Wall clock time and date at job start Sun Mar 29 2020 21:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30274 * 126.27763 * 2 1 4 4 N 1.28674 * 109.37802 * 180.02562 * 3 2 1 5 5 C 1.30274 * 109.37972 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.28314 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47131 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46919 * 300.03940 * 6 5 4 9 9 C 1.50692 * 109.46990 * 60.03707 * 6 5 4 10 10 H 1.08000 * 120.00397 * 0.02562 * 9 6 5 11 11 C 1.37885 * 120.00037 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99861 * 0.02562 * 11 9 6 13 13 Si 1.86795 * 120.00194 * 180.02562 * 11 9 6 14 14 H 1.48501 * 109.47256 * 60.00023 * 13 11 9 15 15 H 1.48502 * 109.47243 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47004 * 300.00008 * 13 11 9 17 17 O 1.34356 * 126.28319 * 180.02562 * 2 1 3 18 18 H 1.08995 * 109.47003 * 269.95828 * 1 2 3 19 19 H 1.08997 * 109.46726 * 29.96361 * 1 2 3 20 20 H 1.09004 * 109.46588 * 149.95599 * 1 2 3 21 21 H 1.09003 * 109.46559 * 59.99566 * 8 6 5 22 22 H 1.08999 * 109.47288 * 180.02562 * 8 6 5 23 23 H 1.09003 * 109.47129 * 300.00282 * 8 6 5 24 24 H 0.96991 * 120.00364 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6762 -0.0005 5 6 3.5655 -0.6253 -0.0004 6 6 4.8177 -1.4638 -0.0014 7 1 4.5479 -2.5198 -0.0014 8 6 5.6421 -1.1476 -1.2510 9 6 5.6310 -1.1533 1.2287 10 1 5.2764 -0.4224 1.9403 11 6 6.8280 -1.8025 1.4457 12 7 7.2601 -2.6923 0.5789 13 14 7.8358 -1.4183 2.9708 14 1 7.0357 -1.7262 4.1834 15 1 9.0704 -2.2435 2.9691 16 1 8.2027 0.0206 2.9720 17 8 2.3022 -1.0830 -0.0005 18 1 -0.3633 -0.0007 1.0276 19 1 -0.3633 0.8903 -0.5133 20 1 -0.3633 -0.8897 -0.5146 21 1 5.9118 -0.0915 -1.2507 22 1 6.5476 -1.7544 -1.2520 23 1 5.0537 -1.3721 -2.1408 24 1 8.1018 -3.1492 0.7317 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330067426.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:29 Heat of formation + Delta-G solvation = -1.198207 kcal Electronic energy + Delta-G solvation = -10753.776349 eV Core-core repulsion = 8667.965087 eV Total energy + Delta-G solvation = -2085.811262 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.06838 -37.05523 -36.76018 -33.94544 -32.31203 -28.60600 -27.39143 -25.25700 -23.32580 -22.28498 -18.72368 -18.03791 -17.99947 -16.82928 -15.68851 -15.40604 -14.72531 -14.06368 -13.71109 -13.54100 -13.33758 -13.00735 -12.86915 -12.82186 -12.58178 -12.35811 -12.13783 -11.77451 -11.31909 -10.60304 -10.23694 -8.24860 -6.40054 0.34672 1.40453 1.44002 1.47421 1.51366 1.56278 2.39696 3.04936 3.16239 3.72766 4.10507 4.51820 4.56935 4.61514 4.71684 4.81477 4.87265 4.98468 5.12680 5.37042 5.62743 5.78666 6.02415 6.60814 7.27735 7.46356 8.81261 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.067308 B = 0.011422 C = 0.010715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.901193 B = 2450.927550 C = 2612.483982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.140 3.860 3 N -0.332 5.332 4 N -0.330 5.330 5 C 0.200 3.800 6 C 0.130 3.870 7 H 0.045 0.955 8 C -0.119 4.119 9 C -0.536 4.536 10 H 0.046 0.954 11 C 0.028 3.972 12 N -0.906 5.906 13 Si 0.966 3.034 14 H -0.272 1.272 15 H -0.272 1.272 16 H -0.275 1.275 17 O -0.242 6.242 18 H 0.116 0.884 19 H 0.121 0.879 20 H 0.113 0.887 21 H 0.034 0.966 22 H 0.086 0.914 23 H 0.034 0.966 24 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.696 0.829 -0.866 9.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.071 4.071 3 N -0.178 5.178 4 N -0.175 5.175 5 C -0.011 4.011 6 C 0.109 3.891 7 H 0.063 0.937 8 C -0.177 4.177 9 C -0.574 4.574 10 H 0.065 0.935 11 C -0.173 4.173 12 N -0.544 5.544 13 Si 0.790 3.210 14 H -0.197 1.197 15 H -0.196 1.196 16 H -0.200 1.200 17 O -0.123 6.123 18 H 0.134 0.866 19 H 0.139 0.861 20 H 0.131 0.869 21 H 0.053 0.947 22 H 0.104 0.896 23 H 0.053 0.947 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.176 1.958 -0.913 9.426 hybrid contribution 0.354 -0.999 0.687 1.263 sum -8.822 0.959 -0.226 8.876 Atomic orbital electron populations 1.20656 0.75923 1.07224 1.06727 1.29194 0.99713 0.79164 0.99064 1.74197 0.96495 1.27510 1.19585 1.74277 1.12220 1.10535 1.20427 1.29183 0.85235 0.91780 0.94879 1.17572 0.81863 0.92273 0.97349 0.93744 1.21635 1.01327 1.00781 0.93953 1.20957 1.06135 1.24434 1.05863 0.93520 1.25607 0.97702 0.94171 0.99801 1.69921 1.22135 1.25890 1.36411 0.85492 0.78002 0.78371 0.79130 1.19689 1.19634 1.20008 1.84810 1.17996 1.39208 1.70262 0.86615 0.86064 0.86860 0.94654 0.89564 0.94710 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.89 10.51 71.24 0.75 -0.14 14 2 C 0.14 4.97 8.48 88.34 0.75 5.72 14 3 N -0.33 -14.34 12.22 -165.50 -2.02 -16.36 14 4 N -0.33 -16.49 12.22 -165.50 -2.02 -18.52 14 5 C 0.20 9.80 6.92 88.34 0.61 10.41 14 6 C 0.13 6.74 2.77 -12.29 -0.03 6.70 14 7 H 0.04 2.37 8.14 -2.39 -0.02 2.35 14 8 C -0.12 -5.80 8.95 71.98 0.64 -5.16 14 9 C -0.54 -30.04 8.55 25.60 0.22 -29.82 14 10 H 0.05 2.71 7.74 -2.91 -0.02 2.69 14 11 C 0.03 1.52 5.30 84.66 0.45 1.97 14 12 N -0.91 -49.54 11.32 21.45 0.24 -49.30 14 13 Si 0.97 43.05 29.54 68.60 2.03 45.08 14 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 14 15 H -0.27 -11.47 7.11 99.48 0.71 -10.76 14 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 14 17 O -0.24 -10.24 10.87 -3.59 -0.04 -10.28 14 18 H 0.12 1.68 8.14 -2.39 -0.02 1.66 14 19 H 0.12 1.76 8.14 -2.39 -0.02 1.74 14 20 H 0.11 1.55 8.14 -2.38 -0.02 1.53 14 21 H 0.03 1.73 8.14 -2.39 -0.02 1.72 14 22 H 0.09 4.44 6.07 -2.39 -0.01 4.43 14 23 H 0.03 1.49 8.14 -2.39 -0.02 1.47 14 24 H 0.27 13.96 8.31 -92.72 -0.77 13.19 14 Total: -1.00 -65.18 219.95 2.77 -62.41 By element: Atomic # 1 Polarization: -3.90 SS G_CDS: 1.20 Total: -2.71 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 3.39 Total: -10.32 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.80 Total: -84.17 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.04 Total: -10.28 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -65.18 2.77 -62.41 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330067426.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.210 kcal (2) G-P(sol) polarization free energy of solvation -65.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds