Wall clock time and date at job start Sun Mar 29 2020 21:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86797 * 120.00030 * 2 1 4 4 H 1.48495 * 109.47500 * 269.99980 * 3 2 1 5 5 H 1.48500 * 109.47179 * 30.00358 * 3 2 1 6 6 H 1.48508 * 109.46974 * 149.99848 * 3 2 1 7 7 C 1.38826 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00440 * 180.02562 * 7 2 1 9 9 O 1.34841 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.34804 * 116.99877 * 180.02562 * 9 7 2 11 11 O 1.21575 * 120.00497 * 0.02562 * 10 9 7 12 12 C 1.46880 * 120.00182 * 179.97438 * 10 9 7 13 13 C 1.32776 * 124.63830 * 180.02562 * 12 10 9 14 14 C 1.51110 * 110.72802 * 180.19780 * 13 12 10 15 15 C 1.54722 * 104.77548 * 343.04336 * 14 13 12 16 16 C 1.51115 * 124.62883 * 359.97438 * 12 10 9 17 17 H 0.97001 * 119.99809 * 0.02562 * 1 2 3 18 18 H 1.08002 * 124.63104 * 359.92628 * 13 12 10 19 19 H 1.09005 * 110.36704 * 102.00646 * 14 13 12 20 20 H 1.08999 * 110.36073 * 224.31500 * 14 13 12 21 21 H 1.08999 * 111.17944 * 267.20962 * 15 14 13 22 22 H 1.09004 * 110.84807 * 143.37561 * 15 14 13 23 23 H 1.08992 * 110.36582 * 315.48835 * 16 12 10 24 24 H 1.09007 * 110.36234 * 77.69307 * 16 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0082 -1.2023 -0.0005 8 1 3.0882 -1.2024 -0.0001 9 8 1.3340 -2.3700 -0.0005 10 6 2.0682 -3.5006 -0.0005 11 8 3.2823 -3.4370 -0.0001 12 6 1.4014 -4.8093 0.0000 13 6 2.0322 -5.9777 0.0006 14 6 1.0427 -7.1197 -0.0038 15 6 -0.2986 -6.4814 0.4292 16 6 -0.0964 -5.0100 0.0012 17 1 -0.4850 0.8401 -0.0004 18 1 3.1058 -6.0956 -0.0005 19 1 0.9580 -7.5444 -1.0041 20 1 1.3448 -7.8860 0.7101 21 1 -0.4413 -6.5580 1.5070 22 1 -1.1338 -6.9325 -0.1066 23 1 -0.5685 -4.3382 0.7179 24 1 -0.5020 -4.8445 -0.9970 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307620680.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:12 Heat of formation + Delta-G solvation = -72.894998 kcal Electronic energy + Delta-G solvation = -10583.353208 eV Core-core repulsion = 8462.140189 eV Total energy + Delta-G solvation = -2121.213019 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.073 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.14739 -37.51441 -35.00075 -32.14312 -29.08976 -28.05316 -25.35410 -21.93432 -20.56814 -17.97876 -17.64721 -16.54044 -15.33126 -15.03978 -14.34859 -14.20533 -13.12615 -12.45052 -12.21747 -11.62487 -11.57488 -11.26026 -11.20357 -10.96032 -10.80700 -10.43686 -10.40176 -9.79123 -9.02722 -8.58535 -8.45928 -6.42412 -4.05857 1.93623 3.16918 3.19330 3.25935 3.97404 4.09793 4.59476 4.88843 5.16599 5.17269 5.25001 5.63428 5.79409 5.97011 6.01289 6.15675 6.30091 6.47170 6.61889 6.98468 7.15650 7.41122 7.95589 8.73970 9.06416 9.88926 10.75560 Molecular weight = 182.07amu Principal moments of inertia in cm(-1) A = 0.083057 B = 0.010365 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.036760 B = 2700.752578 C = 3005.754791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.378 4.378 8 H 0.096 0.904 9 O -0.205 6.205 10 C 0.438 3.562 11 O -0.558 6.558 12 C -0.128 4.128 13 C -0.119 4.119 14 C -0.098 4.098 15 C -0.125 4.125 16 C -0.087 4.087 17 H 0.270 0.730 18 H 0.133 0.867 19 H 0.078 0.922 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 -8.767 0.150 8.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.163 4.163 3 Si 0.769 3.231 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.454 4.454 8 H 0.114 0.886 9 O -0.112 6.112 10 C 0.287 3.713 11 O -0.457 6.457 12 C -0.130 4.130 13 C -0.138 4.138 14 C -0.135 4.135 15 C -0.162 4.162 16 C -0.125 4.125 17 H 0.080 0.920 18 H 0.151 0.849 19 H 0.097 0.903 20 H 0.091 0.909 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.100 0.900 24 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.269 -8.563 0.157 8.658 hybrid contribution 0.480 0.863 -0.039 0.988 sum -0.789 -7.700 0.118 7.741 Atomic orbital electron populations 1.69982 1.06059 1.27772 1.45914 1.25373 0.95830 0.98921 0.96219 0.85656 0.79073 0.79607 0.78771 1.19828 1.20271 1.19045 1.21298 0.92508 0.79993 1.51592 0.88623 1.83947 1.39081 1.13266 1.74890 1.20543 0.85712 0.85449 0.79569 1.90637 1.15229 1.88043 1.51823 1.21240 0.96409 0.91417 1.03896 1.23826 0.99559 0.93191 0.97201 1.21383 0.93820 0.96659 1.01591 1.22482 0.96901 0.95574 1.01248 1.21193 0.92461 0.96151 1.02645 0.92001 0.84939 0.90336 0.90945 0.91090 0.90964 0.90037 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.48 13.67 55.49 0.76 -24.72 14 2 C 0.04 1.18 5.50 -17.52 -0.10 1.08 14 3 Si 0.94 21.57 29.55 -169.99 -5.02 16.55 14 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 14 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 14 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 14 7 C -0.38 -11.52 9.65 30.95 0.30 -11.22 14 8 H 0.10 2.93 6.86 -52.48 -0.36 2.57 14 9 O -0.21 -6.14 9.56 -21.80 -0.21 -6.35 14 10 C 0.44 11.75 7.87 34.23 0.27 12.02 14 11 O -0.56 -16.09 16.02 -19.32 -0.31 -16.40 14 12 C -0.13 -2.68 6.09 -102.80 -0.63 -3.31 14 13 C -0.12 -2.05 10.44 -35.98 -0.38 -2.42 14 14 C -0.10 -1.25 6.81 -26.78 -0.18 -1.43 14 15 C -0.12 -1.63 7.17 -25.00 -0.18 -1.81 14 16 C -0.09 -1.53 6.56 -26.86 -0.18 -1.71 14 17 H 0.27 7.29 8.31 -40.82 -0.34 6.95 14 18 H 0.13 2.25 8.03 -52.49 -0.42 1.83 14 19 H 0.08 0.89 8.14 -51.93 -0.42 0.47 14 20 H 0.07 0.78 8.14 -51.93 -0.42 0.36 14 21 H 0.07 0.88 8.14 -51.93 -0.42 0.45 14 22 H 0.07 0.79 8.14 -51.93 -0.42 0.36 14 23 H 0.08 1.53 8.14 -51.93 -0.42 1.11 14 24 H 0.08 1.34 8.14 -51.92 -0.42 0.92 14 LS Contribution 222.24 15.07 3.35 3.35 Total: -1.00 -33.28 222.24 -4.95 -38.24 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -2.45 Total: -1.86 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.07 Total: -8.80 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.76 Total: -24.72 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.52 Total: -22.75 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -33.28 -4.95 -38.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307620680.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.659 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds