Wall clock time and date at job start Sun Mar 29 2020 22:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46921 * 2 1 4 4 H 1.08995 * 109.47404 * 304.99847 * 3 2 1 5 5 C 1.52998 * 109.46814 * 184.99745 * 3 2 1 6 6 N 1.46903 * 109.47185 * 65.00342 * 3 2 1 7 7 C 1.47962 * 111.00056 * 179.97438 * 6 3 2 8 8 C 1.53935 * 86.30001 * 137.63674 * 7 6 3 9 9 C 1.50709 * 113.72997 * 221.86389 * 8 7 6 10 10 H 1.07993 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00037 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99825 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00222 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47235 * 59.99553 * 13 11 9 15 15 H 1.48499 * 109.47203 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46989 * 299.99938 * 13 11 9 17 17 C 1.48308 * 111.10591 * 279.24615 * 6 3 2 18 18 H 1.08999 * 109.47200 * 300.00165 * 1 2 3 19 19 H 1.09008 * 109.47251 * 59.99847 * 1 2 3 20 20 H 1.08998 * 109.47355 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47089 * 240.00609 * 2 1 3 22 22 H 1.08992 * 109.46897 * 119.99961 * 2 1 3 23 23 H 1.09000 * 109.47626 * 299.99955 * 5 3 2 24 24 H 1.09005 * 109.47219 * 60.00731 * 5 3 2 25 25 H 1.09002 * 109.47269 * 179.97438 * 5 3 2 26 26 H 1.09002 * 113.76087 * 23.26139 * 7 6 3 27 27 H 1.09005 * 113.75858 * 252.00601 * 7 6 3 28 28 H 1.08999 * 113.73844 * 90.69316 * 8 7 6 29 29 H 0.96998 * 120.00176 * 180.02562 * 12 11 9 30 30 H 1.09003 * 113.75437 * 108.13284 * 17 6 3 31 31 H 1.08998 * 113.85723 * 336.78984 * 17 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 1.6514 2.0993 1.2553 7 6 2.1292 3.4992 1.2913 8 6 0.7505 3.8496 1.8796 9 6 0.1518 5.1109 1.3123 10 1 0.6887 5.6741 0.5635 11 6 -1.0815 5.5457 1.7492 12 7 -1.7356 4.8595 2.6608 13 14 -1.8239 7.1087 1.0455 14 1 -1.9958 6.9580 -0.4217 15 1 -3.1457 7.3560 1.6755 16 1 -0.9206 8.2542 1.3230 17 6 0.2438 2.5634 1.2017 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5137 -0.8900 22 1 1.8933 -0.5138 0.8899 23 1 3.9994 0.9053 0.7161 24 1 3.8532 0.9571 -1.0571 25 1 3.9281 2.4720 -0.1261 26 1 2.3077 3.9278 0.3052 27 1 2.9561 3.6633 1.9823 28 1 0.7167 3.8159 2.9686 29 1 -2.6034 5.1652 2.9680 30 1 -0.4354 1.9781 1.8217 31 1 -0.1311 2.7185 0.1901 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260371336.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:57 Heat of formation + Delta-G solvation = -0.162877 kcal Electronic energy + Delta-G solvation = -11525.680735 eV Core-core repulsion = 9613.861896 eV Total energy + Delta-G solvation = -1911.818840 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77615 -35.96430 -34.25648 -31.42650 -29.07782 -26.49237 -25.80481 -24.20933 -21.15397 -20.38100 -18.46954 -17.21673 -16.52974 -15.86189 -15.33085 -14.78413 -14.48258 -13.99926 -13.69480 -13.26298 -13.02881 -12.89491 -12.86926 -12.53953 -12.35842 -12.29841 -11.73478 -11.60771 -11.24775 -10.91464 -10.82288 -10.43731 -9.52031 -8.14726 -6.26121 1.41690 1.43019 1.51009 2.41915 3.14338 3.27279 3.98310 4.00976 4.19745 4.41477 4.50705 4.56130 4.63871 4.70720 4.79992 4.87357 4.91664 4.99805 5.11303 5.20265 5.21450 5.26777 5.37119 5.52893 5.63432 5.65018 5.86387 6.30858 6.48293 6.82294 7.41730 8.94484 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.057414 B = 0.011004 C = 0.010196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.569392 B = 2543.925075 C = 2745.399141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.102 4.102 3 C 0.037 3.963 4 H 0.030 0.970 5 C -0.137 4.137 6 N -0.483 5.483 7 C 0.016 3.984 8 C 0.014 3.986 9 C -0.534 4.534 10 H 0.056 0.944 11 C 0.014 3.986 12 N -0.921 5.921 13 Si 0.957 3.043 14 H -0.270 1.270 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.034 3.966 18 H 0.047 0.953 19 H 0.044 0.956 20 H 0.066 0.934 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.263 0.737 30 H 0.053 0.947 31 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.847 -6.308 -6.097 10.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.140 4.140 3 C -0.072 4.072 4 H 0.048 0.952 5 C -0.194 4.194 6 N -0.207 5.207 7 C -0.113 4.113 8 C -0.005 4.005 9 C -0.572 4.572 10 H 0.074 0.926 11 C -0.185 4.185 12 N -0.560 5.560 13 Si 0.782 3.218 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.095 4.095 18 H 0.066 0.934 19 H 0.063 0.937 20 H 0.085 0.915 21 H 0.101 0.899 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.908 -6.805 -5.511 10.564 hybrid contribution -0.956 1.348 -0.756 1.818 sum 4.952 -5.456 -6.267 9.674 Atomic orbital electron populations 1.22013 0.96677 1.01751 1.01556 1.21435 0.95481 0.94650 1.02426 1.22334 0.97192 0.96413 0.91307 0.95235 1.21776 0.93186 1.01897 1.02555 1.68569 1.05862 1.13873 1.32395 1.23825 0.98650 0.89238 0.99603 1.20379 0.91827 0.93169 0.95167 1.21400 1.03474 1.09330 1.22994 0.92552 1.25822 0.97622 1.00015 0.95029 1.70086 1.14523 1.40595 1.30755 0.85637 0.77549 0.79919 0.78724 1.19512 1.20931 1.19396 1.23813 0.90360 0.96835 0.98467 0.93368 0.93720 0.91548 0.89947 0.91675 0.92010 0.90412 0.93213 0.92446 0.90699 0.95732 0.92858 0.92896 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 9.00 71.98 0.65 -4.32 16 2 C -0.10 -2.91 5.61 30.59 0.17 -2.74 16 3 C 0.04 1.21 2.00 44.91 0.09 1.30 16 4 H 0.03 1.05 7.63 -2.39 -0.02 1.04 16 5 C -0.14 -3.69 9.09 71.98 0.65 -3.03 16 6 N -0.48 -19.69 5.98 -879.24 -5.26 -24.95 16 7 C 0.02 0.66 6.27 86.41 0.54 1.20 16 8 C 0.01 0.71 3.61 -10.88 -0.04 0.67 16 9 C -0.53 -29.77 8.77 25.60 0.22 -29.55 16 10 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 11 C 0.01 0.81 5.46 84.65 0.46 1.27 16 12 N -0.92 -54.55 13.27 21.45 0.28 -54.27 16 13 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 C 0.03 1.61 5.18 86.35 0.45 2.06 16 18 H 0.05 1.74 4.90 -2.39 -0.01 1.73 16 19 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 20 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 21 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.05 1.38 7.02 -2.39 -0.02 1.37 16 26 H 0.06 2.39 7.61 -2.39 -0.02 2.37 16 27 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 28 H 0.02 1.43 8.13 -2.39 -0.02 1.41 16 29 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.05 2.63 6.87 -2.39 -0.02 2.61 16 31 H 0.04 2.17 7.42 -2.39 -0.02 2.15 16 Total: -1.00 -59.72 247.79 1.33 -58.40 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.07 Total: 8.27 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 3.20 Total: -33.13 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -4.97 Total: -79.22 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -59.72 1.33 -58.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260371336.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.233 kcal (2) G-P(sol) polarization free energy of solvation -59.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds