Wall clock time and date at job start Sun Mar 29 2020 22:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.05637 * 2 1 4 4 C 1.53867 * 110.03128 * 121.41542 * 2 1 3 5 5 C 1.54274 * 106.59814 * 119.28794 * 4 2 1 6 6 C 1.54888 * 104.19243 * 23.60585 * 5 4 2 7 7 H 1.08999 * 110.91261 * 80.45165 * 6 5 4 8 8 N 1.46500 * 110.75453 * 203.74340 * 6 5 4 9 9 C 1.46505 * 119.99956 * 53.33125 * 8 6 5 10 10 C 1.36930 * 120.00349 * 233.33297 * 8 6 5 11 11 H 1.08003 * 119.99895 * 333.65429 * 10 8 6 12 12 C 1.38814 * 120.00326 * 153.65735 * 10 8 6 13 13 N 1.31619 * 119.99647 * 331.78406 * 12 10 8 14 14 Si 1.86802 * 120.00136 * 151.78991 * 12 10 8 15 15 H 1.48498 * 109.47054 * 179.97438 * 14 12 10 16 16 H 1.48495 * 109.46877 * 299.99803 * 14 12 10 17 17 H 1.48502 * 109.46862 * 59.99941 * 14 12 10 18 18 C 1.54266 * 110.03203 * 238.58748 * 2 1 3 19 19 H 1.08999 * 109.47084 * 181.41691 * 1 2 3 20 20 H 1.08998 * 109.46953 * 301.41654 * 1 2 3 21 21 H 1.09001 * 109.47152 * 61.41293 * 1 2 3 22 22 H 1.09004 * 110.03410 * 238.56563 * 4 2 1 23 23 H 1.08999 * 110.03491 * 0.02562 * 4 2 1 24 24 H 1.09001 * 110.48304 * 264.93321 * 5 4 2 25 25 H 1.08992 * 110.49047 * 142.28870 * 5 4 2 26 26 H 1.08994 * 109.47511 * 267.11881 * 9 8 6 27 27 H 1.09004 * 109.46680 * 27.11276 * 9 8 6 28 28 H 1.08997 * 109.47380 * 147.11261 * 9 8 6 29 29 H 0.96999 * 119.99818 * 354.40224 * 13 12 10 30 30 H 1.08990 * 110.48699 * 98.42368 * 18 2 1 31 31 H 1.09000 * 110.48454 * 335.77739 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0571 -0.7535 1.2337 5 6 2.8876 -1.9406 0.7035 6 6 3.3137 -1.5007 -0.7192 7 1 4.1718 -0.8298 -0.6782 8 7 3.6078 -2.6661 -1.5567 9 6 2.6177 -3.7370 -1.6956 10 6 4.8082 -2.7546 -2.2096 11 1 5.3474 -1.8565 -2.4726 12 6 5.3321 -3.9986 -2.5336 13 7 5.0391 -5.0484 -1.7958 14 14 6.4529 -4.1826 -4.0166 15 1 6.8755 -5.6004 -4.1448 16 1 5.7235 -3.7702 -5.2425 17 1 7.6513 -3.3233 -3.8409 18 6 2.0585 -0.7554 -1.2369 19 1 -0.3633 -1.0273 0.0254 20 1 -0.3633 0.5357 0.8770 21 1 -0.3633 0.4917 -0.9024 22 1 2.6868 -0.0953 1.8324 23 1 1.2229 -1.1196 1.8322 24 1 2.2772 -2.8425 0.6570 25 1 3.7638 -2.1037 1.3309 26 1 2.8101 -4.5086 -0.9503 27 1 1.6180 -3.3290 -1.5464 28 1 2.6883 -4.1699 -2.6934 29 1 4.5246 -4.9400 -0.9807 30 1 2.3297 -0.0535 -2.0254 31 1 1.3143 -1.4659 -1.5966 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306572405.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:43 Heat of formation + Delta-G solvation = -19.161287 kcal Electronic energy + Delta-G solvation = -11626.312570 eV Core-core repulsion = 9713.669897 eV Total energy + Delta-G solvation = -1912.642672 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.77529 -36.76239 -33.19435 -31.05864 -29.09738 -28.09169 -25.86333 -23.98070 -20.70489 -20.43596 -19.44427 -16.97862 -16.56399 -15.71874 -15.48832 -14.81371 -14.59140 -14.02504 -13.76025 -13.46829 -12.88369 -12.77273 -12.48620 -12.42435 -12.11863 -11.89915 -11.75802 -11.64669 -11.49137 -11.26712 -11.18843 -10.43461 -8.94482 -8.23416 -5.40688 1.56533 1.64392 1.83698 2.64985 3.18535 3.47076 3.80785 3.86393 4.08208 4.42360 4.50546 4.54915 4.64337 4.69178 4.74189 4.79104 4.87158 4.96462 5.05968 5.08363 5.16574 5.20758 5.33990 5.43954 5.48205 5.60554 5.83489 6.38230 7.07745 7.79319 8.20548 8.97304 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.075156 B = 0.010664 C = 0.010380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.468738 B = 2625.063138 C = 2696.906958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.108 4.108 5 C -0.137 4.137 6 C 0.161 3.839 7 H 0.052 0.948 8 N -0.613 5.613 9 C 0.150 3.850 10 C -0.366 4.366 11 H 0.048 0.952 12 C -0.075 4.075 13 N -0.938 5.938 14 Si 1.113 2.887 15 H -0.291 1.291 16 H -0.281 1.281 17 H -0.275 1.275 18 C -0.127 4.127 19 H 0.047 0.953 20 H 0.070 0.930 21 H 0.057 0.943 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.042 0.958 26 H -0.006 1.006 27 H 0.050 0.950 28 H 0.016 0.984 29 H 0.255 0.745 30 H 0.053 0.947 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 9.129 3.344 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.146 4.146 5 C -0.177 4.177 6 C 0.054 3.946 7 H 0.070 0.930 8 N -0.335 5.335 9 C 0.004 3.996 10 C -0.496 4.496 11 H 0.066 0.934 12 C -0.272 4.272 13 N -0.580 5.580 14 Si 0.937 3.063 15 H -0.216 1.216 16 H -0.207 1.207 17 H -0.201 1.201 18 C -0.166 4.166 19 H 0.066 0.934 20 H 0.089 0.911 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.012 0.988 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.738 8.040 2.414 10.764 hybrid contribution -0.566 0.715 0.993 1.348 sum -7.304 8.755 3.407 11.900 Atomic orbital electron populations 1.21830 0.93735 1.01599 1.02248 1.21672 0.96632 0.99039 0.93591 0.90266 1.22123 0.99198 0.95951 0.97290 1.22761 0.98832 0.98639 0.97433 1.21615 0.95542 0.88089 0.89321 0.92958 1.44161 1.14286 1.20940 1.54122 1.20699 0.91184 0.90272 0.97409 1.20192 1.00029 0.94184 1.35198 0.93388 1.27201 1.02036 0.92512 1.05413 1.70906 1.39486 1.33269 1.14327 0.82896 0.74620 0.75584 0.73186 1.21649 1.20696 1.20080 1.22803 0.97625 0.98504 0.97715 0.93366 0.91147 0.92408 0.91085 0.90691 0.93272 0.93945 0.98755 0.93108 0.96498 0.93456 0.92847 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.84 71.98 0.64 -2.36 16 2 C -0.09 -2.42 3.50 -10.07 -0.04 -2.45 16 3 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.11 -2.99 6.46 31.32 0.20 -2.78 16 5 C -0.14 -5.15 6.37 31.67 0.20 -4.95 16 6 C 0.16 6.93 3.39 46.28 0.16 7.09 16 7 H 0.05 2.36 7.95 -2.39 -0.02 2.35 16 8 N -0.61 -32.19 2.78 -695.58 -1.93 -34.12 16 9 C 0.15 7.51 7.67 127.77 0.98 8.49 16 10 C -0.37 -21.42 9.39 84.04 0.79 -20.63 16 11 H 0.05 2.81 7.97 -2.91 -0.02 2.79 16 12 C -0.07 -4.39 4.75 84.86 0.40 -3.99 16 13 N -0.94 -59.00 12.88 21.65 0.28 -58.72 16 14 Si 1.11 52.40 30.00 68.60 2.06 54.46 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 18 C -0.13 -4.44 5.91 31.67 0.19 -4.26 16 19 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 20 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.07 1.83 7.67 -2.39 -0.02 1.81 16 24 H 0.05 1.94 7.07 -2.39 -0.02 1.92 16 25 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 26 H -0.01 -0.30 6.51 -2.39 -0.02 -0.31 16 27 H 0.05 2.17 6.39 -2.38 -0.02 2.16 16 28 H 0.02 0.89 7.71 -2.39 -0.02 0.87 16 29 H 0.26 16.36 6.23 -92.71 -0.58 15.79 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 2.06 6.10 -2.39 -0.01 2.05 16 Total: -1.00 -65.58 243.85 5.19 -60.39 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.27 Total: 3.84 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 3.52 Total: -25.84 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -1.66 Total: -92.85 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 2.06 Total: 54.46 kcal Total: -65.58 5.19 -60.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306572405.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.229 kcal (2) G-P(sol) polarization free energy of solvation -65.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds