Wall clock time and date at job start Sun Mar 29 2020 22:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47057 * 2 1 4 4 N 1.46506 * 109.47046 * 119.99127 * 2 1 3 5 5 C 1.46499 * 119.99469 * 52.95680 * 4 2 1 6 6 C 1.36938 * 120.00317 * 232.95296 * 4 2 1 7 7 H 1.07999 * 119.99666 * 7.23543 * 6 4 2 8 8 C 1.38805 * 119.99613 * 187.23198 * 6 4 2 9 9 N 1.31618 * 120.00584 * 18.39223 * 8 6 4 10 10 Si 1.86808 * 119.99691 * 198.39127 * 8 6 4 11 11 H 1.48499 * 109.47025 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47347 * 119.99910 * 10 8 6 13 13 H 1.48500 * 109.47026 * 239.99879 * 10 8 6 14 14 C 1.52993 * 109.47317 * 239.99759 * 2 1 3 15 15 C 1.53009 * 115.54690 * 280.12974 * 14 2 1 16 16 C 1.52998 * 117.49934 * 134.42724 * 14 2 1 17 17 C 1.52998 * 117.50242 * 65.79935 * 14 2 1 18 18 H 1.08995 * 109.46894 * 300.00519 * 1 2 3 19 19 H 1.09005 * 109.46689 * 60.00689 * 1 2 3 20 20 H 1.08994 * 109.46563 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47243 * 354.27905 * 5 4 2 22 22 H 1.08994 * 109.47174 * 114.28479 * 5 4 2 23 23 H 1.09001 * 109.46929 * 234.28730 * 5 4 2 24 24 H 0.97001 * 120.00065 * 180.02562 * 9 8 6 25 25 H 1.08994 * 109.46953 * 62.82945 * 15 14 2 26 26 H 1.08998 * 109.46735 * 182.82444 * 15 14 2 27 27 H 1.08997 * 109.46884 * 302.82522 * 15 14 2 28 28 H 1.08995 * 117.49986 * 359.97438 * 16 14 2 29 29 H 1.09007 * 117.49995 * 145.02253 * 16 14 2 30 30 H 1.09001 * 117.50191 * 214.97801 * 17 14 2 31 31 H 1.08997 * 117.49449 * 0.02562 * 17 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.5419 -2.0401 1.5088 6 6 2.9202 -0.0744 2.0223 7 1 3.1829 0.9604 1.8589 8 6 3.4966 -0.7798 3.0696 9 7 3.4750 -2.0958 3.0674 10 14 4.3031 0.1387 4.4823 11 1 4.1939 1.6011 4.2484 12 1 3.6206 -0.2110 5.7539 13 1 5.7355 -0.2439 4.5678 14 6 2.0401 -0.7213 -1.2491 15 6 2.0311 -2.2497 -1.1784 16 6 3.1712 -0.0566 -2.0363 17 6 1.7511 -0.0751 -2.6055 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3632 -1.0276 0.0005 21 1 0.7611 -2.3223 0.8025 22 1 2.3706 -2.7442 1.4348 23 1 1.1393 -2.0578 2.5216 24 1 3.8775 -2.5887 3.7995 25 1 1.0058 -2.6022 -1.0669 26 1 2.4581 -2.6582 -2.0943 27 1 2.6231 -2.5773 -0.3239 28 1 3.5518 0.8946 -1.6645 29 1 3.9094 -0.7082 -2.5040 30 1 1.5551 -0.7388 -3.4477 31 1 1.1980 0.8641 -2.6079 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307367087.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:32 Heat of formation + Delta-G solvation = 33.491110 kcal Electronic energy + Delta-G solvation = -11819.725484 eV Core-core repulsion = 9909.365990 eV Total energy + Delta-G solvation = -1910.359493 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81743 -36.64197 -33.50418 -30.55661 -29.67758 -27.56040 -25.53084 -23.05476 -22.57144 -19.39673 -18.84470 -16.97211 -16.20071 -15.84022 -15.00439 -14.97895 -14.51176 -13.76264 -13.42875 -13.17915 -12.99627 -12.69936 -12.59499 -12.35328 -12.21196 -12.14837 -11.90097 -11.71958 -11.36917 -11.02838 -10.52963 -10.27028 -8.83416 -7.70865 -5.13498 1.45413 1.47270 1.57028 2.53375 3.03537 3.34526 3.73090 3.95614 4.09745 4.28718 4.38889 4.57938 4.71956 4.84755 4.85739 4.97747 4.99354 5.09434 5.15724 5.27325 5.36114 5.39381 5.41738 5.56944 5.65533 5.67603 5.91418 6.37000 7.21441 7.98230 8.36600 9.25993 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052441 B = 0.013116 C = 0.012767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.806047 B = 2134.343221 C = 2192.677821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.199 3.801 3 H 0.050 0.950 4 N -0.609 5.609 5 C 0.178 3.822 6 C -0.249 4.249 7 H 0.072 0.928 8 C -0.063 4.063 9 N -0.940 5.940 10 Si 0.962 3.038 11 H -0.269 1.269 12 H -0.294 1.294 13 H -0.295 1.295 14 C -0.146 4.146 15 C -0.107 4.107 16 C -0.185 4.185 17 C -0.152 4.152 18 H 0.040 0.960 19 H 0.076 0.924 20 H 0.050 0.950 21 H 0.037 0.963 22 H 0.034 0.966 23 H -0.018 1.018 24 H 0.243 0.757 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.518 2.913 -9.101 10.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.092 3.908 3 H 0.068 0.932 4 N -0.331 5.331 5 C 0.034 3.966 6 C -0.379 4.379 7 H 0.090 0.910 8 C -0.256 4.256 9 N -0.589 5.589 10 Si 0.792 3.208 11 H -0.193 1.193 12 H -0.221 1.221 13 H -0.223 1.223 14 C -0.148 4.148 15 C -0.164 4.164 16 C -0.222 4.222 17 C -0.190 4.190 18 H 0.060 0.940 19 H 0.095 0.905 20 H 0.069 0.931 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.000 1.000 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.469 2.829 -8.978 10.420 hybrid contribution 0.769 0.157 1.139 1.383 sum -3.700 2.986 -7.839 9.168 Atomic orbital electron populations 1.22077 0.95690 1.01478 1.01183 1.20073 0.93264 0.93629 0.83824 0.93171 1.44261 1.48692 1.15489 1.24695 1.20853 0.95557 0.86034 0.94199 1.19657 1.17197 0.94470 1.06597 0.90994 1.25478 1.01829 0.96146 1.02186 1.70325 1.50407 1.05835 1.32347 0.85253 0.77161 0.78480 0.79932 1.19333 1.22138 1.22276 1.22204 1.03693 0.95516 0.93405 1.21405 1.01174 0.92892 1.00940 1.22963 0.92331 1.02056 1.04808 1.23036 0.97487 1.02717 0.95718 0.94040 0.90503 0.93127 0.94499 0.94811 0.99951 0.94707 0.92309 0.92741 0.93519 0.90106 0.89440 0.87725 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 8.96 71.98 0.64 -4.30 16 2 C 0.20 8.06 2.81 44.99 0.13 8.19 16 3 H 0.05 2.09 7.60 -2.39 -0.02 2.07 16 4 N -0.61 -30.92 2.69 -702.78 -1.89 -32.81 16 5 C 0.18 9.03 6.55 127.77 0.84 9.87 16 6 C -0.25 -14.03 9.75 84.03 0.82 -13.21 16 7 H 0.07 3.95 7.73 -2.91 -0.02 3.93 16 8 C -0.06 -3.62 5.23 84.86 0.44 -3.18 16 9 N -0.94 -56.94 10.10 21.65 0.22 -56.72 16 10 Si 0.96 46.59 29.59 68.60 2.03 48.62 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 13 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 14 C -0.15 -5.17 1.91 -52.18 -0.10 -5.27 16 15 C -0.11 -3.87 8.01 71.99 0.58 -3.29 16 16 C -0.18 -6.02 9.88 30.60 0.30 -5.71 16 17 C -0.15 -4.10 9.55 30.60 0.29 -3.81 16 18 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 19 H 0.08 2.09 7.70 -2.38 -0.02 2.07 16 20 H 0.05 1.71 6.36 -2.39 -0.02 1.69 16 21 H 0.04 1.60 4.48 -2.39 -0.01 1.59 16 22 H 0.03 1.91 5.41 -2.39 -0.01 1.89 16 23 H -0.02 -1.02 7.72 -2.39 -0.02 -1.04 16 24 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.06 1.96 6.88 -2.39 -0.02 1.95 16 26 H 0.05 1.70 8.11 -2.39 -0.02 1.68 16 27 H 0.05 2.07 5.35 -2.39 -0.01 2.05 16 28 H 0.08 2.71 8.09 -2.39 -0.02 2.70 16 29 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 30 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.10 2.46 7.98 -2.39 -0.02 2.44 16 Total: -1.00 -62.65 242.48 5.39 -57.26 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.09 Total: 4.37 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 3.94 Total: -20.72 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -1.67 Total: -89.53 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -62.65 5.39 -57.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307367087.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.753 kcal (2) G-P(sol) polarization free energy of solvation -62.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds