Wall clock time and date at job start Sun Mar 29 2020 22:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47213 * 2 1 4 4 C 1.36935 * 119.99767 * 94.05006 * 3 2 1 5 5 H 1.08003 * 120.00295 * 213.75552 * 4 3 2 6 6 C 1.38810 * 120.00092 * 33.76037 * 4 3 2 7 7 N 1.31624 * 119.99781 * 22.37975 * 6 4 3 8 8 Si 1.86801 * 120.00504 * 202.37824 * 6 4 3 9 9 H 1.48497 * 109.47401 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47138 * 300.00456 * 8 6 4 11 11 H 1.48500 * 109.46798 * 59.99993 * 8 6 4 12 12 C 1.46501 * 120.00277 * 274.05447 * 3 2 1 13 13 C 1.52994 * 109.47045 * 269.99970 * 12 3 2 14 14 H 1.09001 * 115.55131 * 29.27222 * 13 12 3 15 15 C 1.53003 * 117.49659 * 243.60692 * 13 12 3 16 16 C 1.53001 * 60.00065 * 252.50952 * 15 13 12 17 17 H 1.08991 * 117.50076 * 252.51061 * 16 15 13 18 18 C 1.53002 * 117.49612 * 107.48683 * 16 15 13 19 19 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47203 * 299.99527 * 1 2 3 21 21 H 1.08996 * 109.47461 * 60.00027 * 1 2 3 22 22 H 1.09005 * 109.46897 * 240.00199 * 2 1 3 23 23 H 1.09004 * 109.47102 * 120.00480 * 2 1 3 24 24 H 0.97008 * 119.99995 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.46973 * 30.00123 * 12 3 2 26 26 H 1.09000 * 109.46688 * 149.99487 * 12 3 2 27 27 H 1.09000 * 117.50273 * 0.02562 * 15 13 12 28 28 H 1.08999 * 117.49554 * 145.01830 * 15 13 12 29 29 H 1.09002 * 109.47179 * 351.38104 * 18 16 15 30 30 H 1.09004 * 109.46774 * 111.38054 * 18 16 15 31 31 H 1.08991 * 109.47162 * 231.37890 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3255 1.9987 1.1830 5 1 2.1565 3.0592 1.2984 6 6 2.8542 1.2618 2.2338 7 7 3.4646 0.1203 1.9955 8 14 2.6996 1.8901 3.9862 9 1 3.3408 0.9261 4.9161 10 1 3.3710 3.2098 4.0999 11 1 1.2635 2.0337 4.3356 12 6 2.1780 2.1017 -1.2655 13 6 3.5901 1.8729 -1.8080 14 1 4.0500 0.9228 -1.5361 15 6 4.5064 3.0922 -1.9293 16 6 3.9190 2.4486 -3.1869 17 1 4.5953 1.8772 -3.8226 18 6 2.8106 3.2090 -3.9177 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8900 24 1 3.8338 -0.3949 2.7298 25 1 1.4477 1.7351 -1.9870 26 1 2.0208 3.1674 -1.0991 27 1 4.1034 4.0573 -1.6221 28 1 5.5691 2.9441 -1.7375 29 1 2.4981 4.0627 -3.3162 30 1 3.1840 3.5597 -4.8799 31 1 1.9600 2.5465 -4.0776 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307697457.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:01 Heat of formation + Delta-G solvation = 16.288624 kcal Electronic energy + Delta-G solvation = -11473.854700 eV Core-core repulsion = 9562.749251 eV Total energy + Delta-G solvation = -1911.105449 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.19342 -37.04242 -33.39316 -31.29044 -29.25585 -27.78091 -25.21920 -22.86436 -21.86772 -20.10322 -18.59973 -17.05498 -16.37642 -15.66378 -15.40704 -14.89505 -14.18975 -13.78459 -13.72058 -13.33382 -13.13577 -12.74452 -12.68718 -12.47838 -12.34734 -12.06293 -11.93936 -11.82587 -11.45595 -10.68380 -10.47574 -10.41418 -8.57425 -7.79969 -5.36466 1.46080 1.48671 1.55185 2.52924 3.00237 3.26563 3.72106 3.96514 4.14726 4.25471 4.50935 4.56967 4.72615 4.86144 4.93647 4.96533 4.99263 5.03273 5.06450 5.16699 5.23748 5.26338 5.48164 5.52843 5.57783 5.68245 5.89912 6.48738 7.19937 7.91918 8.42377 9.17476 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.041595 B = 0.013112 C = 0.011246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.994621 B = 2134.962999 C = 2489.175614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.134 3.866 3 N -0.600 5.600 4 C -0.259 4.259 5 H 0.056 0.944 6 C -0.042 4.042 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.293 1.293 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.181 3.819 13 C -0.169 4.169 14 H 0.062 0.938 15 C -0.177 4.177 16 C -0.143 4.143 17 H 0.104 0.896 18 C -0.114 4.114 19 H 0.058 0.942 20 H 0.033 0.967 21 H 0.047 0.953 22 H 0.020 0.980 23 H 0.067 0.933 24 H 0.250 0.750 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 3.475 -8.049 9.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.008 3.992 3 N -0.321 5.321 4 C -0.390 4.390 5 H 0.073 0.927 6 C -0.239 4.239 7 N -0.565 5.565 8 Si 0.784 3.216 9 H -0.219 1.219 10 H -0.202 1.202 11 H -0.205 1.205 12 C 0.055 3.945 13 C -0.190 4.190 14 H 0.081 0.919 15 C -0.215 4.215 16 C -0.162 4.162 17 H 0.123 0.877 18 C -0.171 4.171 19 H 0.077 0.923 20 H 0.052 0.948 21 H 0.066 0.934 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.157 3.373 -7.941 8.893 hybrid contribution 0.383 -0.038 1.204 1.264 sum -1.774 3.336 -6.736 7.724 Atomic orbital electron populations 1.22125 0.98167 1.00251 1.00285 1.20887 0.91925 0.86098 1.00244 1.44135 1.74223 1.12093 1.01617 1.19254 1.35029 0.93844 0.90863 0.92661 1.25740 0.97367 0.98415 1.02339 1.70127 1.38011 1.17151 1.31218 0.85519 0.77832 0.77528 0.80684 1.21935 1.20222 1.20543 1.20511 0.91867 0.95260 0.86836 1.23123 0.99447 0.96751 0.99650 0.91917 1.23004 0.98496 0.97250 1.02703 1.22475 1.01471 1.02714 0.89534 0.87747 1.21303 0.96706 0.99140 0.99982 0.92316 0.94804 0.93350 0.96113 0.91541 0.94128 0.92786 0.94011 0.89203 0.90125 0.92834 0.90528 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.02 10.24 71.98 0.74 -5.29 16 2 C 0.13 6.56 5.97 86.38 0.52 7.07 16 3 N -0.60 -30.64 2.45 -702.01 -1.72 -32.36 16 4 C -0.26 -14.52 9.49 84.03 0.80 -13.72 16 5 H 0.06 3.08 7.92 -2.91 -0.02 3.06 16 6 C -0.04 -2.38 4.93 84.86 0.42 -1.96 16 7 N -0.92 -54.80 11.32 21.65 0.25 -54.55 16 8 Si 0.96 45.39 29.61 68.60 2.03 47.42 16 9 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 C 0.18 7.74 5.05 86.38 0.44 8.17 16 13 C -0.17 -6.88 6.01 -10.79 -0.06 -6.95 16 14 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 15 C -0.18 -6.33 9.82 30.60 0.30 -6.03 16 16 C -0.14 -4.41 6.41 -10.79 -0.07 -4.48 16 17 H 0.10 2.93 8.14 -2.39 -0.02 2.92 16 18 C -0.11 -2.85 9.19 71.98 0.66 -2.19 16 19 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 20 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.02 0.97 8.10 -2.38 -0.02 0.95 16 23 H 0.07 3.72 5.31 -2.38 -0.01 3.71 16 24 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 25 H 0.05 2.09 7.70 -2.39 -0.02 2.07 16 26 H 0.04 1.76 7.77 -2.39 -0.02 1.74 16 27 H 0.09 3.12 7.94 -2.39 -0.02 3.10 16 28 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.05 1.36 7.90 -2.39 -0.02 1.34 16 30 H 0.08 1.52 8.14 -2.38 -0.02 1.51 16 31 H 0.06 1.49 7.83 -2.39 -0.02 1.47 16 Total: -1.00 -61.18 257.60 5.35 -55.83 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.07 Total: 9.03 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 3.73 Total: -25.37 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -1.48 Total: -86.92 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -61.18 5.35 -55.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307697457.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.121 kcal (2) G-P(sol) polarization free energy of solvation -61.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds