Wall clock time and date at job start Sun Mar 29 2020 22:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 115.54576 * 2 1 4 4 C 1.52993 * 109.47360 * 34.32576 * 3 2 1 5 5 N 1.46905 * 109.47039 * 180.02562 * 4 3 2 6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46943 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00162 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00023 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99532 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00003 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47043 * 89.99858 * 11 9 7 13 13 H 1.48494 * 109.47326 * 209.99769 * 11 9 7 14 14 H 1.48497 * 109.47436 * 330.00047 * 11 9 7 15 15 C 1.52997 * 117.51989 * 145.69458 * 2 1 3 16 16 C 1.52995 * 117.49981 * 214.32923 * 2 1 3 17 17 H 1.08997 * 109.46844 * 85.58938 * 1 2 3 18 18 H 1.09007 * 109.46883 * 205.58280 * 1 2 3 19 19 H 1.08995 * 109.47349 * 325.58724 * 1 2 3 20 20 H 1.09001 * 109.46514 * 274.32471 * 3 2 1 21 21 H 1.08998 * 109.46924 * 154.32951 * 3 2 1 22 22 H 1.09001 * 109.47393 * 60.00433 * 4 3 2 23 23 H 1.08998 * 109.47408 * 300.00078 * 4 3 2 24 24 H 1.00901 * 110.99869 * 56.04956 * 5 4 3 25 25 H 1.09004 * 109.47031 * 299.99620 * 6 5 4 26 26 H 1.08995 * 109.47111 * 59.99900 * 6 5 4 27 27 H 0.97001 * 119.99132 * 180.02562 * 10 9 7 28 28 H 1.08998 * 117.50029 * 214.97715 * 15 2 1 29 29 H 1.09002 * 117.49514 * 359.97438 * 15 2 1 30 30 H 1.08997 * 117.50340 * 359.97259 * 16 2 1 31 31 H 1.09003 * 117.49880 * 145.00322 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 1.3350 2.3543 0.8134 5 7 1.9683 3.6799 0.8128 6 6 1.1738 4.6432 1.5866 7 6 1.8528 5.9883 1.5629 8 1 2.7818 6.1149 1.0269 9 6 1.2885 7.0573 2.2262 10 7 0.1574 6.9030 2.8793 11 14 2.1305 8.7244 2.1973 12 1 1.6400 9.5066 1.0341 13 1 1.8218 9.4567 3.4518 14 1 3.5989 8.5355 2.0830 15 6 2.2370 -1.1208 0.7647 16 6 2.2365 -1.1207 -0.7653 17 1 -0.3633 0.0790 -1.0246 18 1 -0.3633 -0.9270 0.4438 19 1 -0.3634 0.8478 0.5807 20 1 2.2766 1.7416 -1.0248 21 1 3.1822 1.3088 0.4452 22 1 1.2483 1.9932 1.8382 23 1 0.3427 2.4260 0.3682 24 1 2.1183 4.0085 -0.1293 25 1 0.1800 4.7304 1.1474 26 1 1.0867 4.2979 2.6168 27 1 -0.2397 7.6551 3.3457 28 1 3.1721 -0.8748 1.2678 29 1 1.6120 -1.8583 1.2684 30 1 1.6114 -1.8583 -1.2685 31 1 3.1714 -0.8746 -1.2688 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591765005.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:15 Heat of formation + Delta-G solvation = 6.859034 kcal Electronic energy + Delta-G solvation = -10806.904624 eV Core-core repulsion = 8895.390277 eV Total energy + Delta-G solvation = -1911.514347 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.39392 -35.20022 -32.55048 -29.95435 -27.97016 -25.90838 -22.56699 -22.22646 -21.16411 -18.61467 -16.35295 -15.39346 -15.11140 -14.58036 -14.07457 -13.68115 -12.93747 -12.69878 -12.25446 -12.03149 -11.75096 -11.43996 -11.15299 -10.90552 -10.82181 -10.66268 -10.53118 -10.06941 -9.76582 -9.43138 -9.11684 -8.45479 -7.22385 -6.00843 -4.02708 3.33503 3.39285 3.44303 3.82292 4.44850 4.73358 4.87075 4.99809 5.19438 5.34980 5.52807 5.61974 5.65719 5.78336 5.90950 5.97756 6.00733 6.11782 6.17071 6.29760 6.33186 6.60116 6.64247 7.29945 7.46196 7.81750 8.16382 8.44601 8.66399 9.06914 9.62128 11.10402 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.097471 B = 0.006683 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.194961 B = 4188.875187 C = 4336.644138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C -0.079 4.079 4 C 0.060 3.940 5 N -0.694 5.694 6 C 0.193 3.807 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.900 3.100 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.177 4.177 16 C -0.181 4.181 17 H 0.056 0.944 18 H 0.051 0.949 19 H 0.073 0.927 20 H 0.060 0.940 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.022 0.978 24 H 0.327 0.673 25 H -0.015 1.015 26 H 0.027 0.973 27 H 0.261 0.739 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.655 -12.655 -5.667 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.121 4.121 3 C -0.117 4.117 4 C -0.069 4.069 5 N -0.324 5.324 6 C 0.067 3.933 7 C -0.553 4.553 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.538 5.538 11 Si 0.728 3.272 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.213 4.213 16 C -0.218 4.218 17 H 0.075 0.925 18 H 0.070 0.930 19 H 0.091 0.909 20 H 0.079 0.921 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.040 0.960 24 H 0.143 0.857 25 H 0.003 0.997 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.941 -12.695 -5.009 13.785 hybrid contribution -0.410 1.022 -0.507 1.212 sum 1.530 -11.673 -5.516 13.001 Atomic orbital electron populations 1.21488 0.92359 1.02295 1.01880 1.21525 0.94798 0.91341 1.04426 1.21110 0.99047 0.91374 1.00144 1.21949 0.94803 0.90836 0.99341 1.60647 1.51111 1.02231 1.18407 1.19546 0.90785 0.89749 0.93245 1.21214 1.08100 0.93717 1.32235 0.91970 1.25005 0.95036 0.99245 0.95374 1.69972 1.18478 1.31507 1.33887 0.86471 0.79889 0.83563 0.77324 1.20726 1.21236 1.19765 1.23139 1.02602 1.01517 0.94090 1.23007 1.02505 1.01810 0.94469 0.92527 0.92954 0.90868 0.92148 0.91249 0.91879 0.95990 0.85689 0.99675 0.95469 0.92935 0.88840 0.89216 0.89250 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.49 37.16 0.35 -1.17 16 2 C -0.12 -1.55 2.47 -154.51 -0.38 -1.94 16 3 C -0.08 -1.19 5.66 -26.73 -0.15 -1.34 16 4 C 0.06 1.12 4.69 -3.82 -0.02 1.10 16 5 N -0.69 -15.53 6.49 -115.06 -0.75 -16.28 16 6 C 0.19 5.26 5.44 -4.98 -0.03 5.23 16 7 C -0.51 -14.96 9.32 -34.44 -0.32 -15.29 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 11 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.18 -2.05 9.82 -26.73 -0.26 -2.32 16 16 C -0.18 -2.00 9.97 -26.73 -0.27 -2.27 16 17 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 18 H 0.05 0.57 7.90 -51.92 -0.41 0.16 16 19 H 0.07 1.00 5.59 -51.93 -0.29 0.71 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.07 1.07 7.90 -51.93 -0.41 0.66 16 22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.02 0.41 6.45 -51.93 -0.33 0.07 16 24 H 0.33 6.95 8.72 -39.29 -0.34 6.60 16 25 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 29 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 258.73 15.07 3.90 3.90 Total: -1.00 -30.19 258.73 -7.43 -37.62 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.13 Total: 0.91 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -1.17 Total: -16.50 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.01 Total: -42.91 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.19 -7.43 -37.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591765005.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.477 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds