71 -10.33 14 7 C -0.31 -16.66 9.56 84.04 0.80 -15.85 14 8 H 0.10 5.13 5.70 -2.91 -0.02 5.12 14 9 N -0.59 -30.41 5.44 -183.94 -1.00 -31.41 14 10 C 0.11 5.02 6.64 38.42 0.26 5.28 14 11 C -0.16 -6.27 10.04 22.59 0.23 -6.04 14 12 C -0.16 -5.50 9.93 22.48 0.22 -5.28 14 13 C 0.28 10.11 7.75 133.03 1.03 11.14 14 14 N -0.86 -21.77 9.08 -55.32 -0.50 -22.27 14 15 N -0.52 -21.80 10.38 -192.49 -2.00 -23.80 14 16 C 0.01 0.42 10.47 84.83 0.89 1.30 14 17 H 0.27 14.40 8.31 -92.71 -0.77 13.63 14 18 H 0.39 20.44 7.91 -92.71 -0.73 19.70 14 19 H 0.13 4.65 8.06 -2.91 -0.02 4.63 14 20 H 0.15 3.82 8.06 -2.91 -0.02 3.79 14 21 H 0.41 7.55 8.82 -92.71 -0.82 6.73 14 22 H 0.40 9.40 8.95 -92.71 -0.83 8.57 14 23 H 0.14 6.37 5.97 -2.91 -0.02 6.35 14 Total: -1.00 -60.95 210.50 1.59 -59.36 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -1.11 Total: 36.78 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 3.89 Total: -10.84 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -3.22 Total: -129.55 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -60.95 1.59 -59.36 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260086260.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.492 kcal (2) G-P(sol) polarization free energy of solvation -60.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds