Wall clock time and date at job start Sun Mar 29 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47057 * 2 1 4 4 N 1.46506 * 109.47046 * 119.99127 * 2 1 3 5 5 C 1.46499 * 119.99469 * 52.95680 * 4 2 1 6 6 C 1.36938 * 120.00317 * 232.95296 * 4 2 1 7 7 H 1.07999 * 119.99666 * 7.23543 * 6 4 2 8 8 C 1.38805 * 119.99613 * 187.23198 * 6 4 2 9 9 N 1.31618 * 120.00584 * 18.39223 * 8 6 4 10 10 Si 1.86808 * 119.99691 * 198.39127 * 8 6 4 11 11 H 1.48499 * 109.47025 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47347 * 119.99910 * 10 8 6 13 13 H 1.48500 * 109.47026 * 239.99879 * 10 8 6 14 14 C 1.52993 * 109.47317 * 239.99759 * 2 1 3 15 15 C 1.53009 * 115.54690 * 280.12974 * 14 2 1 16 16 C 1.52998 * 117.49934 * 134.42724 * 14 2 1 17 17 C 1.52998 * 117.50242 * 65.79935 * 14 2 1 18 18 H 1.08995 * 109.46894 * 300.00519 * 1 2 3 19 19 H 1.09005 * 109.46689 * 60.00689 * 1 2 3 20 20 H 1.08994 * 109.46563 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47243 * 354.27905 * 5 4 2 22 22 H 1.08994 * 109.47174 * 114.28479 * 5 4 2 23 23 H 1.09001 * 109.46929 * 234.28730 * 5 4 2 24 24 H 0.97001 * 120.00065 * 180.02562 * 9 8 6 25 25 H 1.08994 * 109.46953 * 62.82945 * 15 14 2 26 26 H 1.08998 * 109.46735 * 182.82444 * 15 14 2 27 27 H 1.08997 * 109.46884 * 302.82522 * 15 14 2 28 28 H 1.08995 * 117.49986 * 359.97438 * 16 14 2 29 29 H 1.09007 * 117.49995 * 145.02253 * 16 14 2 30 30 H 1.09001 * 117.50191 * 214.97801 * 17 14 2 31 31 H 1.08997 * 117.49449 * 0.02562 * 17 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.5419 -2.0401 1.5088 6 6 2.9202 -0.0744 2.0223 7 1 3.1829 0.9604 1.8589 8 6 3.4966 -0.7798 3.0696 9 7 3.4750 -2.0958 3.0674 10 14 4.3031 0.1387 4.4823 11 1 4.1939 1.6011 4.2484 12 1 3.6206 -0.2110 5.7539 13 1 5.7355 -0.2439 4.5678 14 6 2.0401 -0.7213 -1.2491 15 6 2.0311 -2.2497 -1.1784 16 6 3.1712 -0.0566 -2.0363 17 6 1.7511 -0.0751 -2.6055 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3632 -1.0276 0.0005 21 1 0.7611 -2.3223 0.8025 22 1 2.3706 -2.7442 1.4348 23 1 1.1393 -2.0578 2.5216 24 1 3.8775 -2.5887 3.7995 25 1 1.0058 -2.6022 -1.0669 26 1 2.4581 -2.6582 -2.0943 27 1 2.6231 -2.5773 -0.3239 28 1 3.5518 0.8946 -1.6645 29 1 3.9094 -0.7082 -2.5040 30 1 1.5551 -0.7388 -3.4477 31 1 1.1980 0.8641 -2.6079 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307367087.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:33 Heat of formation + Delta-G solvation = 49.994741 kcal Electronic energy + Delta-G solvation = -11819.009832 eV Core-core repulsion = 9909.365990 eV Total energy + Delta-G solvation = -1909.643842 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.27173 -34.82596 -31.57703 -28.79826 -28.03989 -25.64533 -23.71138 -21.73824 -20.79319 -17.83948 -16.78800 -15.10638 -14.58016 -14.06789 -13.40493 -13.22695 -12.62813 -12.16866 -11.76074 -11.69275 -11.23976 -11.09892 -10.74885 -10.71720 -10.49969 -10.25254 -10.05944 -9.83903 -9.64567 -9.47136 -8.83399 -8.43562 -6.78241 -5.56756 -2.97793 3.43825 3.51079 3.52987 4.39641 4.59454 5.29587 5.41793 5.50204 5.53354 5.77043 5.94617 6.08082 6.08791 6.28496 6.37010 6.41559 6.45835 6.51165 6.65279 6.75406 6.90852 6.95893 7.05672 7.17630 7.56887 7.83752 7.98186 8.46976 9.34480 10.00437 10.44430 11.42152 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052441 B = 0.013116 C = 0.012767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.806047 B = 2134.343221 C = 2192.677821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.207 3.793 3 H 0.059 0.941 4 N -0.596 5.596 5 C 0.156 3.844 6 C -0.241 4.241 7 H 0.072 0.928 8 C -0.007 4.007 9 N -0.911 5.911 10 Si 0.900 3.100 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.293 1.293 14 C -0.119 4.119 15 C -0.115 4.115 16 C -0.173 4.173 17 C -0.191 4.191 18 H 0.050 0.950 19 H 0.043 0.957 20 H 0.050 0.950 21 H 0.007 0.993 22 H 0.061 0.939 23 H 0.015 0.985 24 H 0.248 0.752 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 1.938 -7.537 8.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.099 3.901 3 H 0.077 0.923 4 N -0.317 5.317 5 C 0.012 3.988 6 C -0.371 4.371 7 H 0.090 0.910 8 C -0.203 4.203 9 N -0.559 5.559 10 Si 0.731 3.269 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.221 1.221 14 C -0.121 4.121 15 C -0.172 4.172 16 C -0.210 4.210 17 C -0.229 4.229 18 H 0.070 0.930 19 H 0.062 0.938 20 H 0.069 0.931 21 H 0.025 0.975 22 H 0.079 0.921 23 H 0.033 0.967 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.702 1.826 -7.379 8.455 hybrid contribution 0.549 0.426 0.734 1.010 sum -3.153 2.252 -6.646 7.693 Atomic orbital electron populations 1.22197 0.98048 1.01188 1.00027 1.19840 0.91572 0.94332 0.84398 0.92296 1.44052 1.49070 1.15390 1.23206 1.21202 0.95994 0.86272 0.95335 1.19337 1.17345 0.94326 1.06071 0.91027 1.24734 1.00320 0.95354 0.99923 1.70143 1.49066 1.04638 1.32030 0.86230 0.78486 0.79073 0.83129 1.20579 1.21812 1.22068 1.22386 1.01410 0.95747 0.92595 1.21553 1.01310 0.92602 1.01723 1.22894 0.91190 1.02414 1.04531 1.22965 0.99657 1.02476 0.97783 0.93049 0.93801 0.93066 0.97477 0.92119 0.96675 0.94105 0.93148 0.94762 0.89479 0.89437 0.89916 0.89986 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 8.96 37.16 0.33 -2.51 16 2 C 0.21 4.35 2.81 -67.93 -0.19 4.16 16 3 H 0.06 1.26 7.60 -51.93 -0.39 0.87 16 4 N -0.60 -15.05 2.69 -173.48 -0.47 -15.52 16 5 C 0.16 3.89 6.55 59.85 0.39 4.28 16 6 C -0.24 -6.74 9.75 -15.06 -0.15 -6.89 16 7 H 0.07 1.96 7.73 -52.49 -0.41 1.56 16 8 C -0.01 -0.19 5.23 -17.43 -0.09 -0.29 16 9 N -0.91 -26.86 10.10 55.49 0.56 -26.30 16 10 Si 0.90 22.35 29.59 -169.99 -5.03 17.32 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 C -0.12 -2.24 1.91 -154.51 -0.29 -2.53 16 15 C -0.12 -2.17 8.01 37.16 0.30 -1.87 16 16 C -0.17 -3.02 9.88 -26.73 -0.26 -3.29 16 17 C -0.19 -2.98 9.55 -26.73 -0.26 -3.24 16 18 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 19 H 0.04 0.68 7.70 -51.93 -0.40 0.28 16 20 H 0.05 0.93 6.36 -51.93 -0.33 0.60 16 21 H 0.01 0.15 4.48 -51.93 -0.23 -0.08 16 22 H 0.06 1.65 5.41 -51.93 -0.28 1.37 16 23 H 0.01 0.40 7.72 -51.93 -0.40 0.00 16 24 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.05 0.89 6.88 -51.93 -0.36 0.54 16 26 H 0.03 0.57 8.11 -51.93 -0.42 0.15 16 27 H 0.09 1.93 5.35 -51.93 -0.28 1.65 16 28 H 0.09 1.53 8.09 -51.93 -0.42 1.11 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.24 7.98 -51.93 -0.41 0.83 16 LS Contribution 242.48 15.07 3.65 3.65 Total: -1.00 -29.10 242.48 -6.24 -35.34 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.74 Total: -2.33 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.22 Total: -12.17 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.09 Total: -41.81 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.10 -6.24 -35.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307367087.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.333 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds