Wall clock time and date at job start Sun Mar 29 2020 21:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40590 * 127.38220 * 2 1 4 4 N 1.28911 * 106.81595 * 179.97438 * 3 2 1 5 5 N 1.28429 * 110.31774 * 359.73179 * 4 3 2 6 6 C 1.31470 * 110.50490 * 0.45118 * 5 4 3 7 7 N 1.38387 * 126.43786 * 179.81686 * 6 5 4 8 8 C 1.46498 * 119.99704 * 359.97230 * 7 6 5 9 9 C 1.50700 * 109.46769 * 179.72332 * 8 7 6 10 10 H 1.07997 * 120.00357 * 359.97438 * 9 8 7 11 11 C 1.37886 * 119.99789 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99999 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99952 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47050 * 90.00071 * 13 11 9 15 15 H 1.48500 * 109.47345 * 209.99736 * 13 11 9 16 16 H 1.48498 * 109.47548 * 330.00215 * 13 11 9 17 17 H 1.09002 * 109.47068 * 270.02577 * 1 2 3 18 18 H 1.08998 * 109.47190 * 30.02598 * 1 2 3 19 19 H 1.09010 * 109.46869 * 150.02541 * 1 2 3 20 20 H 0.97001 * 119.99851 * 179.68775 * 7 6 5 21 21 H 1.09004 * 109.46963 * 299.72125 * 8 7 6 22 22 H 1.08994 * 109.47567 * 59.72278 * 8 7 6 23 23 H 0.97000 * 119.99789 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3185 1.1171 0.0000 4 7 3.5255 0.6643 0.0006 5 7 3.5199 -0.6200 0.0065 6 6 2.2865 -1.0752 0.0005 7 7 1.9009 -2.4042 0.0007 8 6 2.9153 -3.4612 0.0074 9 6 2.2379 -4.8074 0.0130 10 1 1.1597 -4.8694 0.0120 11 6 2.9948 -5.9599 0.0192 12 7 2.4037 -7.1347 0.0246 13 14 4.8597 -5.8526 0.0201 14 1 5.3528 -5.8173 1.4205 15 1 5.4241 -7.0382 -0.6736 16 1 5.2849 -4.6172 -0.6856 17 1 -0.3633 0.0005 1.0277 18 1 -0.3633 0.8897 -0.5142 19 1 -0.3633 -0.8903 -0.5135 20 1 0.9590 -2.6359 0.0005 21 1 3.5389 -3.3719 -0.8821 22 1 3.5362 -3.3633 0.8978 23 1 2.9362 -7.9455 0.0286 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307281580.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:54 Heat of formation + Delta-G solvation = 120.331242 kcal Electronic energy + Delta-G solvation = -10655.929415 eV Core-core repulsion = 8542.254906 eV Total energy + Delta-G solvation = -2113.674509 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.081 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.28971 -36.16771 -34.44710 -32.72081 -30.61448 -28.21917 -27.22625 -23.05754 -22.28577 -20.90042 -18.06857 -16.61968 -16.31566 -15.73924 -15.09894 -13.94728 -13.65530 -13.30880 -13.16709 -12.57524 -12.31464 -11.70181 -11.12537 -11.04041 -10.48099 -10.34159 -10.04654 -9.97898 -9.64155 -8.83162 -7.79625 -6.32714 -4.37418 1.66643 2.12499 3.01599 3.21720 3.28938 3.36527 3.71356 4.24434 4.50355 5.02520 5.04884 5.20523 5.29450 5.84216 5.90934 6.28791 6.67309 6.88480 7.16519 7.38567 7.90764 8.22325 8.62717 9.13511 9.25519 10.78701 Molecular weight = 183.08amu Principal moments of inertia in cm(-1) A = 0.066701 B = 0.010749 C = 0.009320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.685780 B = 2604.360721 C = 3003.595885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.436 5.436 3 N -0.122 5.122 4 N -0.024 5.024 5 N -0.383 5.383 6 C 0.504 3.496 7 N -0.666 5.666 8 C 0.236 3.764 9 C -0.550 4.550 10 H 0.080 0.920 11 C 0.082 3.918 12 N -0.888 5.888 13 Si 0.876 3.124 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.257 1.257 17 H 0.080 0.920 18 H 0.095 0.905 19 H 0.089 0.911 20 H 0.410 0.590 21 H 0.031 0.969 22 H 0.027 0.973 23 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.142 9.028 -0.135 9.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.241 5.241 3 N -0.111 5.111 4 N -0.021 5.021 5 N -0.249 5.249 6 C 0.139 3.861 7 N -0.308 5.308 8 C 0.115 3.885 9 C -0.588 4.588 10 H 0.098 0.902 11 C -0.123 4.123 12 N -0.525 5.525 13 Si 0.702 3.298 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.181 1.181 17 H 0.098 0.902 18 H 0.114 0.886 19 H 0.107 0.893 20 H 0.247 0.753 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.027 9.673 -0.136 10.137 hybrid contribution -0.499 -0.817 0.032 0.958 sum -3.526 8.856 -0.104 9.533 Atomic orbital electron populations 1.21890 0.73591 1.04929 1.03870 1.51065 1.08619 1.03993 1.60448 1.82341 0.95014 1.05980 1.27814 1.77734 1.13344 1.03120 1.07902 1.74848 1.15051 1.02529 1.32450 1.21932 0.86760 0.85269 0.92174 1.44383 1.11277 0.97774 1.77325 1.19683 0.87117 0.84236 0.97481 1.20959 0.95507 0.87900 1.54415 0.90158 1.24744 0.99177 0.94840 0.93567 1.69863 1.36362 0.97612 1.48629 0.86824 0.84994 0.78703 0.79296 1.19651 1.20762 1.18130 0.90191 0.88621 0.89273 0.75262 0.95071 0.95521 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.99 11.41 59.84 0.68 1.68 14 2 N -0.44 -7.00 4.09 -68.66 -0.28 -7.28 14 3 N -0.12 -2.23 13.93 60.35 0.84 -1.39 14 4 N -0.02 -0.50 13.38 60.35 0.81 0.31 14 5 N -0.38 -8.19 11.84 30.10 0.36 -7.84 14 6 C 0.50 9.58 8.71 -320.40 -2.79 6.79 14 7 N -0.67 -12.62 5.70 -63.03 -0.36 -12.98 14 8 C 0.24 5.38 4.84 -5.19 -0.03 5.36 14 9 C -0.55 -14.18 9.83 -34.44 -0.34 -14.52 14 10 H 0.08 2.15 7.84 -52.49 -0.41 1.74 14 11 C 0.08 2.20 5.47 -17.82 -0.10 2.10 14 12 N -0.89 -25.34 13.96 55.43 0.77 -24.57 14 13 Si 0.88 20.41 27.47 -169.99 -4.67 15.74 14 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 14 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 14 16 H -0.26 -5.90 6.54 56.52 0.37 -5.53 14 17 H 0.08 0.66 8.14 -51.93 -0.42 0.24 14 18 H 0.10 0.77 8.14 -51.93 -0.42 0.34 14 19 H 0.09 0.73 7.64 -51.92 -0.40 0.34 14 20 H 0.41 6.67 7.75 -40.82 -0.32 6.35 14 21 H 0.03 0.74 7.20 -51.93 -0.37 0.37 14 22 H 0.03 0.63 7.57 -51.93 -0.39 0.24 14 23 H 0.27 7.21 8.31 -40.82 -0.34 6.87 14 LS Contribution 213.96 15.07 3.22 3.22 Total: -1.00 -30.58 213.96 -3.78 -34.35 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -1.90 Total: -0.98 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -2.57 Total: 1.41 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 2.14 Total: -53.74 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -30.58 -3.78 -34.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307281580.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.685 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds