Wall clock time and date at job start Sun Mar 29 2020 22:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 120.00076 * 2 1 4 4 H 1.07996 * 119.99765 * 162.14320 * 3 2 1 5 5 C 1.38809 * 120.00152 * 341.86281 * 3 2 1 6 6 N 1.31623 * 119.99732 * 344.76405 * 5 3 2 7 7 Si 1.86803 * 120.00229 * 164.75849 * 5 3 2 8 8 H 1.48497 * 109.46727 * 60.00192 * 7 5 3 9 9 H 1.48498 * 109.47060 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47162 * 300.00362 * 7 5 3 11 11 C 1.46502 * 119.99810 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.47049 * 269.99446 * 11 2 1 13 13 H 1.08997 * 115.54973 * 330.59069 * 12 11 2 14 14 C 1.52999 * 117.49288 * 116.25286 * 12 11 2 15 15 C 1.53002 * 117.49668 * 184.91090 * 12 11 2 16 16 C 1.52997 * 117.50022 * 0.02562 * 15 12 11 17 17 C 1.53003 * 117.49392 * 145.02181 * 15 12 11 18 18 H 1.08993 * 109.47242 * 85.14430 * 1 2 3 19 19 H 1.08998 * 109.46892 * 205.15037 * 1 2 3 20 20 H 1.09007 * 109.46803 * 325.14788 * 1 2 3 21 21 H 0.97002 * 119.99572 * 179.97438 * 6 5 3 22 22 H 1.08993 * 109.46971 * 29.99970 * 11 2 1 23 23 H 1.09003 * 109.46705 * 149.99794 * 11 2 1 24 24 H 1.09000 * 117.49614 * 214.97901 * 14 12 11 25 25 H 1.09002 * 117.50070 * 359.97438 * 14 12 11 26 26 H 1.09005 * 109.47205 * 59.99497 * 16 15 12 27 27 H 1.08999 * 109.47453 * 179.97438 * 16 15 12 28 28 H 1.09000 * 109.47063 * 299.99833 * 16 15 12 29 29 H 1.09004 * 109.46924 * 60.00688 * 17 15 12 30 30 H 1.08998 * 109.46798 * 179.97438 * 17 15 12 31 31 H 1.08997 * 109.47133 * 300.00212 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1907 1.2084 0.2868 5 6 1.5074 2.3582 -0.3742 6 7 0.3549 2.3038 -1.0075 7 14 2.2788 4.0130 0.0211 8 1 3.6086 4.1080 -0.6329 9 1 1.4010 5.1007 -0.4805 10 1 2.4396 4.1456 1.4914 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7110 1.4418 13 1 2.5454 -0.9061 2.1708 14 6 1.7992 -3.0139 1.9071 15 6 3.3083 -2.9610 1.6565 16 6 3.8440 -3.6727 0.4125 17 6 4.2286 -2.9856 2.8785 18 1 -0.3633 0.0870 -1.0239 19 1 -0.3633 -0.9302 0.4368 20 1 -0.3633 0.8434 0.5873 21 1 -0.0941 3.1230 -1.2686 22 1 1.6084 -2.0281 -0.5147 23 1 3.1499 -1.1382 -0.5144 24 1 1.4626 -3.0662 2.9425 25 1 1.1872 -3.5556 1.1859 26 1 4.4727 -2.9873 -0.1558 27 1 4.4323 -4.5392 0.7146 28 1 3.0088 -3.9985 -0.2075 29 1 3.6316 -2.8862 3.7851 30 1 4.7731 -3.9295 2.9043 31 1 4.9364 -2.1590 2.8170 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595911007.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:30 Heat of formation + Delta-G solvation = 18.710960 kcal Electronic energy + Delta-G solvation = -11345.554997 eV Core-core repulsion = 9434.554589 eV Total energy + Delta-G solvation = -1911.000409 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.63481 -36.96847 -33.23019 -30.29915 -28.61290 -28.03455 -27.32375 -23.49446 -21.70526 -19.44551 -18.65229 -16.99926 -16.02165 -15.54152 -15.40693 -14.69141 -14.45701 -14.15385 -13.46920 -13.27083 -13.09734 -12.76555 -12.75062 -12.59898 -12.32282 -12.22850 -12.03437 -11.92460 -11.83784 -10.74257 -10.47978 -10.29574 -8.80860 -7.82474 -5.26524 1.45093 1.48350 1.55039 2.50923 2.91487 3.29476 3.65461 3.94877 4.03579 4.13005 4.30324 4.63224 4.78721 4.83183 4.85132 4.94420 5.00287 5.07272 5.10451 5.15118 5.17788 5.33781 5.36318 5.48584 5.58493 5.60288 5.69989 6.31984 7.15453 7.89621 8.32044 9.21526 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.054377 B = 0.010602 C = 0.009692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.799698 B = 2640.493275 C = 2888.321580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.622 5.622 3 C -0.261 4.261 4 H 0.070 0.930 5 C -0.059 4.059 6 N -0.942 5.942 7 Si 0.970 3.030 8 H -0.274 1.274 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.185 3.815 12 C -0.170 4.170 13 H 0.075 0.925 14 C -0.167 4.167 15 C -0.124 4.124 16 C -0.111 4.111 17 C -0.110 4.110 18 H 0.001 0.999 19 H 0.027 0.973 20 H 0.017 0.983 21 H 0.248 0.752 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 -10.528 5.381 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.345 5.345 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.254 4.254 6 N -0.590 5.590 7 Si 0.798 3.202 8 H -0.200 1.200 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.059 3.941 12 C -0.191 4.191 13 H 0.093 0.907 14 C -0.204 4.204 15 C -0.125 4.125 16 C -0.168 4.168 17 C -0.167 4.167 18 H 0.019 0.981 19 H 0.045 0.955 20 H 0.036 0.964 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.370 -10.405 5.305 12.855 hybrid contribution -0.056 1.262 0.042 1.264 sum 5.315 -9.143 5.347 11.851 Atomic orbital electron populations 1.20492 0.82766 0.95779 0.97321 1.44197 1.02216 1.01823 1.86257 1.19512 0.95810 0.86080 1.37655 0.91253 1.25727 0.98519 1.01609 0.99514 1.70273 1.19003 1.26889 1.42803 0.85295 0.77616 0.79338 0.77963 1.19995 1.21898 1.20648 1.20359 0.94788 0.86334 0.92589 1.23164 1.05577 0.90962 0.99399 0.90699 1.23286 0.94940 1.00237 1.01920 1.21756 0.92174 1.00036 0.98546 1.21316 1.00871 0.99677 0.94956 1.21336 0.98292 1.02333 0.94761 0.98061 0.95501 0.96374 0.94301 0.93615 0.94012 0.88837 0.88853 0.92898 0.90437 0.92592 0.92622 0.90411 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.53 8.97 127.77 1.15 10.68 16 2 N -0.62 -33.03 2.93 -726.94 -2.13 -35.16 16 3 C -0.26 -14.97 9.69 84.03 0.81 -14.16 16 4 H 0.07 3.88 7.88 -2.91 -0.02 3.85 16 5 C -0.06 -3.46 5.07 84.86 0.43 -3.03 16 6 N -0.94 -57.74 10.56 21.65 0.23 -57.51 16 7 Si 0.97 46.48 29.58 68.60 2.03 48.51 16 8 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 9 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 C 0.19 7.92 5.01 86.38 0.43 8.35 16 12 C -0.17 -6.24 5.73 -10.79 -0.06 -6.30 16 13 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 14 C -0.17 -4.92 9.47 30.62 0.29 -4.63 16 15 C -0.12 -3.48 2.70 -52.16 -0.14 -3.62 16 16 C -0.11 -2.72 8.86 71.98 0.64 -2.08 16 17 C -0.11 -2.60 9.85 71.98 0.71 -1.89 16 18 H 0.00 0.06 7.47 -2.39 -0.02 0.05 16 19 H 0.03 1.21 8.04 -2.39 -0.02 1.19 16 20 H 0.02 1.01 7.05 -2.38 -0.02 0.99 16 21 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 22 H 0.05 1.83 7.81 -2.39 -0.02 1.81 16 23 H 0.04 1.81 7.67 -2.39 -0.02 1.79 16 24 H 0.09 2.54 8.05 -2.39 -0.02 2.52 16 25 H 0.09 2.63 7.94 -2.39 -0.02 2.61 16 26 H 0.05 1.37 7.84 -2.38 -0.02 1.35 16 27 H 0.08 1.51 7.92 -2.39 -0.02 1.49 16 28 H 0.06 1.36 7.90 -2.39 -0.02 1.34 16 29 H 0.05 1.27 7.90 -2.38 -0.02 1.25 16 30 H 0.08 1.46 7.92 -2.39 -0.02 1.45 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -63.86 255.72 5.45 -58.41 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: 1.07 Total: 2.45 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 4.26 Total: -16.69 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -1.90 Total: -92.67 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -63.86 5.45 -58.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595911007.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.121 kcal (2) G-P(sol) polarization free energy of solvation -63.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds