Wall clock time and date at job start Sun Mar 29 2020 21:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86797 * 120.00288 * 2 1 4 4 H 1.48500 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47017 * 299.99879 * 3 2 1 6 6 H 1.48495 * 109.47264 * 59.99862 * 3 2 1 7 7 C 1.40126 * 119.99461 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99520 * 180.02562 * 7 2 1 9 9 C 1.46247 * 119.99844 * 359.97438 * 7 2 1 10 10 O 1.21654 * 120.00319 * 5.10473 * 9 7 2 11 11 N 1.34780 * 119.99705 * 185.10736 * 9 7 2 12 12 C 1.47062 * 125.40961 * 354.90587 * 11 9 7 13 13 C 1.54102 * 103.99036 * 179.97438 * 12 11 9 14 14 N 1.47387 * 103.70269 * 0.10997 * 13 12 11 15 15 C 1.33951 * 125.41086 * 174.90824 * 11 9 7 16 16 O 1.21550 * 123.03871 * 359.97438 * 15 11 9 17 17 H 0.97008 * 119.99638 * 0.02562 * 1 2 3 18 18 H 1.09001 * 110.54624 * 298.59536 * 12 11 9 19 19 H 1.09005 * 110.54307 * 61.26139 * 12 11 9 20 20 H 1.09000 * 110.54733 * 118.66866 * 13 12 11 21 21 H 1.08997 * 110.55080 * 241.47915 * 13 12 11 22 22 H 0.96994 * 125.38076 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3462 -0.0006 5 1 1.8818 2.3963 -1.2125 6 1 1.8818 2.3964 1.2124 7 6 2.0070 -1.2136 -0.0005 8 1 3.0869 -1.2136 -0.0001 9 6 1.2756 -2.4800 -0.0005 10 8 0.0626 -2.4820 -0.0938 11 7 1.9454 -3.6450 0.1028 12 6 3.4090 -3.7882 0.1151 13 6 3.6336 -5.3067 0.2507 14 7 2.2679 -5.8589 0.2979 15 6 1.3838 -4.8563 0.2107 16 8 0.1809 -5.0300 0.2270 17 1 -0.4850 0.8401 -0.0004 18 1 3.8371 -3.4206 -0.8175 19 1 3.8379 -3.2597 0.9664 20 1 4.1735 -5.6924 -0.6141 21 1 4.1719 -5.5332 1.1711 22 1 2.0448 -6.7991 0.3810 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001592930.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:21 Heat of formation + Delta-G solvation = -85.363583 kcal Electronic energy + Delta-G solvation = -11185.500751 eV Core-core repulsion = 8932.895232 eV Total energy + Delta-G solvation = -2252.605519 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 184.063 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.22712 -38.60047 -37.44397 -34.84425 -34.11108 -29.72042 -28.87389 -24.79021 -23.69175 -20.77102 -19.22524 -18.08808 -17.57078 -17.37353 -16.62848 -15.63417 -15.23329 -14.79551 -14.53182 -14.43189 -13.29677 -13.04521 -13.01170 -12.73367 -12.65280 -11.95480 -11.46011 -11.03793 -10.44858 -10.03948 -9.70480 -8.42300 -7.04461 1.38122 1.42288 1.63148 1.76549 1.85486 2.27783 2.53978 3.25164 3.50174 3.68228 4.28326 4.31429 4.72636 4.92045 5.05230 5.23004 5.58015 5.96395 6.19350 6.27557 6.69460 6.95335 7.65106 8.21818 8.53179 Molecular weight = 184.06amu Principal moments of inertia in cm(-1) A = 0.066292 B = 0.013551 C = 0.011358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.269361 B = 2065.821039 C = 2464.729970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.020 3.980 3 Si 1.015 2.985 4 H -0.232 1.232 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.543 4.543 8 H 0.113 0.887 9 C 0.531 3.469 10 O -0.594 6.594 11 N -0.596 5.596 12 C 0.075 3.925 13 C 0.101 3.899 14 N -0.727 5.727 15 C 0.670 3.330 16 O -0.628 6.628 17 H 0.280 0.720 18 H 0.100 0.900 19 H 0.101 0.899 20 H 0.118 0.882 21 H 0.119 0.881 22 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.142 -4.234 0.699 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.196 4.196 3 Si 0.832 3.168 4 H -0.154 1.154 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.578 4.578 8 H 0.131 0.869 9 C 0.341 3.659 10 O -0.476 6.476 11 N -0.344 5.344 12 C -0.047 4.047 13 C -0.022 4.022 14 N -0.391 5.391 15 C 0.371 3.629 16 O -0.508 6.508 17 H 0.090 0.910 18 H 0.118 0.882 19 H 0.119 0.881 20 H 0.136 0.864 21 H 0.137 0.863 22 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 13.643 -4.091 0.638 14.258 hybrid contribution -0.475 0.097 0.023 0.486 sum 13.168 -3.994 0.661 13.776 Atomic orbital electron populations 1.70213 1.10251 1.29805 1.34566 1.27320 0.95588 1.05775 0.90879 0.84728 0.79737 0.73880 0.78457 1.15416 1.19502 1.19428 1.21506 0.95498 0.87810 1.53037 0.86924 1.19069 0.86774 0.82860 0.77238 1.90660 1.16793 1.86065 1.54102 1.46791 1.10767 1.06037 1.70814 1.22847 0.78654 0.97782 1.05382 1.22805 0.82976 0.90213 1.06210 1.45226 1.07103 1.08123 1.78618 1.16842 0.85231 0.83146 0.77698 1.90881 1.15822 1.85490 1.58622 0.90969 0.88212 0.88051 0.86359 0.86348 0.72100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.48 11.84 21.85 0.26 -50.22 14 2 C 0.02 1.10 5.50 85.33 0.47 1.57 14 3 Si 1.01 38.50 29.56 68.60 2.03 40.52 14 4 H -0.23 -7.64 7.11 99.48 0.71 -6.93 14 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 14 6 H -0.27 -9.94 7.11 99.48 0.71 -9.23 14 7 C -0.54 -29.67 9.06 24.81 0.22 -29.45 14 8 H 0.11 5.11 7.15 -2.91 -0.02 5.09 14 9 C 0.53 32.59 7.69 86.32 0.66 33.25 14 10 O -0.59 -43.93 14.27 15.59 0.22 -43.70 14 11 N -0.60 -29.03 3.00 -776.05 -2.33 -31.36 14 12 C 0.08 2.24 6.38 86.65 0.55 2.79 14 13 C 0.10 2.01 8.08 86.58 0.70 2.71 14 14 N -0.73 -22.35 6.39 -476.64 -3.04 -25.40 14 15 C 0.67 32.57 8.53 179.57 1.53 34.10 14 16 O -0.63 -38.69 16.53 15.92 0.26 -38.43 14 17 H 0.28 15.46 8.29 -92.70 -0.77 14.69 14 18 H 0.10 2.63 8.14 -2.39 -0.02 2.61 14 19 H 0.10 2.68 8.14 -2.38 -0.02 2.66 14 20 H 0.12 1.51 8.14 -2.39 -0.02 1.49 14 21 H 0.12 1.52 8.14 -2.39 -0.02 1.50 14 22 H 0.44 10.75 8.96 -92.71 -0.83 9.92 14 Total: -1.00 -93.09 205.12 1.96 -91.12 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.42 Total: 12.50 kcal Atomic # 6 Polarization: 40.83 SS G_CDS: 4.14 Total: 44.97 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -5.11 Total: -106.98 kcal Atomic # 8 Polarization: -82.62 SS G_CDS: 0.49 Total: -82.13 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.52 kcal Total: -93.09 1.96 -91.12 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001592930.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.758 kcal (2) G-P(sol) polarization free energy of solvation -93.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds