Wall clock time and date at job start Sun Mar 29 2020 22:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 115.54576 * 2 1 4 4 C 1.52993 * 109.47360 * 34.32576 * 3 2 1 5 5 N 1.46905 * 109.47039 * 180.02562 * 4 3 2 6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46943 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00162 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00023 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99532 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00003 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47043 * 89.99858 * 11 9 7 13 13 H 1.48494 * 109.47326 * 209.99769 * 11 9 7 14 14 H 1.48497 * 109.47436 * 330.00047 * 11 9 7 15 15 C 1.52997 * 117.51989 * 145.69458 * 2 1 3 16 16 C 1.52995 * 117.49981 * 214.32923 * 2 1 3 17 17 H 1.08997 * 109.46844 * 85.58938 * 1 2 3 18 18 H 1.09007 * 109.46883 * 205.58280 * 1 2 3 19 19 H 1.08995 * 109.47349 * 325.58724 * 1 2 3 20 20 H 1.09001 * 109.46514 * 274.32471 * 3 2 1 21 21 H 1.08998 * 109.46924 * 154.32951 * 3 2 1 22 22 H 1.09001 * 109.47393 * 60.00433 * 4 3 2 23 23 H 1.08998 * 109.47408 * 300.00078 * 4 3 2 24 24 H 1.00901 * 110.99869 * 56.04956 * 5 4 3 25 25 H 1.09004 * 109.47031 * 299.99620 * 6 5 4 26 26 H 1.08995 * 109.47111 * 59.99900 * 6 5 4 27 27 H 0.97001 * 119.99132 * 180.02562 * 10 9 7 28 28 H 1.08998 * 117.50029 * 214.97715 * 15 2 1 29 29 H 1.09002 * 117.49514 * 359.97438 * 15 2 1 30 30 H 1.08997 * 117.50340 * 359.97259 * 16 2 1 31 31 H 1.09003 * 117.49880 * 145.00322 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 1.3350 2.3543 0.8134 5 7 1.9683 3.6799 0.8128 6 6 1.1738 4.6432 1.5866 7 6 1.8528 5.9883 1.5629 8 1 2.7818 6.1149 1.0269 9 6 1.2885 7.0573 2.2262 10 7 0.1574 6.9030 2.8793 11 14 2.1305 8.7244 2.1973 12 1 1.6400 9.5066 1.0341 13 1 1.8218 9.4567 3.4518 14 1 3.5989 8.5355 2.0830 15 6 2.2370 -1.1208 0.7647 16 6 2.2365 -1.1207 -0.7653 17 1 -0.3633 0.0790 -1.0246 18 1 -0.3633 -0.9270 0.4438 19 1 -0.3634 0.8478 0.5807 20 1 2.2766 1.7416 -1.0248 21 1 3.1822 1.3088 0.4452 22 1 1.2483 1.9932 1.8382 23 1 0.3427 2.4260 0.3682 24 1 2.1183 4.0085 -0.1293 25 1 0.1800 4.7304 1.1474 26 1 1.0867 4.2979 2.6168 27 1 -0.2397 7.6551 3.3457 28 1 3.1721 -0.8748 1.2678 29 1 1.6120 -1.8583 1.2684 30 1 1.6114 -1.8583 -1.2685 31 1 3.1714 -0.8746 -1.2688 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591765005.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:13 Heat of formation + Delta-G solvation = -12.604320 kcal Electronic energy + Delta-G solvation = -10807.748618 eV Core-core repulsion = 8895.390277 eV Total energy + Delta-G solvation = -1912.358341 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.46081 -36.97741 -34.64412 -31.51077 -29.15845 -27.80003 -24.21691 -23.35473 -22.90978 -19.70226 -18.52923 -16.86381 -16.63550 -16.24764 -15.43420 -15.13081 -14.49321 -14.26243 -13.78210 -13.60958 -13.15660 -12.85596 -12.69019 -12.46736 -12.37932 -12.09347 -12.07311 -11.81799 -11.37454 -10.90008 -10.66740 -10.41638 -9.11814 -8.23832 -6.35806 1.41151 1.43443 1.55428 2.39856 2.88390 3.09265 3.47936 3.88141 3.99980 4.06956 4.19406 4.32222 4.60299 4.68338 4.81760 4.91232 4.92358 5.02462 5.06133 5.18861 5.19900 5.22755 5.27759 5.31695 5.47189 5.60571 6.00435 6.43312 6.71323 6.87937 7.35495 8.88098 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.097471 B = 0.006683 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.194961 B = 4188.875187 C = 4336.644138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.141 4.141 3 C -0.068 4.068 4 C 0.063 3.937 5 N -0.694 5.694 6 C 0.207 3.793 7 C -0.539 4.539 8 H 0.065 0.935 9 C -0.001 4.001 10 N -0.935 5.935 11 Si 0.978 3.022 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.264 1.264 15 C -0.177 4.177 16 C -0.163 4.163 17 H 0.063 0.937 18 H 0.066 0.934 19 H 0.051 0.949 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.023 0.977 24 H 0.335 0.665 25 H -0.040 1.040 26 H -0.002 1.002 27 H 0.266 0.734 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 -12.970 -6.548 14.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C -0.105 4.105 4 C -0.066 4.066 5 N -0.324 5.324 6 C 0.079 3.921 7 C -0.577 4.577 8 H 0.083 0.917 9 C -0.199 4.199 10 N -0.576 5.576 11 Si 0.801 3.199 12 H -0.195 1.195 13 H -0.206 1.206 14 H -0.188 1.188 15 C -0.214 4.214 16 C -0.200 4.200 17 H 0.082 0.918 18 H 0.085 0.915 19 H 0.070 0.930 20 H 0.085 0.915 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.041 0.959 24 H 0.152 0.848 25 H -0.022 1.022 26 H 0.016 0.984 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.853 -13.035 -5.907 14.593 hybrid contribution -0.717 1.054 -0.226 1.295 sum 2.136 -11.981 -6.133 13.628 Atomic orbital electron populations 1.21456 0.92098 1.02155 1.02112 1.21465 0.95063 0.90579 1.07024 1.20968 0.98167 0.91863 0.99532 1.21998 0.95529 0.89548 0.99500 1.60535 1.50540 1.02838 1.18523 1.19208 0.90140 0.90603 0.92111 1.21569 1.08504 0.94805 1.32823 0.91651 1.26015 0.95606 1.03711 0.94529 1.70103 1.19966 1.33050 1.34436 0.85263 0.78923 0.77934 0.77750 1.19507 1.20607 1.18835 1.23226 1.02423 1.00867 0.94878 1.23085 1.02436 1.00351 0.94122 0.91802 0.91460 0.92959 0.91520 0.91612 0.93083 0.95908 0.84786 1.02191 0.98434 0.92537 0.89085 0.88062 0.87607 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 9.49 71.98 0.68 -2.16 16 2 C -0.14 -3.40 2.47 -52.18 -0.13 -3.53 16 3 C -0.07 -1.97 5.66 30.59 0.17 -1.80 16 4 C 0.06 2.37 4.69 86.30 0.40 2.78 16 5 N -0.69 -31.48 6.49 -517.93 -3.36 -34.84 16 6 C 0.21 11.62 5.44 85.56 0.47 12.09 16 7 C -0.54 -31.69 9.32 25.60 0.24 -31.46 16 8 H 0.07 3.72 7.81 -2.91 -0.02 3.69 16 9 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 10 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 11 Si 0.98 44.88 29.54 68.60 2.03 46.90 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 15 C -0.18 -3.75 9.82 30.60 0.30 -3.44 16 16 C -0.16 -3.15 9.97 30.59 0.31 -2.84 16 17 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 18 H 0.07 1.35 7.90 -2.38 -0.02 1.33 16 19 H 0.05 1.42 5.59 -2.39 -0.01 1.41 16 20 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.07 1.96 7.90 -2.39 -0.02 1.94 16 22 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.02 0.86 6.45 -2.39 -0.02 0.84 16 24 H 0.34 14.25 8.72 -89.69 -0.78 13.46 16 25 H -0.04 -2.37 8.14 -2.39 -0.02 -2.39 16 26 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.09 1.97 8.05 -2.39 -0.02 1.95 16 29 H 0.10 1.90 8.05 -2.39 -0.02 1.88 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -64.25 258.73 2.16 -62.09 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.30 Total: 13.18 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 2.90 Total: -29.94 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -3.08 Total: -92.24 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.25 2.16 -62.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591765005.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.488 kcal (2) G-P(sol) polarization free energy of solvation -64.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds