Wall clock time and date at job start Sun Mar 29 2020 21:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86807 * 120.00138 * 2 1 4 4 H 1.48496 * 109.46873 * 270.00134 * 3 2 1 5 5 H 1.48498 * 109.46822 * 30.00092 * 3 2 1 6 6 H 1.48503 * 109.47024 * 149.99899 * 3 2 1 7 7 C 1.38953 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99401 * 0.02562 * 7 2 1 9 9 N 1.37096 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.34768 * 120.00070 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00084 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00055 * 180.02562 * 10 9 7 13 13 H 1.09002 * 110.27471 * 304.29803 * 12 10 9 14 14 C 1.54945 * 110.39154 * 66.44446 * 12 10 9 15 15 C 1.55304 * 100.94045 * 155.40188 * 14 12 10 16 16 C 1.54376 * 102.25567 * 325.86882 * 15 14 12 17 17 O 1.43240 * 107.58930 * 21.35352 * 16 15 14 18 18 H 0.96997 * 119.99455 * 359.97438 * 1 2 3 19 19 H 0.97006 * 119.99979 * 0.02562 * 9 7 2 20 20 H 1.08997 * 111.12470 * 273.31907 * 14 12 10 21 21 H 1.08995 * 111.12619 * 37.48895 * 14 12 10 22 22 H 1.08998 * 110.85543 * 207.67443 * 15 14 12 23 23 H 1.09010 * 110.84919 * 84.05659 * 15 14 12 24 24 H 1.08999 * 109.83271 * 261.84174 * 16 15 14 25 25 H 1.08999 * 109.91049 * 140.90833 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5608 -2.3705 0.0000 13 1 5.9385 -1.7944 -0.8447 14 6 6.1007 -1.7901 1.3313 15 6 7.5029 -2.4546 1.3954 16 6 7.2433 -3.8310 0.7462 17 8 6.0593 -3.7167 -0.0519 18 1 -0.4849 0.8401 0.0004 19 1 3.8649 -0.3633 -0.0004 20 1 6.1824 -0.7044 1.2820 21 1 5.4814 -2.0978 2.1738 22 1 7.8314 -2.5688 2.4284 23 1 8.2295 -1.8838 0.8171 24 1 7.0958 -4.5834 1.5209 25 1 8.0882 -4.1096 0.1164 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006293204.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:15 Heat of formation + Delta-G solvation = -108.686956 kcal Electronic energy + Delta-G solvation = -11340.325678 eV Core-core repulsion = 9124.823214 eV Total energy + Delta-G solvation = -2215.502464 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.04166 -39.20191 -36.08873 -33.93001 -32.98818 -30.76326 -27.02188 -24.13941 -22.52588 -21.34247 -20.35396 -18.37151 -17.39597 -16.95421 -16.24056 -15.85868 -15.56465 -14.94342 -14.47787 -14.22354 -14.07270 -13.06681 -12.84449 -12.65883 -12.44925 -12.23385 -11.98293 -11.78512 -11.56851 -10.81944 -10.31870 -10.20614 -8.45105 -6.08162 1.29098 1.35072 1.44952 1.82140 2.21616 2.43355 3.07100 3.24177 3.54673 3.93319 3.95949 4.20398 4.26693 4.43576 4.80681 4.84316 4.89570 5.01500 5.24206 5.48074 5.86232 6.03512 6.54412 6.80838 7.30734 7.86851 8.72470 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.063994 B = 0.011717 C = 0.010282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.437185 B = 2389.164207 C = 2722.608820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.965 3.035 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.226 1.226 7 C -0.338 4.338 8 H 0.052 0.948 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.623 6.623 12 C 0.074 3.926 13 H 0.117 0.883 14 C -0.146 4.146 15 C -0.137 4.137 16 C 0.034 3.966 17 O -0.396 6.396 18 H 0.282 0.718 19 H 0.392 0.608 20 H 0.118 0.882 21 H 0.063 0.937 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.065 0.935 25 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.106 4.360 2.753 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.211 4.211 3 Si 0.784 3.216 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.149 1.149 7 C -0.467 4.467 8 H 0.070 0.930 9 N -0.218 5.218 10 C 0.230 3.770 11 O -0.509 6.509 12 C 0.014 3.986 13 H 0.135 0.865 14 C -0.184 4.184 15 C -0.174 4.174 16 C -0.042 4.042 17 O -0.315 6.315 18 H 0.091 0.909 19 H 0.229 0.771 20 H 0.137 0.863 21 H 0.082 0.918 22 H 0.124 0.876 23 H 0.126 0.874 24 H 0.083 0.917 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.420 3.579 2.642 17.979 hybrid contribution -0.474 0.609 0.015 0.772 sum 16.945 4.188 2.657 17.656 Atomic orbital electron populations 1.69804 1.08258 1.29553 1.49430 1.26181 0.96521 1.02861 0.95512 0.85370 0.79734 0.76236 0.80259 1.17872 1.19610 1.14862 1.19021 0.81300 0.95114 1.51220 0.93000 1.41867 1.05809 1.07131 1.67024 1.20968 0.90688 0.83568 0.81809 1.90538 1.71457 1.33348 1.55512 1.22839 0.88993 0.85265 1.01536 0.86536 1.23336 0.97246 1.03204 0.94650 1.23125 0.96013 0.94417 1.03816 1.23491 0.86944 0.99000 0.94746 1.88495 1.44110 1.28404 1.70539 0.90872 0.77135 0.86328 0.91781 0.87646 0.87436 0.91661 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.96 21.66 0.30 -56.03 15 2 C -0.01 -0.64 5.50 84.93 0.47 -0.18 15 3 Si 0.97 38.04 27.74 68.60 1.90 39.94 15 4 H -0.25 -9.47 7.11 99.48 0.71 -8.77 15 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 6 H -0.23 -7.27 6.52 99.48 0.65 -6.62 15 7 C -0.34 -20.32 10.16 84.04 0.85 -19.47 15 8 H 0.05 3.74 7.39 -2.91 -0.02 3.72 15 9 N -0.58 -28.19 5.09 -306.99 -1.56 -29.75 15 10 C 0.44 21.89 7.14 87.66 0.63 22.52 15 11 O -0.62 -38.72 16.12 15.42 0.25 -38.47 15 12 C 0.07 2.60 3.86 30.51 0.12 2.71 15 13 H 0.12 3.28 8.14 -2.39 -0.02 3.26 15 14 C -0.15 -3.69 6.56 32.05 0.21 -3.48 15 15 C -0.14 -2.41 7.02 31.85 0.22 -2.19 15 16 C 0.03 0.83 7.79 72.45 0.56 1.39 15 17 O -0.40 -14.91 10.61 -130.49 -1.38 -16.30 15 18 H 0.28 15.45 8.31 -92.71 -0.77 14.68 15 19 H 0.39 15.44 5.76 -92.70 -0.53 14.91 15 20 H 0.12 2.24 8.14 -2.39 -0.02 2.22 15 21 H 0.06 1.89 8.05 -2.39 -0.02 1.87 15 22 H 0.11 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.11 1.31 8.14 -2.38 -0.02 1.29 15 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 15 25 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 Total: -1.00 -81.05 220.63 3.17 -77.88 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.60 Total: 21.42 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 3.06 Total: 1.31 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -1.26 Total: -85.78 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -1.14 Total: -54.77 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.94 kcal Total: -81.05 3.17 -77.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006293204.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.806 kcal (2) G-P(sol) polarization free energy of solvation -81.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds