Wall clock time and date at job start Sun Mar 29 2020 22:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20764 * 119.99907 * 2 1 4 4 C 1.50700 * 119.99907 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.47268 * 180.02562 * 4 2 1 6 6 C 1.36946 * 119.99505 * 270.00209 * 5 4 2 7 7 H 1.07998 * 119.99668 * 192.58286 * 6 5 4 8 8 C 1.38807 * 120.00016 * 12.58088 * 6 5 4 9 9 N 1.31626 * 120.00286 * 25.40216 * 8 6 5 10 10 Si 1.86799 * 119.99874 * 205.39280 * 8 6 5 11 11 H 1.48507 * 109.46974 * 60.00511 * 10 8 6 12 12 H 1.48502 * 109.47232 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47457 * 300.00475 * 10 8 6 14 14 C 1.46496 * 120.00223 * 89.99797 * 5 4 2 15 15 C 1.53006 * 117.49766 * 194.08107 * 14 5 4 16 16 C 1.52998 * 117.49675 * 125.45922 * 14 5 4 17 17 H 1.09001 * 109.47290 * 270.00776 * 1 2 3 18 18 H 1.09006 * 109.46837 * 30.00214 * 1 2 3 19 19 H 1.08993 * 109.47090 * 150.00143 * 1 2 3 20 20 H 1.09001 * 109.46729 * 59.99734 * 4 2 1 21 21 H 1.09007 * 109.47096 * 299.99975 * 4 2 1 22 22 H 0.96989 * 119.99895 * 175.04561 * 9 8 6 23 23 H 1.08996 * 115.55037 * 339.78765 * 14 5 4 24 24 H 1.08998 * 117.49598 * 0.02562 * 15 14 5 25 25 H 1.08998 * 117.49828 * 145.02191 * 15 14 5 26 26 H 1.09001 * 117.49494 * 214.97701 * 16 14 5 27 27 H 1.09000 * 117.50063 * 359.97438 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 7 3.7009 -1.0375 0.0011 6 6 4.3744 -0.9126 -1.1847 7 1 5.4543 -0.9192 -1.1956 8 6 3.6692 -0.7777 -2.3726 9 7 2.4514 -0.2782 -2.3620 10 14 4.4484 -1.3046 -3.9865 11 1 4.7785 -2.7514 -3.9276 12 1 3.4966 -1.0585 -5.0994 13 1 5.6898 -0.5227 -4.2154 14 6 4.4206 -0.9033 1.2700 15 6 5.8284 -0.3059 1.2239 16 6 5.6401 -1.8010 1.4888 17 1 -0.3634 0.0001 1.0277 18 1 -0.3633 0.8900 -0.5139 19 1 -0.3633 -0.8899 -0.5138 20 1 1.9971 -1.8771 -0.8891 21 1 1.9972 -1.8763 0.8909 22 1 1.9861 -0.1169 -3.1976 23 1 3.8036 -0.6721 2.1382 24 1 6.2189 -0.0123 0.2495 25 1 6.1378 0.3186 2.0620 26 1 5.8255 -2.1600 2.5011 27 1 5.9066 -2.4917 0.6888 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000639469390.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:31 Heat of formation + Delta-G solvation = -0.460796 kcal Electronic energy + Delta-G solvation = -11496.008320 eV Core-core repulsion = 9448.343467 eV Total energy + Delta-G solvation = -2047.664853 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.83430 -38.25416 -35.21689 -32.49139 -31.01819 -27.86316 -25.48375 -22.99813 -21.72539 -20.31354 -18.32133 -17.50429 -16.20539 -16.13939 -15.77354 -15.31974 -15.05149 -14.08474 -13.60010 -13.26601 -12.91519 -12.70388 -12.67865 -12.36302 -12.21344 -12.09281 -11.83472 -11.70195 -11.01588 -10.42736 -10.01521 -8.61635 -7.92540 -5.17166 1.44749 1.46939 1.54142 1.94104 2.49733 3.10526 3.38523 3.46930 3.97802 4.25370 4.43903 4.50022 4.58886 4.73645 4.87671 4.91387 4.98622 5.11278 5.24564 5.32802 5.49571 5.58399 5.69065 6.28044 7.10448 7.49674 7.89252 8.25313 9.16097 Molecular weight = 183.10amu Principal moments of inertia in cm(-1) A = 0.027297 B = 0.023448 C = 0.014108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.516217 B = 1193.844417 C = 1984.275346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.361 3.639 3 O -0.511 6.511 4 C 0.129 3.871 5 N -0.569 5.569 6 C -0.257 4.257 7 H 0.071 0.929 8 C -0.051 4.051 9 N -0.924 5.924 10 Si 0.967 3.033 11 H -0.277 1.277 12 H -0.293 1.293 13 H -0.287 1.287 14 C 0.103 3.897 15 C -0.206 4.206 16 C -0.194 4.194 17 H 0.106 0.894 18 H 0.057 0.943 19 H 0.087 0.913 20 H 0.080 0.920 21 H 0.082 0.918 22 H 0.250 0.750 23 H 0.106 0.894 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 -4.177 6.031 7.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.237 3.763 3 O -0.387 6.387 4 C 0.003 3.997 5 N -0.285 5.285 6 C -0.386 4.386 7 H 0.089 0.911 8 C -0.245 4.245 9 N -0.571 5.571 10 Si 0.796 3.204 11 H -0.203 1.203 12 H -0.219 1.219 13 H -0.214 1.214 14 C -0.006 4.006 15 C -0.245 4.245 16 C -0.235 4.235 17 H 0.124 0.876 18 H 0.076 0.924 19 H 0.106 0.894 20 H 0.098 0.902 21 H 0.099 0.901 22 H 0.060 0.940 23 H 0.124 0.876 24 H 0.086 0.914 25 H 0.120 0.880 26 H 0.131 0.869 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.548 -3.674 5.867 7.093 hybrid contribution 0.365 0.158 -1.314 1.373 sum -1.183 -3.516 4.553 5.873 Atomic orbital electron populations 1.22160 0.94582 1.03613 1.04037 1.25481 0.91705 0.91758 0.67352 1.90199 1.73143 1.36595 1.38777 1.21226 0.82671 0.94956 1.00855 1.43739 1.04169 1.79834 1.00778 1.19341 0.91330 1.43532 0.84430 0.91112 1.25407 0.97657 1.00907 1.00562 1.69844 1.14905 1.46556 1.25751 0.85333 0.77079 0.78556 0.79445 1.20345 1.21941 1.21374 1.21236 0.87633 1.02373 0.89330 1.23127 1.02709 0.96942 1.01743 1.23369 1.05846 0.92247 1.02023 0.87602 0.92354 0.89392 0.90182 0.90052 0.94031 0.87606 0.91404 0.87998 0.86924 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.40 10.25 71.24 0.73 -5.67 15 2 C 0.36 16.76 5.23 29.10 0.15 16.91 15 3 O -0.51 -28.89 16.59 -1.46 -0.02 -28.91 15 4 C 0.13 5.87 5.40 85.63 0.46 6.33 15 5 N -0.57 -28.56 2.38 -682.33 -1.62 -30.18 15 6 C -0.26 -14.24 8.90 84.03 0.75 -13.50 15 7 H 0.07 3.94 6.27 -2.91 -0.02 3.92 15 8 C -0.05 -2.82 4.83 84.86 0.41 -2.41 15 9 N -0.92 -52.91 8.86 21.65 0.19 -52.71 15 10 Si 0.97 45.59 29.63 68.60 2.03 47.62 15 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 12 H -0.29 -13.81 7.11 99.48 0.71 -13.10 15 13 H -0.29 -13.54 7.11 99.48 0.71 -12.83 15 14 C 0.10 4.36 6.60 44.99 0.30 4.66 15 15 C -0.21 -8.22 9.77 30.60 0.30 -7.92 15 16 C -0.19 -7.00 10.13 30.60 0.31 -6.69 15 17 H 0.11 2.84 8.14 -2.39 -0.02 2.82 15 18 H 0.06 2.10 8.14 -2.38 -0.02 2.08 15 19 H 0.09 2.70 8.12 -2.39 -0.02 2.68 15 20 H 0.08 3.92 6.61 -2.39 -0.02 3.90 15 21 H 0.08 3.00 8.07 -2.38 -0.02 2.98 15 22 H 0.25 14.11 8.32 -92.72 -0.77 13.34 15 23 H 0.11 4.05 8.14 -2.39 -0.02 4.03 15 24 H 0.07 3.09 6.44 -2.39 -0.02 3.07 15 25 H 0.10 3.46 8.14 -2.39 -0.02 3.44 15 26 H 0.11 3.22 8.14 -2.39 -0.02 3.20 15 27 H 0.07 2.88 8.14 -2.39 -0.02 2.86 15 Total: -1.00 -67.10 232.57 5.13 -61.97 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.14 Total: 10.49 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 3.41 Total: -8.28 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -1.43 Total: -82.90 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.02 Total: -28.91 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -67.10 5.13 -61.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639469390.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.510 kcal (2) G-P(sol) polarization free energy of solvation -67.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds