Wall clock time and date at job start Sun Mar 29 2020 22:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46878 * 2 1 4 4 C 1.53007 * 109.46582 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.46668 * 180.02562 * 4 3 2 6 6 C 1.47959 * 110.99462 * 190.00235 * 5 4 3 7 7 C 1.53940 * 86.17699 * 222.41626 * 6 5 4 8 8 C 1.50706 * 113.72960 * 138.08084 * 7 6 5 9 9 H 1.07995 * 120.00167 * 1.62264 * 8 7 6 10 10 C 1.37879 * 119.99394 * 181.89962 * 8 7 6 11 11 N 1.31514 * 120.00338 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99424 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47474 * 90.00322 * 12 10 8 14 14 H 1.48507 * 109.46754 * 210.00056 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99887 * 12 10 8 16 16 C 1.48181 * 111.07114 * 90.56996 * 5 4 3 17 17 H 1.09000 * 109.47348 * 59.99289 * 1 2 3 18 18 H 1.08997 * 109.47419 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46422 * 299.99510 * 1 2 3 20 20 H 1.09001 * 109.46422 * 240.00489 * 2 1 3 21 21 H 1.09000 * 109.47348 * 120.00711 * 2 1 3 22 22 H 1.09001 * 109.47194 * 60.00962 * 3 2 1 23 23 H 1.09000 * 109.47369 * 300.00067 * 3 2 1 24 24 H 1.09001 * 109.46737 * 60.00478 * 4 3 2 25 25 H 1.09000 * 109.47157 * 299.99993 * 4 3 2 26 26 H 1.08999 * 113.75755 * 108.10617 * 6 5 4 27 27 H 1.08993 * 113.76352 * 336.73314 * 6 5 4 28 28 H 1.09004 * 113.73426 * 269.25544 * 7 6 5 29 29 H 0.96996 * 119.99730 * 179.97438 * 11 10 8 30 30 H 1.09002 * 113.76007 * 23.23287 * 16 5 4 31 31 H 1.09000 * 113.82508 * 251.80992 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 5.5189 2.8740 -0.2405 7 6 5.5634 3.9417 0.8676 8 6 6.7226 3.7821 1.8173 9 1 7.4394 2.9886 1.6659 10 6 6.8648 4.6456 2.8827 11 7 5.9886 5.6082 3.0704 12 14 8.3021 4.4483 4.0594 13 1 9.4528 5.2521 3.5746 14 1 7.9038 4.9188 5.4105 15 1 8.6922 3.0171 4.1287 16 6 4.2508 3.3244 1.3828 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3632 0.5138 0.8901 20 1 1.8932 -0.5138 -0.8901 21 1 1.8934 -0.5139 0.8899 22 1 1.6768 1.9563 0.8901 23 1 1.6766 1.9564 -0.8900 24 1 3.9329 0.9288 -0.8909 25 1 3.9337 0.9285 0.8891 26 1 5.7896 3.2526 -1.2262 27 1 6.0363 1.9504 0.0185 28 1 5.4536 4.9615 0.4988 29 1 6.0885 6.2155 3.8201 30 1 4.3966 2.5327 2.1178 31 1 3.5102 4.0620 1.6920 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906534830.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:20 Heat of formation + Delta-G solvation = -9.349783 kcal Electronic energy + Delta-G solvation = -11055.665234 eV Core-core repulsion = 9143.448021 eV Total energy + Delta-G solvation = -1912.217214 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.45274 -36.26510 -34.60018 -31.59156 -28.57661 -26.75286 -25.92535 -22.95248 -21.80512 -20.41710 -18.61217 -16.79105 -16.56055 -16.18955 -15.72827 -15.16291 -14.46727 -13.99578 -13.78568 -13.36497 -13.08817 -12.95585 -12.82766 -12.43778 -12.28080 -11.93618 -11.82297 -11.44480 -11.39284 -11.06616 -10.86706 -10.51924 -9.58766 -8.15878 -6.27954 1.42231 1.42420 1.53140 2.41746 3.13517 3.22672 3.92811 4.10847 4.20764 4.35239 4.38253 4.48946 4.61006 4.71725 4.81393 4.84656 4.91343 4.92856 5.03218 5.16091 5.21428 5.28008 5.36402 5.49520 5.61096 5.61872 5.84129 6.28547 6.41049 6.80911 7.40651 8.93786 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.071114 B = 0.008033 C = 0.007875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.638114 B = 3484.985709 C = 3554.840032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.104 4.104 4 C 0.020 3.980 5 N -0.494 5.494 6 C 0.011 3.989 7 C 0.018 3.982 8 C -0.535 4.535 9 H 0.059 0.941 10 C 0.014 3.986 11 N -0.922 5.922 12 Si 0.960 3.040 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.266 1.266 16 C 0.025 3.975 17 H 0.056 0.944 18 H 0.066 0.934 19 H 0.049 0.951 20 H 0.070 0.930 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.031 0.969 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.025 0.975 29 H 0.263 0.737 30 H 0.047 0.953 31 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.024 -9.580 -4.270 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.142 4.142 4 C -0.108 4.108 5 N -0.217 5.217 6 C -0.117 4.117 7 C -0.001 4.001 8 C -0.573 4.573 9 H 0.077 0.923 10 C -0.186 4.186 11 N -0.561 5.561 12 Si 0.785 3.215 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.190 1.190 16 C -0.104 4.104 17 H 0.075 0.925 18 H 0.085 0.915 19 H 0.068 0.932 20 H 0.088 0.912 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.049 0.951 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.533 -9.119 -4.610 12.128 hybrid contribution 1.133 -0.169 1.321 1.748 sum -5.401 -9.288 -3.288 11.236 Atomic orbital electron populations 1.21747 0.94846 1.02199 1.01824 1.21485 0.96699 0.95335 1.02214 1.21444 0.93555 0.97572 1.01611 1.22707 0.97067 0.90460 1.00611 1.68404 1.14902 1.19349 1.19015 1.23917 0.88765 0.99199 0.99838 1.20317 0.93124 0.93765 0.92889 1.21442 1.10632 1.14451 1.10764 0.92325 1.25851 0.98718 0.94531 0.99471 1.70097 1.37116 1.18116 1.30781 0.85537 0.79361 0.78705 0.77947 1.19862 1.20898 1.19020 1.23837 0.99077 0.98001 0.89501 0.92457 0.91480 0.93213 0.91152 0.92315 0.93676 0.91738 0.90481 0.95054 0.90258 0.92042 0.95717 0.92814 0.93458 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.91 71.98 0.71 -2.13 16 2 C -0.12 -2.67 5.93 30.60 0.18 -2.49 16 3 C -0.10 -3.01 5.52 30.60 0.17 -2.84 16 4 C 0.02 0.68 4.80 86.30 0.41 1.09 16 5 N -0.49 -20.60 6.16 -907.37 -5.59 -26.19 16 6 C 0.01 0.49 7.50 86.41 0.65 1.14 16 7 C 0.02 0.95 3.60 -10.89 -0.04 0.91 16 8 C -0.53 -29.82 8.77 25.60 0.22 -29.59 16 9 H 0.06 3.17 7.81 -2.91 -0.02 3.14 16 10 C 0.01 0.76 5.46 84.66 0.46 1.22 16 11 N -0.92 -54.76 13.29 21.45 0.28 -54.48 16 12 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 16 C 0.03 1.21 7.53 86.37 0.65 1.86 16 17 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 18 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 19 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 20 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.08 2.33 8.08 -2.39 -0.02 2.31 16 25 H 0.03 1.09 7.39 -2.39 -0.02 1.08 16 26 H 0.08 3.14 8.14 -2.39 -0.02 3.13 16 27 H 0.06 2.53 7.87 -2.39 -0.02 2.51 16 28 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.05 2.31 7.44 -2.39 -0.02 2.29 16 31 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -59.96 257.65 1.21 -58.76 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.06 Total: 7.17 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 3.42 Total: -30.83 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -5.30 Total: -80.66 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -59.96 1.21 -58.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906534830.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.406 kcal (2) G-P(sol) polarization free energy of solvation -59.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds